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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914064
Clone id YMU001_000039_D12
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTGAATTCTTGGATTTATTGAATTCGCGGCCGCGAATTCTTCCAGTTTTTTTTTGATTG
AAATCAAAACCAATTTATTTGCTTCTGTACATCAATAAGTCACAAAGATGACAACCTTTA
CAGCATGAGCACCTGTTATGTGGCTCTACCAAAGGCATCCACATAATGAAATGATGTGCA
TGATTGTAGCCATAAATCAAGGTCTTCAGGCATGGAAAGGACCCTTCAACCTCATGGGGT
GATGATAAGAAACAGTGATCGAAATATACTCGTGCGGCGACATGCGCCTAAATATAGTGA
GGAGAGGGTGCGGCGACATGCACCTAAATATAGTGAGGAGAGGACAAGGTTGATGCCGAC
ATCGAGGAGACGACGGACATCTCCAACCAATGCCGCATAGAACAGAACAGAAAATGCCTA
CAGAACCAAACCAAAATATTTTTGCATGCATGTATGTACCTAGAATAGTCCTTCAATCTA
TGCTTCCTTCTTGATGATGGTCTCTATTCGCTTGAGAGGGAGAAGCGGCACATACCCCAC
GAGTGGAACATGGCGCTCTT
■■Homology search results ■■ -
sp_hit_id Q64612
Definition sp|Q64612|PTPRV_RAT Receptor-type tyrosine-protein phosphatase V OS=Rattus norvegicus
Align length 22
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914064|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_D12.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q64612|PTPRV_RAT Receptor-type tyrosine-protein phosphatase V...    32   2.2  
sp|Q9QZH6|ECSIT_MOUSE Evolutionarily conserved signaling interme...    31   2.9  
sp|Q5XIC2|ECSIT_RAT Evolutionarily conserved signaling intermedi...    30   5.0  
sp|Q9D1H0|CL052_MOUSE Uncharacterized protein C12orf52 homolog O...    30   6.5  
sp|Q91ZT1|VGFR3_RAT Vascular endothelial growth factor receptor ...    30   8.5  
sp|P35917|VGFR3_MOUSE Vascular endothelial growth factor recepto...    30   8.5  

>sp|Q64612|PTPRV_RAT Receptor-type tyrosine-protein phosphatase V
            OS=Rattus norvegicus GN=Ptprv PE=1 SV=1
          Length = 1711

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 379  GSVGIFCSVLCGIGWRCPSSPR 314
            GS+ I C+VLC + WRC   PR
Sbjct: 1087 GSIVIVCAVLCLLRWRCLKGPR 1108


>sp|Q9QZH6|ECSIT_MOUSE Evolutionarily conserved signaling
           intermediate in Toll pathway, mitochondrial OS=Mus
           musculus GN=Ecsit PE=1 SV=2
          Length = 435

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 128 VHDCSHKSRSSGMERTLQPHGVMIRNSDRNILVRRHAP 241
           V+  S  S S+GME   QPH V I++ D+   + RH P
Sbjct: 244 VYQMSLPSDSTGMEDPTQPHIVGIQSPDQQAALARHNP 281


>sp|Q5XIC2|ECSIT_RAT Evolutionarily conserved signaling intermediate
           in Toll pathway, mitochondrial OS=Rattus norvegicus
           GN=Ecsit PE=2 SV=1
          Length = 434

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 128 VHDCSHKSRSSGMERTLQPHGVMIRNSDRNILVRRHAP 241
           V+  S  S S+G+E   QPH V I++ D+   + RH P
Sbjct: 243 VYQMSLPSESTGIEDPTQPHIVGIQSPDQQAALARHNP 280


>sp|Q9D1H0|CL052_MOUSE Uncharacterized protein C12orf52 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 253

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = -2

Query: 337 WRCPSSPRCRHQPCPLLTIFRCMSP------HPLLTIFRRMSPHEYISITVS 200
           W  P++PR  H PCP  T  R + P       P +T   +MS  + + +  S
Sbjct: 126 WTPPATPRGSHTPCPRETPLRAIHPAGPSRTEPRVTAGSQMSSQDGLCVPCS 177


>sp|Q91ZT1|VGFR3_RAT Vascular endothelial growth factor receptor 3
           OS=Rattus norvegicus GN=Flt4 PE=1 SV=1
          Length = 1363

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 502 CSTRGVCAASPSQANRDHHQEGSID*RTILGTYMHAKIFWFGSVGIFCSV 353
           C+ +G   +S S A      +GS++   ++GT + A  FW   + IFC++
Sbjct: 751 CNAKGCVNSSASVAVEGSEDKGSMEIVILIGTGVIAVFFWVLLLLIFCNM 800


>sp|P35917|VGFR3_MOUSE Vascular endothelial growth factor receptor 3
           OS=Mus musculus GN=Flt4 PE=1 SV=1
          Length = 1363

