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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913948
Clone id YMU001_000038_B10
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCCTCGTCGCCTTATCTGCTTCAAATACCTCGTGGATTCTGCAAGCTTCGACTCTGCTCA
CTACATCAATCATCAAGCTTCAGTAGTTATTAATTATCCTGCTTTGTGCGCTTGCACTTA
CTTATCTGCCGTTTATGAATTTTTACGTCTCCTCTAATCCACTTGCTCTGGTCGCCTTTG
ATGCTCCGCCTCTCTTTTCTTGAGTACCTTATCTGCTCTTGCCAAGCATCCTTTCCCTTG
CCTTACCTACTCTTGCCAAGCATCCTTTGCCTTACCTAGTGCTTCACCGGATTCAAGCCT
GTTCCCCTACAATTCCCTTTGCCAAGAGAGAGATCCTTTATCTTGCCGAGCATGAGAGCG
AGAGAGAGGGATCTTTGCCCTTGCTCCCTTCATACCTTTGTCATATTTGCAATAGATCCC
AAGAAAATACAGGTCATTGTGGATTGGCCTTTACCACTCACTATCTCAGATGTGCGCTCT
TTTTTGGGACTTGCAAATTTCTATCATAC
■■Homology search results ■■ -
sp_hit_id P10401
Definition sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster
Align length 30
Score (bit) 36.6
E-value 0.07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913948|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_B10.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    37   0.070
sp|P92523|M860_ARATH Uncharacterized mitochondrial protein AtMg0...    37   0.070
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra...    34   0.35 
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra...    34   0.46 
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra...    32   1.3  
sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapien...    30   6.6  
sp|Q3A218|CNPD_PELCD 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    30   6.6  
sp|A8EU19|PNP_ARCB4 Polyribonucleotide nucleotidyltransferase OS...    30   8.6  
sp|Q96687|DNB2_ADECR Early E2A DNA-binding protein OS=Canine ade...    30   8.6  
sp|Q65956|DNB2_ADECC Early E2A DNA-binding protein OS=Canine ade...    30   8.6  

>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
           transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1035

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +1

Query: 415 DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           DP+K++ I ++P P  +  VRSFLGLA++Y
Sbjct: 398 DPEKVKAIQEYPEPDCVYKVRSFLGLASYY 427


>sp|P92523|M860_ARATH Uncharacterized mitochondrial protein
           AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
          Length = 158

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 415 DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           DP K++ +V WP P   +++R FLGL  +Y
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYY 76


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
           transposon opus OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1003

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +1

Query: 415 DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           DPKK++ I + P P ++ +++ FLG+ ++Y
Sbjct: 339 DPKKVRAISEMPPPTSVKELKRFLGMTSYY 368


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
           transposon 297 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1059

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 415 DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           +P K++ IV +P+P    ++R+FLGL  +Y
Sbjct: 422 NPIKVKAIVSYPIPTKDKEIRAFLGLTGYY 451


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
           transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1058

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 415 DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           +P+KI+ I  +P+P    ++++FLGL  +Y
Sbjct: 423 NPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452


>sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens
            GN=NBEAL2 PE=1 SV=2
          Length = 2754

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 363  REGSLPLLPSYLCHICNRSQEN 428
            R GSLPLLP  +C I  R Q+N
Sbjct: 1168 RPGSLPLLPDRVCKILRRLQQN 1189


>sp|Q3A218|CNPD_PELCD 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
           GN=Pcar_2350 PE=3 SV=1
          Length = 520

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -3

Query: 297 LESGEALGKAKDAWQE*VRQGKGCLARADKVLKKREAEHQRRPEQVD*R 151
           ++  +AL +AK AW++  R+ +  L   +K L +RE    R+  QVD R
Sbjct: 60  IQKKDALLEAKTAWEQEAREMRRELQAQEKRLVQREENLDRKVAQVDAR 108


>sp|A8EU19|PNP_ARCB4 Polyribonucleotide nucleotidyltransferase
           OS=Arcobacter butzleri (strain RM4018) GN=pnp PE=3 SV=1
          Length = 725

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 331 RSFILPSMRARERDLCPC-SLHTFVIFAIDPKKIQVIV 441
           R+ IL  M+  E+D+ P  +L     FAIDP KI V++
Sbjct: 550 RTHILSLMKDAEKDIVPSGALPLIEQFAIDPSKIMVVI 587


