BP913978 |
Clone id |
YMU001_000038_E04 |
Library |
YMU01 |
Length |
520 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000038_E04. |
Accession |
BP913978 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3996Contig1 |
Sequence |
GGATCAGTAGGGGCTGGTTCAAATGTAGGCCACAGATGGCCGTTGGATTCCCCCTCGACG AGGCAGATTACAAGCGGATGCGAGGCGGGTAAACTGTACTTGATACCATACCATGCAGTT AAGAACATGATCAGATGGTCGGGGACGTACAACAATCATGGTATATCGGGCTGAGCCGGG GGGCCAACGAACAACTAAGACGTGTGGTGAGATATGTTGGCAACAGTGGAATAGCATGTA GGGGTAGTCTATAGATGGCCGATGGGTTCCCCCTCGACAAAGCGGGGCTGTCCACCGAGT GGGAGCGCAACATGAGTGTGCTTGAGAATAGCCAAGGTAGTAGAGGCCAAATCACTATGA CAGGGCGATGCAATGAAAAGGGTGGCAGAATTTTCAGCGGTTTTTGCAAACCAAGTGCGG TGGCGCTCAAGAAGGCATGGAAGGAAGAGATGGCAAATGTGATACATGCACCACATTGCG AGAGGGTAGGCTCCAATGAGCACCAGCCCACGTTTCATTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q811D0 |
Definition |
sp|Q811D0|DLG1_MOUSE Disks large homolog 1 OS=Mus musculus |
Align length |
56 |
Score (bit) |
31.2 |
E-value |
3.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913978|Adiantum capillus-veneris mRNA, clone: YMU001_000038_E04. (520 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q811D0|DLG1_MOUSE Disks large homolog 1 OS=Mus musculus GN=Dl... 31 3.1 sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thalia... 31 4.0 sp|Q7V872|PCBA_PROMM Divinyl chlorophyll a/b light-harvesting pr... 30 5.2 sp|Q86W25|NAL13_HUMAN NACHT, LRR and PYD domains-containing prot... 30 5.3 sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota... 30 6.8 sp|P63937|ALDH_MYCTU Probable aldehyde dehydrogenase OS=Mycobact... 30 6.9 sp|P63938|ALDH_MYCBO Probable aldehyde dehydrogenase OS=Mycobact... 30 6.9 sp|P37685|ALDB_ECOLI Aldehyde dehydrogenase B OS=Escherichia col... 30 6.9 sp|Q3YU89|AMPA_SHISS Probable cytosol aminopeptidase OS=Shigella... 30 8.8 sp|Q83P64|AMPA_SHIFL Probable cytosol aminopeptidase OS=Shigella... 30 8.8 sp|Q0SXK0|AMPA_SHIF8 Probable cytosol aminopeptidase OS=Shigella... 30 8.8 sp|Q328S1|AMPA_SHIDS Probable cytosol aminopeptidase OS=Shigella... 30 8.8 sp|Q31TK2|AMPA_SHIBS Probable cytosol aminopeptidase OS=Shigella... 30 8.8 sp|Q1R2Z4|AMPA_ECOUT Probable cytosol aminopeptidase OS=Escheric... 30 8.8 sp|P68767|AMPA_ECOLI Cytosol aminopeptidase OS=Escherichia coli ... 30 8.8 sp|B1ISB1|AMPA_ECOLC Probable cytosol aminopeptidase OS=Escheric... 30 8.8 sp|P68766|AMPA_ECOL6 Cytosol aminopeptidase OS=Escherichia coli ... 30 8.8 sp|Q0T9D1|AMPA_ECOL5 Probable cytosol aminopeptidase OS=Escheric... 30 8.8 sp|A1AJG3|AMPA_ECOK1 Probable cytosol aminopeptidase OS=Escheric... 30 8.8 sp|A8A816|AMPA_ECOHS Probable cytosol aminopeptidase OS=Escheric... 30 8.8 sp|P68768|AMPA_ECO57 Cytosol aminopeptidase OS=Escherichia coli ... 30 8.8 sp|A7ZVE0|AMPA_ECO24 Probable cytosol aminopeptidase OS=Escheric... 30 8.8 sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase OS=Buchnera... 30 8.8
>sp|Q811D0|DLG1_MOUSE Disks large homolog 1 OS=Mus musculus GN=Dlg1 PE=1 SV=1 Length = 905
Score = 31.2 bits (69), Expect = 3.1 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = -1
Query: 451 ISSFHAFLSATALGLQKPLKILPPFSLHRPVIVIWPLLPWLFSSTLMLRSHSVDSP 284 I + H F+S + + KP + +PP S P++ + P LP ST++L S +P Sbjct: 145 IENVHGFVSHSHISPIKPTEAVPPSS---PIVPVTPALPVPAESTVVLPSAPQANP 197
>sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1 Length = 727
Score = 30.8 bits (68), Expect = 4.0 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -3
Query: 392 NSATLFIASPCHSDLASTTLAILKHTHVALPLGGQPRFVEGEPIGHL*TTP 240 N A + +A C S L +T A++ + H AL + GQ R + I + +TP Sbjct: 7 NKAWIILAILCFSSLIHSTEAVVTYDHKALIINGQRRILISGSIHYPRSTP 57
>sp|Q7V872|PCBA_PROMM Divinyl chlorophyll a/b light-harvesting protein pcbA OS=Prochlorococcus marinus (strain MIT 9313) GN=pcbA PE=2 SV=1 Length = 368
