BP914047
Clone id YMU001_000039_C07
Library
Length 412
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TACGGGCGCCACCATCATATGATATATCACCTACACCGGCTATCCAACATCACTCGTCTA
GAACACCCTCTAGAAATATGCCTCGGTGATAACAACATCCAGCTCGCCAAAGCCTATGGA
GATGCTGTCATTAACCTACCTAATGGCCTACACACCACTATTTCTCACCTATATTAGTCC
CTGGTCTCAAGAAAAATCTCATCTCTGTCAGCAAGCTAACCGACAACGGCATCATCATCA
AATTTCATGCGAGAAGGCTGCCACATTTTGCACTAAACAAAGATGGTCAGTATGTCACAC
TTTTGGTCCCCAAAACTGGGCGTCTTTATCCATTGGGTGACTCATCGCCTGCACATGCAT
CTGCATCATCCATAAAAACACAAGAAAACACATTCAAATGGCATTATAGACG
■■Homology search results ■■ -
sp_hit_id Q67EQ0
Definition sp|Q67EQ0|CLC4A_RAT C-type lectin domain family 4 member A OS=Rattus norvegicus
Align length 66
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914047|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C07.
(412 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q67EQ0|CLC4A_RAT C-type lectin domain family 4 member A OS=Ra... 31 1.7
sp|Q750S2|SCC2_ASHGO Sister chromatid cohesion protein 2 OS=Ashb... 30 3.8
sp|Q9QZ15|CLC4A_MOUSE C-type lectin domain family 4 member A OS=... 30 3.8
sp|Q6ZT46|YK027_HUMAN Putative uncharacterized protein FLJ44967 ... 29 6.5
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g... 29 8.4
sp|P74981|HMUV_YEREN Hemin import ATP-binding protein hmuV OS=Ye... 29 8.4
sp|Q6D645|HMUV_ERWCT Hemin import ATP-binding protein hmuV OS=Er... 29 8.4

>sp|Q67EQ0|CLC4A_RAT C-type lectin domain family 4 member A
OS=Rattus norvegicus GN=Clec4a PE=2 SV=1
Length = 240

Score = 31.2 bits (69), Expect = 1.7
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2

Query: 122 MLSLTYLMAYTPLFLTYISPWSQEKSHLCQQANRQRHHHQISCEKAATFCTKQRWSVCHT 301
+L++T+L+A+ F Y S + +EK +A + H +++C K ++ WS C
Sbjct: 56 LLAITFLVAFIIYFQKY-SQFLEEK-----KAIKGITHKELNCIKNVLLMEEKSWSCC-- 107

Query: 302 FGPQNW 319
P+NW
Sbjct: 108 --PKNW 111


>sp|Q750S2|SCC2_ASHGO Sister chromatid cohesion protein 2 OS=Ashbya
gossypii GN=SCC2 PE=3 SV=1
Length = 1479

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2

Query: 378 FLWMMQMHVQAMSHPMDKDAQFWGPKV*HTDHLCLVQNV 262
FLW Q+ V MDK++Q WG K+ L L++++
Sbjct: 614 FLWCKQLDVLTKLKEMDKESQGWGSKL-QQKFLSLIESI 651


>sp|Q9QZ15|CLC4A_MOUSE C-type lectin domain family 4 member A OS=Mus
musculus GN=Clec4a PE=1 SV=1
Length = 238

Score = 30.0 bits (66), Expect = 3.8
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = +2

Query: 122 MLSLTYLMAYTPLFLTYISPWSQEKSHLCQQANRQRHHHQISCEKAATFCTKQRWSVCHT 301
+L++T+L+A F+ Y +SQ ++A + H++++C K+ + + WS C
Sbjct: 56 LLAITFLVA----FIIYFQKYSQLLEE--KKAAKNIMHNELNCTKSVSPMEDKVWSCC-- 107

Query: 302 FGPQNW 319
P++W
Sbjct: 108 --PKDW 111


>sp|Q6ZT46|YK027_HUMAN Putative uncharacterized protein FLJ44967
OS=Homo sapiens PE=5 SV=2
Length = 303

Score = 29.3 bits (64), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2

Query: 95 TSSSPKPMEMLSLTYLMAYTPLFLTYISPWSQEKSHLCQ 211
+ SSP+ + M S L +P L+ SPW KS LC+
Sbjct: 170 SKSSPRGLSMSSPRGLSKSSPRGLSKSSPWGLSKSFLCR 208


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
gambiae GN=nkd PE=2 SV=1
Length = 886

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2

Query: 185 SQEKSHLCQQANRQRHHHQISCEKAATFCTK 277
S K+ LC Q NR++ HH+++ AT T+
Sbjct: 572 SMVKNSLCFQPNRRKEHHRLAAAVGATRSTQ 602


>sp|P74981|HMUV_YEREN Hemin import ATP-binding protein hmuV
OS=Yersinia enterocolitica GN=hmuV PE=1 SV=2
Length = 266

