BP914102 |
Clone id |
YMU001_000039_H05 |
Library |
YMU01 |
Length |
320 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000039_H05. |
Accession |
BP914102 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGAATTGAGTGCATGGCAGGTGAGAAGGACAATGTGTGTCCAAAGATAGAGGTGCTTCCT ATGCAGCCAAAGCACTATATGGTGGGTGATGTGGATTCTAAGGTGGCGTGCTTGTTTTGG CCGATGAAGGGAGGTGCTAGTGGCGCATGCCCGCATGGGAATGGTCCGAAGTCCATACGA TGCTGATGTGGTAGTGCGACCGAAAGGGCTGTGTTCCCACGCTCGTGAAAGGGGCCCCCT TTTGGGTACTAAGCCCCCCCCCAACGGCCACCANCACCACTAGCGACATCGCTAGTGGTG AGGTAAGGGGCAGTTCCCGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q05586 |
Definition |
sp|Q05586|NMDZ1_HUMAN Glutamate [NMDA] receptor subunit zeta-1 OS=Homo sapiens |
Align length |
66 |
Score (bit) |
30.8 |
E-value |
2.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914102|Adiantum capillus-veneris mRNA, clone: YMU001_000039_H05. (320 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q05586|NMDZ1_HUMAN Glutamate [NMDA] receptor subunit zeta-1 O... 31 2.2 sp|Q5R1P0|NMDZ1_CANFA Glutamate [NMDA] receptor subunit zeta-1 O... 31 2.2 sp|P35439|NMDZ1_RAT Glutamate [NMDA] receptor subunit zeta-1 OS=... 30 2.8 sp|P35438|NMDZ1_MOUSE Glutamate [NMDA] receptor subunit zeta-1 O... 30 2.8 sp|A8MJN5|SECA_ALKOO Protein translocase subunit secA OS=Alkalip... 30 4.8 sp|Q2LUR5|MUTL_SYNAS DNA mismatch repair protein mutL OS=Syntrop... 30 4.8 sp|Q05584|GLO2_YEAST Hydroxyacylglutathione hydrolase, cytoplasm... 29 6.3 sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus... 29 8.2 sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Aloua... 29 8.2
>sp|Q05586|NMDZ1_HUMAN Glutamate [NMDA] receptor subunit zeta-1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1 Length = 938
Score = 30.8 bits (68), Expect = 2.2 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Frame = -3
Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40 F T S + G IP+ T S++ K HL T H +W +Y W Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYSW 160
Query: 39 THIVLL 22 HI+LL Sbjct: 161 NHIILL 166
>sp|Q5R1P0|NMDZ1_CANFA Glutamate [NMDA] receptor subunit zeta-1 OS=Canis familiaris GN=GRIN1 PE=2 SV=2 Length = 943
Score = 30.8 bits (68), Expect = 2.2 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Frame = -3
Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40 F T S + G IP+ T S++ K HL T H +W +Y W Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYSW 160
Query: 39 THIVLL 22 HI+LL Sbjct: 161 NHIILL 166
>sp|P35439|NMDZ1_RAT Glutamate [NMDA] receptor subunit zeta-1 OS=Rattus norvegicus GN=Grin1 PE=1 SV=1 Length = 938
Score = 30.4 bits (67), Expect = 2.8 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Frame = -3
Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40 F T S + G IP+ T S++ K HL T H +W +Y W Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYNW 160
Query: 39 THIVLL 22 HI+LL Sbjct: 161 NHIILL 166
>sp|P35438|NMDZ1_MOUSE Glutamate [NMDA] receptor subunit zeta-1 OS=Mus musculus GN=Grin1 PE=1 SV=1 Length = 938
Score = 30.4 bits (67), Expect = 2.8 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Frame = -3
Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40 F T S + G IP+ T S++ K HL T H +W +Y W Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYNW 160
Query: 39 THIVLL 22 HI+LL Sbjct: 161 NHIILL 166
>sp|A8MJN5|SECA_ALKOO Protein translocase subunit secA OS=Alkaliphilus oremlandii (strain OhILAs) GN=secA PE=3 SV=1 Length = 890
Score = 29.6 bits (65), Expect = 4.8 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +1
Query: 22 EKDNVCPKIEVL-PMQPKHYMVGDVDSKVACLFWPMKGGASGACPHGNGPKSIRC*CG 192 EK+ V + +V P++ H GD D+K A + + G + CP G+G K +C CG Sbjct: 836 EKEAVVERKQVAKPIEASH---GDGDAKKAPVVKKEESGRNDLCPCGSGKKYKKC-CG 889
>sp|Q2LUR5|MUTL_SYNAS DNA mismatch repair protein mutL OS=Syntrophus aciditrophicus (strain SB) GN=mutL PE=3 SV=1 Length = 616
Score = 29.6 bits (65), Expect = 4.8 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -3
Query: 201 GRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHITHHIVLWLHRK 55 G T G + P CAT+ ++ RH+R H+ +H V+ +R+ Sbjct: 227 GETDRVRVTGFASRPDFTCATTRQIYTFVNRRHVRDHLLNHAVMTAYRR 275
>sp|Q05584|GLO2_YEAST Hydroxyacylglutathione hydrolase, cytoplasmic isozyme OS=Saccharomyces cerevisiae GN=GLO2 PE=1 SV=1 Length = 274
Score = 29.3 bits (64), Expect = 6.3 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +1
Query: 1 RIECMAGEKDNVCPKIEVLPMQPKHYMVGDVDSKVACLFWP 123 ++E + G KD CPK+ ++P K +GD++ + C+ P Sbjct: 83 KVEVIGGSKD--CPKVTIIPENLKKLHLGDLE--ITCIRTP 119
>sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus apella GN=PROP1 PE=3 SV=1 Length = 226
Score = 28.9 bits (63), Expect = 8.2 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = -1
Query: 248 YPKGGPFHERGNTALSVALPHQHRMDFG---PFPCGHAPLAPP 129 +P F + +T + ALPHQ + P P GH P PP Sbjct: 169 HPYSHDFPSQPSTGGTFALPHQSEDGYPTLHPAPAGHLPCPPP 211
>sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Alouatta belzebul GN=PROP1 PE=3 SV=1 Length = 226
Score = 28.9 bits (63), Expect = 8.2 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = -1
Query: 248 YPKGGPFHERGNTALSVALPHQHR---MDFGPFPCGHAPLAPP 129 +P F + +T + ALPHQ P P GH P PP Sbjct: 169 HPYSHAFPSQPSTGSTFALPHQSEDWYPTLHPAPAGHLPCPPP 211
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4S625 |
Definition |
tr|Q4S625|Q4S625_TETNG Chromosome 9 SCAF14729, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis |
Align length |
43 |
Score (bit) |
35.0 |
E-value |
1.9 |
Report |
|