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 502 CSTRGVCAASPSQANRDHHQEGSID*RTILGTYMHAKIFWFGSVGIFCSV 353
           C+ +G   +S S A      +GS++   ++GT + A  FW   + IFC++
Sbjct: 751 CNAKGCVNSSASVAVEGSEDKGSMEIVILIGTGVIAVFFWVLLLLIFCNM 800
tr_hit_id A8NKV2
Definition tr|A8NKV2|A8NKV2_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 77
Score (bit) 35.4
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914064|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_D12.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NKV2|A8NKV2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   1.6  
tr|A7SEQ7|A7SEQ7_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   3.7  
tr|Q0BHI3|Q0BHI3_BURCM ABC transporter related OS=Burkholderia a...    34   4.8  
tr|B1YUK7|B1YUK7_BURA4 ABC transporter related OS=Burkholderia a...    34   4.8  
tr|B1SX20|B1SX20_9BURK ABC transporter related OS=Burkholderia a...    34   4.8  
tr|B1FC60|B1FC60_9BURK ABC transporter related OS=Burkholderia a...    34   4.8  
tr|Q9R0Z8|Q9R0Z8_RAT Secretory leukocyte protease inhibitor OS=R...    33   8.1  

>tr|A8NKV2|A8NKV2_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10870 PE=4
           SV=1
          Length = 520

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -2

Query: 373 VGIFCSVLCGIGWRCP----SSPRCRHQPCPLLTIFRCMSPHPLLTIFRRMSPHEYIS-- 212
           V  F S L G GW+ P      P  RH+P PLLT     +P P L  F  + P  Y++  
Sbjct: 355 VNPFLSYLTGNGWQPPPGYVGQPSQRHEPSPLLTDLSA-TPSPSLA-FLPILPSTYMNHG 412

Query: 211 ITVSYHHPMRLKGPFHA 161
           I V+Y     L GP ++
Sbjct: 413 IPVNYGSTNPLPGPSYS 429


>tr|A7SEQ7|A7SEQ7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g27266 PE=4 SV=1
          Length = 97

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = -2

Query: 331 CPSSPRCRHQPCPLLTIFRCMSPHPLLTIFRRMSPHEYIS 212
           CP  P C   P P  T+  CM PHP L +   M PH Y S
Sbjct: 60  CPH-PYCSCVPVPTPTVAVCMCPHPTLAVC--MCPHPYCS 96


>tr|Q0BHI3|Q0BHI3_BURCM ABC transporter related OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_0831 PE=3
           SV=1
          Length = 371

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 312 HRGDDGHLQPMPHRTEQKMPTEPNQNIFACMYVPRIV 422
           H GD  HLQP   R +   PT P+ ++FA +   RIV
Sbjct: 299 HNGDASHLQPFDVRVDVTEPTGPDTHVFAQVNGKRIV 335


>tr|B1YUK7|B1YUK7_BURA4 ABC transporter related OS=Burkholderia
           ambifaria (strain MC40-6) GN=BamMC406_0843 PE=4 SV=1
          Length = 371

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 312 HRGDDGHLQPMPHRTEQKMPTEPNQNIFACMYVPRIV 422
           H GD  HLQP   R +   PT P+ ++FA +   RIV
Sbjct: 299 HNGDASHLQPFDVRVDVTEPTGPDTHVFAQVNGKRIV 335


>tr|B1SX20|B1SX20_9BURK ABC transporter related OS=Burkholderia
           ambifaria MEX-5 GN=BamMEX5DRAFT_0093 PE=4 SV=1
          Length = 371

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 312 HRGDDGHLQPMPHRTEQKMPTEPNQNIFACMYVPRIV 422
           H GD  HLQP   R +   PT P+ ++FA +   RIV
Sbjct: 299 HNGDASHLQPFDVRVDVTEPTGPDTHVFAQVNGKRIV 335


>tr|B1FC60|B1FC60_9BURK ABC transporter related OS=Burkholderia
           ambifaria IOP40-10 GN=BamIOP4010DRAFT_1619 PE=3 SV=1
          Length = 371

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 312 HRGDDGHLQPMPHRTEQKMPTEPNQNIFACMYVPRIV 422
           H GD  HLQP   R +   PT P+ ++FA +   RIV
Sbjct: 299 HNGDASHLQPFDVRVDVTEPTGPDTHVFAQVNGKRIV 335


>tr|Q9R0Z8|Q9R0Z8_RAT Secretory leukocyte protease inhibitor
           OS=Rattus norvegicus GN=Slpi PE=2 SV=1
          Length = 131

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 349 CGIGWRCPSSPRCRHQPCPLLTIFRCMSPHPL 254
           CG  W CP   RC    C     F+C++P P+
Sbjct: 52  CGTDWECPGKQRCCQDTCG----FKCLNPVPI 79