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NBDC - LSDB Archive
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BP914149
Clone id YMU001_000042_E02
Library
Length 350
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAATCCTTGACCCTTCAAGTGCAACCTTCTTGGATCTGTGACGGATTGCACGTAACATC
TCTGCCGCACCCGCTTCAGATACCCTTGTGCCATCATGCTTTACATAGCTCTTATGTTCA
TGTTCTTCAAAAGGAGCACCATCAAACAACCCAAGAGTAATCTGCTTGTTCAACTTGCCC
TCTTCGTGATCAACATAAGCAGAGAAATCATGAAGTTTCTTTGCCTTTTTGGTCACAGAT
TGGACAGGCTTTATGCCTTGCTGGACTCTTTGTAAGATGGGGCCCCGGGAATCATCCGAC
TGATAATCATATTGTTGTGGAGTTGTATGTGCATCGACTCTCTCACTAGC
■■Homology search results ■■ -
sp_hit_id Q5RDI0
Definition sp|Q5RDI0|SRBD1_PONAB S1 RNA-binding domain-containing protein 1 OS=Pongo abelii
Align length 74
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914149|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_E02.
         (350 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RDI0|SRBD1_PONAB S1 RNA-binding domain-containing protein 1...    32   1.3  
sp|Q8N5C6|SRBD1_HUMAN S1 RNA-binding domain-containing protein 1...    32   1.3  
sp|P53118|ROG1_YEAST Putative lipase ROG1 OS=Saccharomyces cerev...    32   1.3  
sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=X...    31   1.7  
sp|A4QLG7|YCF1_LEPVR Putative membrane protein ycf1 OS=Lepidium ...    30   2.8  
sp|Q4HY90|SWC4_GIBZE SWR1-complex protein 4 OS=Gibberella zeae G...    30   2.8  
sp|Q9JMS5|YUAO_ECOLI Uncharacterized protein yuaO OS=Escherichia...    30   3.7  
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen...    30   3.7  
sp|Q83CJ2|CBPA_COXBU Curved DNA-binding protein OS=Coxiella burn...    30   3.7  
sp|A9NDK6|CBPA_COXBR Curved DNA-binding protein OS=Coxiella burn...    30   3.7  
sp|A9KE65|CBPA_COXBN Curved DNA-binding protein OS=Coxiella burn...    30   3.7  
sp|A4QKQ3|YCF1_CAPBU Putative membrane protein ycf1 OS=Capsella ...    30   4.8  
sp|Q497V5|SRBD1_MOUSE S1 RNA-binding domain-containing protein 1...    30   4.8  
sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=X...    29   6.3  
sp|Q61136|PRP4B_MOUSE Serine/threonine-protein kinase PRP4 homol...    29   6.3  
sp|Q6FKJ1|NTE1_CANGA Lysophospholipase NTE1 OS=Candida glabrata ...    29   6.3  
sp|A4QKZ2|YCF1_CRUWA Putative membrane protein ycf1 OS=Crucihima...    29   8.2  
sp|P56785|YCF1_ARATH Putative membrane protein ycf1 OS=Arabidops...    29   8.2  

>sp|Q5RDI0|SRBD1_PONAB S1 RNA-binding domain-containing protein 1
           OS=Pongo abelii GN=SRBD1 PE=2 SV=1
          Length = 995

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = -1

Query: 275 LQRVQQGIKPVQSVTKKAKKLHDFSAYVDHEEGKLNKQITLGLFDGAPFEEHEHKSYVKH 96
           L+ VQQ ++ +++V   AKK+H     +  +EGK+++ +   + +   FEE EH S    
Sbjct: 261 LREVQQTLEELRAV---AKKVHSTIQKIK-KEGKMSECLLKAMLNCKTFEELEHVSAPYK 316

Query: 95  DGTRVSEAGAAEML 54
            G++ ++A  A  L
Sbjct: 317 TGSKGTKAQRARQL 330


>sp|Q8N5C6|SRBD1_HUMAN S1 RNA-binding domain-containing protein 1
           OS=Homo sapiens GN=SRBD1 PE=1 SV=2
          Length = 995

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/74 (29%), Positives = 41/74 (55%)
 Frame = -1

Query: 275 LQRVQQGIKPVQSVTKKAKKLHDFSAYVDHEEGKLNKQITLGLFDGAPFEEHEHKSYVKH 96
           L+ VQQ ++ +++V   AKK+H     +  +EGK+++ +   + +   FEE EH S    
Sbjct: 261 LREVQQTLEELRAV---AKKVHSTIQKIK-KEGKMSECLLKAMLNCKTFEELEHVSAPYK 316