Score = 30.4 bits (67), Expect = 5.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3
Query: 144 DVQQSWYIGLSRGANEQLRRVVRYVGNSGIACRGS 248 DV +WY G S N R + ++G++G+ C G+ Sbjct: 8 DVTYAWYAGNSGVTNRSGRFIASHIGHTGLICFGA 42
>sp|Q86W25|NAL13_HUMAN NACHT, LRR and PYD domains-containing protein 13 OS=Homo sapiens GN=NLRP13 PE=1 SV=2 Length = 1043
Score = 30.4 bits (67), Expect = 5.3 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -1
Query: 484 LSQCGACITFAISSFHAFLSATALGLQKPLKILPPFS 374 ++ CG C TF SF F +A + L++P + PP S Sbjct: 525 INDCGGCTTFTHLSFQEFFAAMSFVLEEP-REFPPHS 560
>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1 Length = 1021
Score = 30.0 bits (66), Expect = 6.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3
Query: 107 GIKYSLPASHPLVICLVEGESNGHLWPTF 21 G++Y+ P+S P +I L NG +WP F Sbjct: 525 GLQYNQPSSFPPMIDLSYNSLNGSIWPEF 553
>sp|P63937|ALDH_MYCTU Probable aldehyde dehydrogenase OS=Mycobacterium tuberculosis GN=Rv0458 PE=3 SV=1 Length = 507
Score = 30.0 bits (66), Expect = 6.9 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Frame = -1
Query: 505 WCSLEPTLSQCGACITFAISSFHAFLSATAL---GLQKPLKILPPFSLHRPVIVIWPLLP 335 W + +P A I A+ F F +A L + + + H P+ V+ ++P Sbjct: 105 WDNGKPVREALAADIPLAVDHFRYFAAAIRAQEGALSQIDEDTVAYHFHEPLGVVGQIIP 164
Query: 334 WLFSSTLMLRSHSVDSPALSRGNPSAIYRLPLHAIPLLPTYLTTRLSCSLAP 179 W F +L + +PAL+ GN + + P P YL + + L P Sbjct: 165 WNFP---ILMAAWKLAPALAAGNTAVL--KPAEQTPASVLYLMSLIGDLLPP 211
>sp|P63938|ALDH_MYCBO Probable aldehyde dehydrogenase OS=Mycobacterium bovis GN=Mb0467 PE=3 SV=1 Length = 507
Score = 30.0 bits (66), Expect = 6.9 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Frame = -1
Query: 505 WCSLEPTLSQCGACITFAISSFHAFLSATAL---GLQKPLKILPPFSLHRPVIVIWPLLP 335 W + +P A I A+ F F +A L + + + H P+ V+ ++P Sbjct: 105 WDNGKPVREALAADIPLAVDHFRYFAAAIRAQEGALSQIDEDTVAYHFHEPLGVVGQIIP 164
Query: 334 WLFSSTLMLRSHSVDSPALSRGNPSAIYRLPLHAIPLLPTYLTTRLSCSLAP 179 W F +L + +PAL+ GN + + P P YL + + L P Sbjct: 165 WNFP---ILMAAWKLAPALAAGNTAVL--KPAEQTPASVLYLMSLIGDLLPP 211
>sp|P37685|ALDB_ECOLI Aldehyde dehydrogenase B OS=Escherichia coli (strain K12) GN=aldB PE=1 SV=2 Length = 512
Score = 30.0 bits (66), Expect = 6.9 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Frame = -1
Query: 505 WCSLEPTLSQCGACITFAISSFHAFLS---ATALGLQKPLKILPPFSLHRPVIVIWPLLP 335 W + +P A + AI F F S A G+ + + H P+ V+ ++P Sbjct: 110 WDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIP 169
Query: 334 WLFSSTLMLRSHSVDSPALSRGN 266 W F L++ S + +PAL+ GN Sbjct: 170 WNF--PLLMASWKM-APALAAGN 189
>sp|Q3YU89|AMPA_SHISS Probable cytosol aminopeptidase OS=Shigella sonnei (strain Ss046) GN=pepA PE=3 SV=1 Length = 503
Score = 29.6 bits (65), Expect = 8.8 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3
Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305 +Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S + Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284
Query: 306 RNMSVLE 326 M ++ Sbjct: 285 EGMDEMK 291
>sp|Q83P64|AMPA_SHIFL Probable cytosol aminopeptidase OS=Shigella flexneri GN=pepA PE=3 SV=1 Length = 503
Score = 29.6 bits (65), Expect = 8.8 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3
Query: 129 DQMVGDVQQSWYIGLSRGA-NEQLRRVVRYVGNSGIACRGSL*MADGFPLDKAGLSTEWE 305 +Q + ++ Y+ + +G+ NE L V+ Y GN+ R + + G D G+S + Sbjct: 225 EQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPS 284
Query: 306 RNMSVLE 326 M ++ Sbjct: 285 EGMDEMK 291
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A4Y6V4 |
Definition |
tr|A4Y6V4|A4Y6V4_SHEPC Bile acid:sodium symporter OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) |
Align length |
92 |
Score (bit) |
36.2 |
E-value |
1.0 |
Report |
|