>sp|Q96687|DNB2_ADECR Early E2A DNA-binding protein OS=Canine
           adenovirus serotype 1 (strain RI261) GN=DBP PE=3 SV=1
          Length = 454

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 291 IQACSPTIPFAKREILYLAEHESEREGSLPLLPSYLCHICNRSQENTGH 437
           ++AC P++P A+  +L   + E     SLPLL    C I   S  +  H
Sbjct: 305 LKACYPSMPNAESHLLMPLKCECNWNSSLPLLGRQTCKITPFSLASANH 353


>sp|Q65956|DNB2_ADECC Early E2A DNA-binding protein OS=Canine
           adenovirus serotype 1 (strain CLL) GN=DBP PE=3 SV=1
          Length = 454

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 291 IQACSPTIPFAKREILYLAEHESEREGSLPLLPSYLCHICNRSQENTGH 437
           ++AC P++P A+  +L   + E     SLPLL    C I   S  +  H
Sbjct: 305 LKACYPSMPNAESHLLMPLKCECNWNSSLPLLGRQTCKITPFSLASASH 353
tr_hit_id Q2HRZ3
Definition tr|Q2HRZ3|Q2HRZ3_MEDTR FAR1; Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula
Align length 71
Score (bit) 52.0
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913948|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_B10.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HRZ3|Q2HRZ3_MEDTR FAR1; Polynucleotidyl transferase, Ribonu...    52   2e-05
tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 ...    50   8e-05
tr|Q75LZ2|Q75LZ2_ORYSJ Putative polyprotein OS=Oryza sativa subs...    49   1e-04
tr|Q0KIP8|Q0KIP8_SOLDE Putative uncharacterized protein OS=Solan...    48   2e-04
tr|Q9P970|Q9P970_9AGAR Reverse transcriptase (Fragment) OS=Trich...    48   2e-04
tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris ...    48   3e-04
tr|Q75J00|Q75J00_ORYSJ Retrotransposon protein, putative, Ty3-gy...    47   4e-04
tr|Q10JP7|Q10JP7_ORYSJ Retrotransposon protein, putative, Ty3-gy...    47   4e-04
tr|Q2A9Z5|Q2A9Z5_ASPOF Gag-pol polyprotein, putative OS=Asparagu...    47   5e-04
tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus ...    47   7e-04
tr|A5BU14|A5BU14_VITVI Putative uncharacterized protein OS=Vitis...    47   7e-04
tr|A5B322|A5B322_VITVI Putative uncharacterized protein OS=Vitis...    47   7e-04
tr|A5AVS3|A5AVS3_VITVI Putative uncharacterized protein OS=Vitis...    47   7e-04
tr|A5AV60|A5AV60_VITVI Putative uncharacterized protein OS=Vitis...    47   7e-04
tr|A5ACJ6|A5ACJ6_VITVI Putative uncharacterized protein OS=Vitis...    47   7e-04
tr|Q8W5B7|Q8W5B7_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    46   0.001
tr|Q10GH3|Q10GH3_ORYSJ Retrotransposon protein, putative, Ty3-gy...    46   0.001
tr|A8P8S9|A8P8S9_COPC7 Putative uncharacterized protein OS=Copri...    46   0.001
tr|A8NP79|A8NP79_COPC7 Putative uncharacterized protein OS=Copri...    46   0.001
tr|A8NDY9|A8NDY9_COPC7 Putative uncharacterized protein OS=Copri...    46   0.001
tr|Q5JPW6|Q5JPW6_ORYSA OSJNBa0085C10.25 protein OS=Oryza sativa ...    46   0.001
tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa G...    46   0.001
tr|Q9P958|Q9P958_TRIMT Reverse transcriptase-RNase H (Fragment) ...    46   0.001
tr|Q9ZPF8|Q9ZPF8_ARATH F5K24.9 protein OS=Arabidopsis thaliana G...    45   0.002
tr|Q9SY43|Q9SY43_ARATH Putative reverse transcriptase OS=Arabido...    45   0.002
tr|Q9LKU4|Q9LKU4_ARATH Putative uncharacterized protein T32B20.f...    45   0.002
tr|A5BGV5|A5BGV5_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q850T1|Q850T1_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    45   0.002
tr|A5BLY2|A5BLY2_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A8PFP8|A8PFP8_COPC7 Putative uncharacterized protein OS=Copri...    45   0.002