Query: 95  DGTRVSEAGAAEML 54
            G++ ++A  A  L
Sbjct: 317 TGSKGTKAQRARQL 330


>sp|P53118|ROG1_YEAST Putative lipase ROG1 OS=Saccharomyces
           cerevisiae GN=ROG1 PE=1 SV=1
          Length = 685

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -1

Query: 260 QGIKPVQSVTKKAKKLHDFSAYVDHEEGKLNKQITLGLFDGAP 132
           Q ++P+QSVT+  KK    +  +  E G LNK  T G+FD  P
Sbjct: 596 QVVEPIQSVTEGKKKYRK-AENIPQEYGWLNKVETNGVFDEGP 637


>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B
           OS=Xenopus laevis GN=rnf111-B PE=2 SV=1
          Length = 959

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 65  PHPLQIPLCHHALHSSYVHVLQKEHHQTTQE*SACSTCP 181
           P P  +  C H +H+SY  + +  HHQT       S+CP
Sbjct: 595 PPPTPLSSCRHYMHASYTSLPRPLHHQT-------SSCP 626


>sp|A4QLG7|YCF1_LEPVR Putative membrane protein ycf1 OS=Lepidium
            virginicum GN=ycf1-A PE=3 SV=1
          Length = 1734

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 129  KRSTIKQPKSNLLVQLALFVINISREIMKFLCLFGHRL---DRLYALL 263
            KR   KQ KSN  V+L LF+   SR  +++ C F  ++    ++Y LL
Sbjct: 1479 KRQNKKQSKSNTEVELDLFLTRHSRFQLRWNCFFNQKILNNVKVYCLL 1526


>sp|Q4HY90|SWC4_GIBZE SWR1-complex protein 4 OS=Gibberella zeae
           GN=SWC4 PE=3 SV=1
          Length = 570

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -1

Query: 278 ILQRVQQGIKPVQSVTKKAKKLHDFSAYVDHEEGKLNKQITLGLFDGAPFEEHEHKS 108
           +  ++    KPVQ +T+    LH+  A+ + ++ KL K+  L     +  E  E +S
Sbjct: 220 VASKMMAAQKPVQYMTQPEFSLHELMAHFNPQQEKLRKEFALNALTRSREEAREEES 276


>sp|Q9JMS5|YUAO_ECOLI Uncharacterized protein yuaO OS=Escherichia coli
            (strain K12) GN=yuaO PE=4 SV=1
          Length = 1758

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 311  YDYQSDDSRGPILQRVQQGIKPVQSVTKKAKKLHDFSAYVDHEEGKLNKQITLGLFDG-A 135
            YD    D+RG         +  + +V+K+A+   DF+ Y  H  G  NK + + L DG A
Sbjct: 1266 YDGTRLDARG------NDAVDGILNVSKEAQV--DFNGYSQHMTGIDNKGM-IYLSDGSA 1316

Query: 134  PFEEHEHKSYVKHDGTRV 81
              + +  K YV HDG+ V
Sbjct: 1317 SSDVYLDKDYVAHDGSGV 1334


>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia
           OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1
          Length = 954

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 65  PHPLQIPLCHHALHSSYVHVLQKEHHQTTQE*SACSTCP 181
           P P  +  C H +H+ Y  + +  HHQT       S+CP
Sbjct: 605 PPPTPLSSCRHYMHAPYTSLTRPLHHQT-------SSCP 636


>sp|Q83CJ2|CBPA_COXBU Curved DNA-binding protein OS=Coxiella
           burnetii GN=cbpA PE=3 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 212 EVSLPFWSQIGQALCLAGLFVRWGPGNHPTDNHIVVELYV 331
           +++LP  SQ GQ L L G   R  PG  P D ++++++Y+
Sbjct: 248 DLTLPPGSQTGQKLRLKG---RGLPGGTPGDQYVLIKIYI 284