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1

Query: 13 HHMIYHLHRLSNITRLEHPLEICLGDNNIQLAKAYGDAVINLPNG 147
+H + L L +T LE PL +C +++ LA Y D ++ L G
Sbjct: 181 YHQQHTLRLLRQLT-LEEPLAVCCVLHDLNLAALYADRILLLAQG 224


>sp|Q6D645|HMUV_ERWCT Hemin import ATP-binding protein hmuV
OS=Erwinia carotovora subsp. atroseptica GN=hmuV PE=3
SV=1
Length = 265

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1

Query: 13 HHMIYHLHRLSNITRLEHPLEICLGDNNIQLAKAYGDAVINLPNG 147
+H + L L +TR E PL +C +++ LA Y D ++ L G
Sbjct: 180 YHQQHLLRLLKQLTR-EQPLAVCCVLHDLNLAALYADRILLLHEG 223


tr_hit_id A9NWA6
Definition tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 60
Score (bit) 32.3
E-value 0.003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914047|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C07.
(412 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea... 32 0.003
tr|Q9FWG3|Q9FWG3_ORYSA Putative gag/pol polyprotein OS=Oryza sat... 43 0.007
tr|Q9FRJ2|Q9FRJ2_ORYSA Putative copia-like retrotransposon polyp... 43 0.007
tr|Q8S805|Q8S805_ORYSJ Putative copia-type polyprotein OS=Oryza ... 43 0.007
tr|Q336W4|Q336W4_ORYSJ Retrotransposon protein, putative, unclas... 43 0.007
tr|A5CBM6|A5CBM6_VITVI Putative uncharacterized protein OS=Vitis... 41 0.034
tr|A5B4X5|A5B4X5_VITVI Putative uncharacterized protein OS=Vitis... 37 0.056
tr|A5BRC3|A5BRC3_VITVI Putative uncharacterized protein OS=Vitis... 40 0.058
tr|A5C7A6|A5C7A6_VITVI Putative uncharacterized protein OS=Vitis... 39 0.100
tr|A5B7U3|A5B7U3_VITVI Putative uncharacterized protein OS=Vitis... 39 0.13
tr|Q6L3U1|Q6L3U1_SOLDE Putative polyprotein, identical OS=Solanu... 39 0.17
tr|A5BMU9|A5BMU9_VITVI Putative uncharacterized protein OS=Vitis... 37 0.38
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.49
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.49
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.49
tr|Q7G6C4|Q7G6C4_ORYSJ Putative gag-pol polyprotein (Retrotransp... 37 0.65
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.65
tr|A5BQ40|A5BQ40_VITVI Putative uncharacterized protein OS=Vitis... 37 0.65
tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger,... 36 0.84
tr|B6TJ15|B6TJ15_MAIZE Putative uncharacterized protein OS=Zea m... 36 0.84
tr|A5AHZ9|A5AHZ9_VITVI Putative uncharacterized protein OS=Vitis... 33 0.89
tr|A5BMW1|A5BMW1_VITVI Putative uncharacterized protein OS=Vitis... 34 0.95
tr|Q6RZV4|Q6RZV4_MUSAC Retrotransposon-like protein OS=Musa acum... 35 1.4
tr|Q18L98|Q18L98_CITSI Putative gag-pol polyprotein OS=Citrus si... 35 1.4
tr|A2Q5V3|A2Q5V3_MEDTR Peptidase aspartic, catalytic; Polynucleo... 35 1.4
tr|Q60EV4|Q60EV4_ORYSJ Putative polyprotein OS=Oryza sativa subs... 35 1.9
tr|A5C715|A5C715_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|A5AS29|A5AS29_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|Q75IL9|Q75IL9_ORYSJ Pupative polyprotein OS=Oryza sativa subs... 28 3.1
tr|A5BNN7|A5BNN7_VITVI Putative uncharacterized protein OS=Vitis... 34 3.2

>tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 173

Score = 32.3 bits (72), Expect(2) = 0.003
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3

Query: 156 HYFSPILVPGLKKNLISVSKLTDNGIIIKFHARRLPHFALNKDGQYVTLLVPKTGRLYPL 335
H + + VPGL+KNL+S+S L D G I F ++ + + + ++ G LY L
Sbjct: 112 HLSNVLYVPGLEKNLVSISCLEDKGNRIAFIDEKVLSWHKDSSIEDARVIGRHEGNLYRL 171



Score = 31.6 bits (70), Expect(2) = 0.003
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1

Query: 4 GRHHHMIYHLHRLSNITRLEHPLEICLGDNNIQLAKAYGDAVINLPNGLHTTISHL 171
G HM+ RLS++ + ++ LGD + + +G A I L +G H +S++
Sbjct: 61 GASRHMMGDQARLSDLNERKTSYKVELGDKSTYPVEGFGQASIKLESGNHVHLSNV 116


>tr|Q9FWG3|Q9FWG3_ORYSA Putative gag/pol polyprotein OS=Oryza sativa
GN=OSJNBb0015I11.24 PE=4 SV=2
Length = 1417