>tr|Q2HRZ3|Q2HRZ3_MEDTR FAR1; Polynucleotidyl transferase,
           Ribonuclease H fold OS=Medicago truncatula
           GN=MtrDRAFT_AC157777g26v2 PE=4 SV=2
          Length = 657

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +1

Query: 292 FKPVPLQFPLPRERSFILPSMRARERDLCPCSLHTFVIFAIDPKKIQVIVDWPLPLTISD 471
           FKP+  +F LP +R+ ILPS       L P   H  V  A+DP KI+ ++ WP+P  +  
Sbjct: 42  FKPLLRKFVLPIKRNAILPSS---VEYLGPIISHEGV--AMDPAKIKCVLQWPVPKHVKG 96

Query: 472 VRSFLGLANFY 504
           VR FLGL ++Y
Sbjct: 97  VRGFLGLTSYY 107


>tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4
           SV=1
          Length = 1542

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +1

Query: 412 IDPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           +DPKK+Q IVDW  P  + D+RSFLGLAN+Y
Sbjct: 822 MDPKKVQAIVDWQAPRHVKDLRSFLGLANYY 852


>tr|Q75LZ2|Q75LZ2_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
            japonica GN=P0676G05.19 PE=4 SV=2
          Length = 2108

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 26/30 (86%)
 Frame = +1

Query: 415  DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
            DP+KIQV+  WP+P+++ DVRSFLGLA +Y
Sbjct: 1502 DPEKIQVVRQWPVPVSVKDVRSFLGLAGYY 1531


>tr|Q0KIP8|Q0KIP8_SOLDE Putative uncharacterized protein OS=Solanum
           demissum GN=SDM1_41t00011 PE=4 SV=1
          Length = 959

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +1

Query: 412 IDPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           +DPKK+ V+  WP PLT +D+RSFLGLA +Y
Sbjct: 647 VDPKKMDVVKGWPRPLTPTDIRSFLGLAGYY 677


>tr|Q9P970|Q9P970_9AGAR Reverse transcriptase (Fragment)
           OS=Tricholoma bakamatsutake GN=pol PE=4 SV=1
          Length = 434

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +1

Query: 412 IDPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           +DP K+Q I DWP+P  I++V++FLGLANFY
Sbjct: 226 MDPIKVQAIFDWPVPTRITEVQAFLGLANFY 256


>tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris
           PE=4 SV=1
          Length = 1501

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 17/32 (53%), Positives = 26/32 (81%)
 Frame = +1

Query: 409 AIDPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           ++DP KIQ + +WP P +++D+RSFLGLA +Y
Sbjct: 769 SVDPAKIQAVSEWPTPKSVTDIRSFLGLAGYY 800


>tr|Q75J00|Q75J00_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           sub-class OS=Oryza sativa subsp. japonica GN=Os03g29940
           PE=4 SV=1
          Length = 1223

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +1

Query: 412 IDPKKIQVIVDWPLPLTISDVRSFLGLANFYH 507
           +D  KI+ I  WP+P TI+ VRSFLGLA FYH
Sbjct: 711 VDEMKIKAIKSWPVPQTITQVRSFLGLAGFYH 742


>tr|Q10JP7|Q10JP7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g29940 PE=4 SV=1
          Length = 1211

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +1

Query: 412 IDPKKIQVIVDWPLPLTISDVRSFLGLANFYH 507
           +D  KI+ I  WP+P TI+ VRSFLGLA FYH
Sbjct: 727 VDEMKIKAIKSWPVPQTITQVRSFLGLAGFYH 758


>tr|Q2A9Z5|Q2A9Z5_ASPOF Gag-pol polyprotein, putative OS=Asparagus
           officinalis GN=20.t00045 PE=4 SV=1
          Length = 358

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +1

Query: 415 DPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           DP+K+Q IV+WP P +I DVRSF GLA FY
Sbjct: 160 DPQKVQAIVEWPEPRSIRDVRSFHGLATFY 189


>tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus
           PE=4 SV=1
          Length = 871

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +1

Query: 409 AIDPKKIQVIVDWPLPLTISDVRSFLGLANFY 504
           A+DPKKI+ I DWP   +++++RSFLGLA +Y
Sbjct: 226 AVDPKKIEAIKDWPRLTSVTEIRSFLGLAGYY 257