>sp|A9NDK6|CBPA_COXBR Curved DNA-binding protein OS=Coxiella
           burnetii (strain RSA 331 / Henzerling II) GN=cbpA PE=3
           SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 212 EVSLPFWSQIGQALCLAGLFVRWGPGNHPTDNHIVVELYV 331
           +++LP  SQ GQ L L G   R  PG  P D ++++++Y+
Sbjct: 248 DLTLPPGSQTGQKLRLKG---RGLPGGTPGDQYVLIKIYI 284
tr_hit_id B4KZJ7
Definition tr|B4KZJ7|B4KZJ7_DROMO GI12957 OS=Drosophila mojavensis
Align length 75
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914149|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_E02.
         (350 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4KZJ7|B4KZJ7_DROMO GI12957 OS=Drosophila mojavensis GN=GI129...    36   1.1  
tr|B6IV70|B6IV70_RHOCS Phosphoenolpyruvate carboxykinase (ATP) O...    34   4.1  
tr|Q229R9|Q229R9_TETTH Putative uncharacterized protein OS=Tetra...    34   4.1  
tr|Q16K62|Q16K62_AEDAE Receptor protein tyrosine phosphatase OS=...    34   4.1  
tr|A2U9J7|A2U9J7_BACCO CDP-glycerol:poly(Glycerophosphate) glyce...    33   5.4  
tr|Q8RI50|Q8RI50_FUSNN Ethanolamine utilization protein eutJ OS=...    33   7.0  
tr|Q57ZY2|Q57ZY2_9TRYP Putative uncharacterized protein OS=Trypa...    33   7.0  
tr|Q8NY34|Q8NY34_STAAW Putative uncharacterized protein MW0402 O...    33   9.2  
tr|Q6GC43|Q6GC43_STAAS Putative uncharacterized protein OS=Staph...    33   9.2  
tr|Q0G752|Q0G752_9RHIZ Putative uncharacterized protein OS=Fulvi...    33   9.2  

>tr|B4KZJ7|B4KZJ7_DROMO GI12957 OS=Drosophila mojavensis GN=GI12957
           PE=4 SV=1
          Length = 1147

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +2

Query: 65  PHPLQIPLCHHALHSSYVHVLQKEHHQTTQE*SACSTCPLRDQHKQRNHEVSLPFWSQIG 244
           P+  Q+P        SY H+ Q++  Q  Q+  + S  PL  Q   +N+ +  P WS+I 
Sbjct: 588 PYEQQLPYGQSQAVPSYNHMPQQQQQQQQQQSQSQSQPPLESQQLGKNNSLFSPEWSEIK 647

Query: 245 QALCLAGLFVRWGPG 289
           +     GL     PG
Sbjct: 648 KEPQFNGLLPPPPPG 662


>tr|B6IV70|B6IV70_RHOCS Phosphoenolpyruvate carboxykinase (ATP)
           OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
           GN=pckA PE=4 SV=1
          Length = 532

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = -1

Query: 254 IKPVQSVTKKAKKLHDFSAYVDH----EEGKLNKQITLGLFDGAPFEEHEHKSYVKHDGT 87
           + P+  +T +    H  S Y       E+G    Q T     GAPF      +Y K  G 
Sbjct: 355 LPPISKLTPEQAMYHFLSGYTSRVAGTEKGVTEPQATFSTCFGAPFMPRHPSAYAKLLGE 414

Query: 86  RVSEAGA 66
           R+S  GA
Sbjct: 415 RISRGGA 421


>tr|Q229R9|Q229R9_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01345770 PE=4
           SV=1
          Length = 638

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/83 (25%), Positives = 44/83 (53%)
 Frame = -1

Query: 275 LQRVQQGIKPVQSVTKKAKKLHDFSAYVDHEEGKLNKQITLGLFDGAPFEEHEHKSYVKH 96
           L+ VQ+ I  V+   ++ KKL + +   ++ E +L K+    L D    ++ +H++Y K+
Sbjct: 328 LKEVQEEINEVKKQLEEIKKLRETTQSGENPEIELAKKECSDLVD--QLKKQKHEAYQKY 385

Query: 95  DGTRVSEAGAAEMLRAIRHRSKK 27
           D  R +     E++R + +  K+
Sbjct: 386 DADRKAYQEQQELIRYVEYVKKQ 408


>tr|Q16K62|Q16K62_AEDAE Receptor protein tyrosine phosphatase
           OS=Aedes aegypti GN=AAEL013105 PE=4 SV=1
          Length = 936

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -1

Query: 194 VDHEEGKLNKQITLGLFDGAPFEEHEHKSYVKHDGTRVSEAGAAEMLRAIRHRSKKVALE 15
           +D  E  +      GL +   F ++++K    +    ++   A + + AI++RS  V LE
Sbjct: 714 IDSGETNIKMDAIGGLVNNIDFIDNQYKLITSYQPKEINLTSALKSVNAIKNRSSLVPLE 773

