BP914001
Clone id YMU001_000038_G04
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TAGGTTCTGTTTCGTAAGCACATAAACAGTGCCTGTATCACCAACTATAGTAGCTTCTGT
TTCATGCGCACATAAGCAGTGTGTGAATCACCAAAATTCAGAACAAGGCATTGCACAAGC
CAGTCTTTTACATTTTGAGATAGGAGTTAATCCTGCCGTACGGGTCCTGTACGAGCACGA
CTTTCATAGTGACTAGAGGCCAGATGAAGTCTTCTAACACGTGTTGACATCACACTCTCT
ACTGGTTCAGGGAAAGTCTTGCCATTGAACCGTCCTTTCGGTTGTAAGAACGACCCTGCA
GACGGCCGCCATGCTTCTCTACTATGGAAAAATGGCTTATGAGAAGAAAGACAATATGTA
ACAGAATCGGGTTAATGCGAAATGCAAATAATTACCTCCTTGTTTGCACATAAGTTCCTA
CATTATTGGAGGCACCTTGTTTGAGCGACTTGATTGAATCACCTCGCGTAGTGGCCTCTG
GTTGATGACGATA
■■Homology search results ■■ -
sp_hit_id O74448
Definition sp|O74448|PIN1_SCHPO Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizosaccharomyces pombe
Align length 64
Score (bit) 30.8
E-value 3.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914001|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_G04.
(493 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O74448|PIN1_SCHPO Peptidyl-prolyl cis-trans isomerase pin1 OS... 31 3.5
sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC... 30 6.0
sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC... 30 6.0
sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC... 30 6.0

>sp|O74448|PIN1_SCHPO Peptidyl-prolyl cis-trans isomerase pin1
OS=Schizosaccharomyces pombe GN=pin1 PE=2 SV=1
Length = 175

Score = 30.8 bits (68), Expect = 3.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -3

Query: 347 SSHKPFFHSREA----WRPSAGSFLQPKGRFNGKTFPE---PVESVMSTRVRRLHLASSH 189
S ++P+F + E W P A + + +F E P E+ S ++R HL H
Sbjct: 17 SRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSPKIRASHLLVKH 76

Query: 188 YESR 177
ESR
Sbjct: 77 RESR 80


>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1
OS=Homo sapiens GN=POLR3A PE=1 SV=2
Length = 1390

Score = 30.0 bits (66), Expect = 6.0
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIGVN-PAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q ++ G SL HFE PA + + F+S P E F H +
Sbjct: 796 IACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGR 855

Query: 236 SLLV 247
LV
Sbjct: 856 EGLV 859


>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1
OS=Gallus gallus GN=POLR3A PE=2 SV=1
Length = 1390

Score = 30.0 bits (66), Expect = 6.0
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIGVN-PAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q ++ G SL HFE PA + + F+S P E F H +
Sbjct: 796 IACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGR 855

Query: 236 SLLV 247
LV
Sbjct: 856 EGLV 859


>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1
OS=Bos taurus GN=POLR3A PE=2 SV=1
Length = 1390

Score = 30.0 bits (66), Expect = 6.0
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIGVN-PAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q ++ G SL HFE PA + + F+S P E F H +
Sbjct: 796 IACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGR 855

Query: 236 SLLV 247
LV
Sbjct: 856 EGLV 859


tr_hit_id Q01DV6
Definition tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococcus tauri
Align length 64
Score (bit) 37.0
E-value 0.51
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914001|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_G04.
(493 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococc... 37 0.51
tr|B6AIF4|B6AIF4_9CRYT DNA-directed RNA polymerase III largest s... 36 1.1
tr|A4RTE2|A4RTE2_OSTLU DNA-directed RNA polymerase OS=Ostreococc... 35 1.5
tr|Q7PMU6|Q7PMU6_ANOGA DNA-directed RNA polymerase OS=Anopheles ... 34 3.3
tr|Q16SE0|Q16SE0_AEDAE DNA-directed RNA polymerase OS=Aedes aegy... 34 3.3
tr|Q16PD2|Q16PD2_AEDAE DNA-directed RNA polymerase OS=Aedes aegy... 34 3.3
tr|B0WFY1|B0WFY1_CULQU DNA-directed RNA polymerase OS=Culex quin... 34 3.3
tr|B6KRB8|B6KRB8_TOXGO DNA-directed RNA polymerase III largest s... 33 5.6