Score = 43.1 bits (100), Expect = 0.007
Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
H PT H + ++ P L KNLISV KLT DN + I+F L Q V L
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
G LYPL SP SA+S + E+ WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|Q9FRJ2|Q9FRJ2_ORYSA Putative copia-like retrotransposon
polyprotein OS=Oryza sativa GN=OSJNBb0064P21.11 PE=4
SV=1
Length = 1302

Score = 43.1 bits (100), Expect = 0.007
Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
H PT H + ++ P L KNLISV KLT DN + I+F L Q V L
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
G LYPL SP SA+S + E+ WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|Q8S805|Q8S805_ORYSJ Putative copia-type polyprotein OS=Oryza
sativa subsp. japonica GN=OSJNBa0020E23.19 PE=4 SV=1
Length = 1803

Score = 43.1 bits (100), Expect = 0.007
Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
H PT H + ++ P L KNLISV KLT DN + I+F L Q V L
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
G LYPL SP SA+S + E+ WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|Q336W4|Q336W4_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os10g39530 PE=4 SV=2
Length = 1414

Score = 43.1 bits (100), Expect = 0.007
Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
H PT H + ++ P L KNLISV KLT DN + I+F L Q V L
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
G LYPL SP SA+S + E+ WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|A5CBM6|A5CBM6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_030041 PE=4 SV=1
Length = 1429

Score = 40.8 bits (94), Expect = 0.034
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3

Query: 171 ILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLLV--PKTGRLYPLGD 341
+ VP + KNLISV T N +I++FH P + L KD + +L+ P +YPL
Sbjct: 249 LCVPTINKNLISVHHYTKQNNVILEFH----PTYFLAKDWRTGEILLQGPCENGVYPLA- 303

Query: 342 SSPAHASASSIKTQENTFKWHYR 410
SSPA + + + + WH R
Sbjct: 304 SSPAATPIAFVHERTSAXGWHXR 326


>tr|A5B4X5|A5B4X5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_007721 PE=4 SV=1
Length = 631

Score = 36.6 bits (83), Expect(2) = 0.056
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Frame = +3

Query: 150 THHYF---SPILVPGLKKNLISVSKL-TDNGIIIKFHARRLPHFALNKDGQY-VTLLVPK 314
TH+ F + + VP +KKNLIS+S+ T N + I+F LP L KD Q +TLL
Sbjct: 64 THNTFKLNNVLYVPTMKKNLISISQFGTSNNVSIEF----LPTALLVKDIQTGITLLKGN 119

Query: 315 TGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
T SP + SS+KT +WH R
Sbjct: 120 TKDGVNEWPVSPPLLAFSSLKT--TLSEWHQR 149



Score = 22.7 bits (47), Expect(2) = 0.056
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1

Query: 4 GRHHHMIYHLHRLSNITRLEHPLEICLGDNN 96
G HH+ LH LS T +I +GD +
Sbjct: 19 GASHHVTTDLHNLSMHTPYNGSDDIMIGDGS 49


>tr|A5BRC3|A5BRC3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027576 PE=4 SV=1
Length = 1172

Score = 40.0 bits (92), Expect = 0.058
Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +3

Query: 171 ILVPGLKKNLISVSKL-TDNGIIIKFHARRLPHFALNKDGQY-VTLLVPKT-GRLYPLGD 341
+ VPG+KKNLIS+SKL N + I F LP L KD + TLL KT +Y
Sbjct: 293 LCVPGMKKNLISISKLXISNNVSITF----LPSSFLVKDLRTGATLLKGKTKDGVYEWLV 348

Query: 342 SSPAHASASSIKTQENTFKWHYR 410
SSP A SS+KT + +WH+R
Sbjct: 349 SSPLLA-FSSVKTSSS--EWHHR 368


>tr|A5C7A6|A5C7A6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_040762 PE=4 SV=1
Length = 590

Score = 39.3 bits (90), Expect = 0.100
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3

Query: 171 ILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLLV--PKTGRLYPLGD 341
+ VP + KNLISV T N +I++FH P + L KD + +L+ P +YP+
Sbjct: 357 LCVPTINKNLISVHHFTKQNNVILEFH----PTYFLVKDRRTGEILLQGPCENGVYPM-P 411

Query: 342 SSPAHASASSIKTQENTFKWHYR 410
SSPA + + + + WH R
Sbjct: 412 SSPAATPIAFVHERTSVTGWHQR 434


>tr|A5B7U3|A5B7U3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_031906 PE=4 SV=1
Length = 1162

Score = 38.9 bits (89), Expect = 0.13
Identities = 25/77 (32%), Positives = 33/77 (42%)
Frame = +3

Query: 180 PGLKKNLISVSKLTDNGIIIKFHARRLPHFALNKDGQYVTLLVPKTGRLYPLGDSSPAHA 359
PGL NLISV +L DN + F + L PK G+L+PL S P+
Sbjct: 365 PGLSANLISVGQLVDNNCNVSF--------------SHGGCLGPKVGQLFPLQFSIPSAL 410

Query: 360 SASSIKTQENTFKWHYR 410
S + + WH R
Sbjct: 411 SLACSTVSNQSEVWHKR 427