BP914001 |
Clone id |
YMU001_000038_G04 |
Library |
YMU01 |
Length |
493 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000038_G04. |
Accession |
BP914001 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TAGGTTCTGTTTCGTAAGCACATAAACAGTGCCTGTATCACCAACTATAGTAGCTTCTGT TTCATGCGCACATAAGCAGTGTGTGAATCACCAAAATTCAGAACAAGGCATTGCACAAGC CAGTCTTTTACATTTTGAGATAGGAGTTAATCCTGCCGTACGGGTCCTGTACGAGCACGA CTTTCATAGTGACTAGAGGCCAGATGAAGTCTTCTAACACGTGTTGACATCACACTCTCT ACTGGTTCAGGGAAAGTCTTGCCATTGAACCGTCCTTTCGGTTGTAAGAACGACCCTGCA GACGGCCGCCATGCTTCTCTACTATGGAAAAATGGCTTATGAGAAGAAAGACAATATGTA ACAGAATCGGGTTAATGCGAAATGCAAATAATTACCTCCTTGTTTGCACATAAGTTCCTA CATTATTGGAGGCACCTTGTTTGAGCGACTTGATTGAATCACCTCGCGTAGTGGCCTCTG GTTGATGACGATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O74448 |
Definition |
sp|O74448|PIN1_SCHPO Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizosaccharomyces pombe |
Align length |
64 |
Score (bit) |
30.8 |
E-value |
3.5 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q01DV6 |
Definition |
tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococcus tauri |
Align length |
64 |
Score (bit) |
37.0 |
E-value |
0.51 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914001|Adiantum capillus-veneris mRNA, clone: YMU001_000038_G04. (493 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococc... 37 0.51 tr|B6AIF4|B6AIF4_9CRYT DNA-directed RNA polymerase III largest s... 36 1.1 tr|A4RTE2|A4RTE2_OSTLU DNA-directed RNA polymerase OS=Ostreococc... 35 1.5 tr|Q7PMU6|Q7PMU6_ANOGA DNA-directed RNA polymerase OS=Anopheles ... 34 3.3 tr|Q16SE0|Q16SE0_AEDAE DNA-directed RNA polymerase OS=Aedes aegy... 34 3.3 tr|Q16PD2|Q16PD2_AEDAE DNA-directed RNA polymerase OS=Aedes aegy... 34 3.3 tr|B0WFY1|B0WFY1_CULQU DNA-directed RNA polymerase OS=Culex quin... 34 3.3 tr|B6KRB8|B6KRB8_TOXGO DNA-directed RNA polymerase III largest s... 33 5.6
>tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococcus tauri GN=Ot02g06220 PE=3 SV=1 Length = 1406
Score = 37.0 bits (84), Expect = 0.51 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +2
Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIG-VNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235 V+C +Q V+ G A SL HF+ G PA + + F+S RP E F H + Sbjct: 807 VACVGQQAVSGSRPPDGFAHRSLPHFKRGEKTPAAKGFVANSFYSGMRPTEFFFHTMAGR 866
Query: 236 SLLV 247 LV Sbjct: 867 EGLV 870
>tr|B6AIF4|B6AIF4_9CRYT DNA-directed RNA polymerase III largest subunit, putative OS=Cryptosporidium muris RN66 GN=CMU_031360 PE=4 SV=1 Length = 1803
Score = 35.8 bits (81), Expect = 1.1 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = +2
Query: 47 IVASVSCAHKQCVNHQNSEQGIAQASLLHFEIG-VNPAVRVLYEHDFHSD*RPDEVF*HV 223 I V+C +Q V Q + G Q +L HF+I V+ R + F S +PDE F H Sbjct: 788 IAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVDGRSRGFVANSFFSGLQPDEFFFHT 847
Query: 224 LTSHSLLV 247 ++ LV Sbjct: 848 MSGREGLV 855
>tr|A4RTE2|A4RTE2_OSTLU DNA-directed RNA polymerase OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_24022 PE=3 SV=1 Length = 1395
Score = 35.4 bits (80), Expect = 1.5 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +2
Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIG-VNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235 ++C +Q V G A+ SL HF G PA + + F S RP E F H + Sbjct: 806 IACVGQQAVGGSRPPDGFAERSLPHFRRGEKTPAAKGFVANSFFSGMRPTEFFFHTMAGR 865
Query: 236 SLLV 247 LV Sbjct: 866 EGLV 869
>tr|Q7PMU6|Q7PMU6_ANOGA DNA-directed RNA polymerase OS=Anopheles gambiae GN=AGAP004703 PE=3 SV=4 Length = 1379
Score = 34.3 bits (77), Expect = 3.3 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2
Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235 ++C +Q +N + G +L HFE PA R ++ F+S P E F H + Sbjct: 798 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 857
Query: 236 SLLV 247 LV Sbjct: 858 EGLV 861
>tr|Q16SE0|Q16SE0_AEDAE DNA-directed RNA polymerase OS=Aedes aegypti GN=AAEL010617 PE=3 SV=1 Length = 1298
Score = 34.3 bits (77), Expect = 3.3 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2
Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235 ++C +Q +N + G +L HFE PA R ++ F+S P E F H + Sbjct: 717 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 776
Query: 236 SLLV 247 LV Sbjct: 777 EGLV 780
>tr|Q16PD2|Q16PD2_AEDAE DNA-directed RNA polymerase OS=Aedes aegypti GN=AAEL011692 PE=3 SV=1 Length = 1298
Score = 34.3 bits (77), Expect = 3.3 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2
Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235 ++C +Q +N + G +L HFE PA R ++ F+S P E F H + Sbjct: 717 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 776
Query: 236 SLLV 247 LV Sbjct: 777 EGLV 780
>tr|B0WFY1|B0WFY1_CULQU DNA-directed RNA polymerase OS=Culex quinquefasciatus GN=CpipJ_CPIJ006171 PE=3 SV=1 Length = 1303
Score = 34.3 bits (77), Expect = 3.3 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2
Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235 ++C +Q +N + G +L HFE PA R ++ F+S P E F H + Sbjct: 722 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 781
Query: 236 SLLV 247 LV Sbjct: 782 EGLV 785
>tr|B6KRB8|B6KRB8_TOXGO DNA-directed RNA polymerase III largest subunit, putative OS=Toxoplasma gondii ME49 GN=TGME49_106290 PE=4 SV=1 Length = 1746
Score = 33.5 bits (75), Expect = 5.6 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +2
Query: 47 IVASVSCAHKQCVNHQNSEQGIAQASLLHFEIGVNPA-VRVLYEHDFHSD*RPDEVF*HV 223 I ++C +Q V+ Q + G +L HF + A R F+S +PDE F H Sbjct: 867 IAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHT 926
Query: 224 LTSHSLLV 247 ++ LV Sbjct: 927 MSGREGLV 934
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