>tr|Q01DV6|Q01DV6_OSTTA DNA-directed RNA polymerase OS=Ostreococcus
tauri GN=Ot02g06220 PE=3 SV=1
Length = 1406

Score = 37.0 bits (84), Expect = 0.51
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIG-VNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
V+C +Q V+ G A SL HF+ G PA + + F+S RP E F H +
Sbjct: 807 VACVGQQAVSGSRPPDGFAHRSLPHFKRGEKTPAAKGFVANSFYSGMRPTEFFFHTMAGR 866

Query: 236 SLLV 247
LV
Sbjct: 867 EGLV 870


>tr|B6AIF4|B6AIF4_9CRYT DNA-directed RNA polymerase III largest
subunit, putative OS=Cryptosporidium muris RN66
GN=CMU_031360 PE=4 SV=1
Length = 1803

Score = 35.8 bits (81), Expect = 1.1
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2

Query: 47 IVASVSCAHKQCVNHQNSEQGIAQASLLHFEIG-VNPAVRVLYEHDFHSD*RPDEVF*HV 223
I V+C +Q V Q + G Q +L HF+I V+ R + F S +PDE F H
Sbjct: 788 IAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVDGRSRGFVANSFFSGLQPDEFFFHT 847

Query: 224 LTSHSLLV 247
++ LV
Sbjct: 848 MSGREGLV 855


>tr|A4RTE2|A4RTE2_OSTLU DNA-directed RNA polymerase OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_24022 PE=3 SV=1
Length = 1395

Score = 35.4 bits (80), Expect = 1.5
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFEIG-VNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q V G A+ SL HF G PA + + F S RP E F H +
Sbjct: 806 IACVGQQAVGGSRPPDGFAERSLPHFRRGEKTPAAKGFVANSFFSGMRPTEFFFHTMAGR 865

Query: 236 SLLV 247
LV
Sbjct: 866 EGLV 869


>tr|Q7PMU6|Q7PMU6_ANOGA DNA-directed RNA polymerase OS=Anopheles
gambiae GN=AGAP004703 PE=3 SV=4
Length = 1379

Score = 34.3 bits (77), Expect = 3.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q +N + G +L HFE PA R ++ F+S P E F H +
Sbjct: 798 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 857

Query: 236 SLLV 247
LV
Sbjct: 858 EGLV 861


>tr|Q16SE0|Q16SE0_AEDAE DNA-directed RNA polymerase OS=Aedes aegypti
GN=AAEL010617 PE=3 SV=1
Length = 1298

Score = 34.3 bits (77), Expect = 3.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q +N + G +L HFE PA R ++ F+S P E F H +
Sbjct: 717 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 776

Query: 236 SLLV 247
LV
Sbjct: 777 EGLV 780


>tr|Q16PD2|Q16PD2_AEDAE DNA-directed RNA polymerase OS=Aedes aegypti
GN=AAEL011692 PE=3 SV=1
Length = 1298

Score = 34.3 bits (77), Expect = 3.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q +N + G +L HFE PA R ++ F+S P E F H +
Sbjct: 717 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 776

Query: 236 SLLV 247
LV
Sbjct: 777 EGLV 780


>tr|B0WFY1|B0WFY1_CULQU DNA-directed RNA polymerase OS=Culex
quinquefasciatus GN=CpipJ_CPIJ006171 PE=3 SV=1
Length = 1303

Score = 34.3 bits (77), Expect = 3.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2

Query: 59 VSCAHKQCVNHQNSEQGIAQASLLHFE-IGVNPAVRVLYEHDFHSD*RPDEVF*HVLTSH 235
++C +Q +N + G +L HFE PA R ++ F+S P E F H +
Sbjct: 722 IACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGLTPTEFFFHTMAGR 781

Query: 236 SLLV 247
LV
Sbjct: 782 EGLV 785


>tr|B6KRB8|B6KRB8_TOXGO DNA-directed RNA polymerase III largest
subunit, putative OS=Toxoplasma gondii ME49
GN=TGME49_106290 PE=4 SV=1
Length = 1746

Score = 33.5 bits (75), Expect = 5.6
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2

Query: 47 IVASVSCAHKQCVNHQNSEQGIAQASLLHFEIGVNPA-VRVLYEHDFHSD*RPDEVF*HV 223
I ++C +Q V+ Q + G +L HF + A R F+S +PDE F H
Sbjct: 867 IAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHT 926

Query: 224 LTSHSLLV 247
++ LV
Sbjct: 927 MSGREGLV 934