Query: 14  GSRI 3
           GSR+
Sbjct: 774 GSRV 777


>tr|A2U9J7|A2U9J7_BACCO CDP-glycerol:poly(Glycerophosphate)
           glycerophosphotransferase OS=Bacillus coagulans 36D1
           GN=BcoaDRAFT_2667 PE=4 SV=1
          Length = 1198

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = -1

Query: 335 DAHTTPQQYDYQSDDSRGPILQRVQQGIKPVQSVTKKAKKLHDF-----SAYVDHEEGKL 171
           D ++  +    +++D  GP+L  V+Q I+ + ++   ++K         S + +HE+GK+
Sbjct: 340 DVYSEERGQYLKNEDLPGPLLFSVEQLIEAIHNIETVSQKYASNYQNLRSRFTNHEDGKV 399

Query: 170 NKQITLGLFDGAPFEEH 120
            ++I   +FD A    H
Sbjct: 400 TERIVQYIFDQASLPLH 416


>tr|Q8RI50|Q8RI50_FUSNN Ethanolamine utilization protein eutJ
           OS=Fusobacterium nucleatum subsp. nucleatum GN=FN1783
           PE=4 SV=1
          Length = 274

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = -1

Query: 275 LQRVQQGIKPVQSVTKKAKKLHDFSA-YVDHEEGKLNKQITLGLFDGAPFEEHEHKSYVK 99
           L +V + IK  +   KK K   D S  YV  + G  N  IT+   DG P      +S V 
Sbjct: 3   LDKVNKYIKDFEKTIKKPKINFDKSKFYVGVDLGTANIVITILDKDGKPVAGVTQRSRVV 62

Query: 98  HDGTRVSEAGAAEMLRAIRHR-SKKVALE 15
            DG  V    A E++R ++    KK+ +E
Sbjct: 63  RDGIVVDFMEAIEIVRKLKENLEKKLGIE 91


>tr|Q57ZY2|Q57ZY2_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.5.3060 PE=4 SV=1
          Length = 334

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 24/87 (27%), Positives = 33/87 (37%)
 Frame = +2

Query: 77  QIPLCHHALHSSYVHVLQKEHHQTTQE*SACSTCPLRDQHKQRNHEVSLPFWSQIGQALC 256
           Q PL H  +   Y H L    H   +   A +  P+RD H +  H     FW ++G   C
Sbjct: 50  QFPLHHAGIPGLYFHSLL---HSLAE--FATTPRPVRDNHVKMLHAPMEDFWQRVGVLNC 104

Query: 257 LAGLFVRWGPGNHPTDNHIVVELYVHR 337
               F     G HP    + + L   R
Sbjct: 105 AYYTFFTPFSGQHPALGAVELSLSPQR 131


>tr|Q8NY34|Q8NY34_STAAW Putative uncharacterized protein MW0402
           OS=Staphylococcus aureus (strain MW2) GN=MW0402 PE=4
           SV=1
          Length = 441

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -1

Query: 227 KAKKLHDFSAYVDHEEGKLNKQITLGLFDGAPFEEHEHKSYVKHDGTRVSEAGAAEMLRA 48
           K  K H+   ++  EE K  K+  L    G  + E  +KS+VKH    +S+  + E+LRA
Sbjct: 245 KNGKGHEMEGFLTEEEQKAIKK-ELKKLQG--YAEENNKSFVKHSNNAISKLASIELLRA 301


>tr|Q6GC43|Q6GC43_STAAS Putative uncharacterized protein
           OS=Staphylococcus aureus (strain MSSA476) GN=SAS0404
           PE=4 SV=1
          Length = 441

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -1

Query: 227 KAKKLHDFSAYVDHEEGKLNKQITLGLFDGAPFEEHEHKSYVKHDGTRVSEAGAAEMLRA 48
           K  K H+   ++  EE K  K+  L    G  + E  +KS+VKH    +S+  + E+LRA
Sbjct: 245 KNGKGHEMEGFLTEEEQKAIKK-ELKKLQG--YAEENNKSFVKHSNNAISKLASIELLRA 301


>tr|Q0G752|Q0G752_9RHIZ Putative uncharacterized protein
           OS=Fulvimarina pelagi HTCC2506 GN=FP2506_06721 PE=4 SV=1
          Length = 119

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 WSQIGQALCLAGLFVRWGPGNHPTDNHIVVE 322
           W+ IG+ L LA +   WG    PT +H+V++
Sbjct: 27  WAAIGRKLALATVVETWGSAPRPTGSHLVID 57