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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913941
Clone id YMU001_000038_B03
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTCTTCTAGATTCACATGCTCTAGGGTGTACCTGCTATTGAATCGAGCCTAAAGAAAT
TTGACCCTTTCTCAATTTCCGTCCAATATGGATGGATTCCATGAGAAGTATGTTGTTATC
CCCATAGTGCTTCCCTGCACTTCTAGTTTTCCACTATCCAGCTTAGAATCCATCTCTTGA
TCTTCTAAAGGTTCGGACCAATCTACCATCCTAAATAACTAGGTTTGCTACATGAACAAG
AGGGGGGGGTTGTCAACCTAAGAACAAGAATTAGACAAGCTCGAGCTTTCATGTGGATGC
CACATGGATAGCTTAGATGAGCTTTGTTGCAAAAATTGCTCCCTTACGCTTCCGAT
■■Homology search results ■■ -
sp_hit_id Q63P06
Definition sp|Q63P06|RBSA_BURPS Ribose import ATP-binding protein rbsA OS=Burkholderia pseudomallei
Align length 34
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913941|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_B03.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q63P06|RBSA_BURPS Ribose import ATP-binding protein rbsA OS=B...    31   2.2  
sp|Q3JHZ1|RBSA2_BURP1 Ribose import ATP-binding protein rbsA 2 O...    31   2.2  
sp|Q39GY8|RBSA1_BURS3 Ribose import ATP-binding protein rbsA 1 O...    30   2.9  
sp|Q0BFU0|RBSA1_BURCM Ribose import ATP-binding protein rbsA 1 O...    30   2.9  
sp|A0K718|RBSA1_BURCH Ribose import ATP-binding protein rbsA 1 O...    29   6.5  
sp|Q1BWN5|RBSA1_BURCA Ribose import ATP-binding protein rbsA 1 O...    29   6.5  
sp|Q68UT5|MS18A_PANTR Protein Mis18-alpha OS=Pan troglodytes GN=...    29   6.5  
sp|Q9NYP9|MS18A_HUMAN Protein Mis18-alpha OS=Homo sapiens GN=MIS...    29   6.5  
sp|Q2T8T6|RBSA2_BURTA Ribose import ATP-binding protein rbsA 2 O...    29   8.5  

>sp|Q63P06|RBSA_BURPS Ribose import ATP-binding protein rbsA
           OS=Burkholderia pseudomallei GN=rbsA PE=3 SV=1
          Length = 517

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+IH+GR+LR+G    G+I      R C+
Sbjct: 100 NLSVAENIHVGRELRRGNGRRGTIDRAAMARGCQ 133


>sp|Q3JHZ1|RBSA2_BURP1 Ribose import ATP-binding protein rbsA 2
           OS=Burkholderia pseudomallei (strain 1710b) GN=rbsA2
           PE=3 SV=1
          Length = 517

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+IH+GR+LR+G    G+I      R C+
Sbjct: 100 NLSVAENIHVGRELRRGNGRRGTIDRAAMARGCQ 133


>sp|Q39GY8|RBSA1_BURS3 Ribose import ATP-binding protein rbsA 1
           OS=Burkholderia sp. (strain 383) GN=rbsA1 PE=3 SV=1
          Length = 517

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+I+IGR+LR+G    G+I      R CE
Sbjct: 100 NLSVAENIYIGRELRRGNRRWGTIDRAAMARGCE 133


>sp|Q0BFU0|RBSA1_BURCM Ribose import ATP-binding protein rbsA 1
           OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
           GN=rbsA1 PE=3 SV=1
          Length = 517

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+I++GR+LR+G    G+I      R CE
Sbjct: 100 NLTVAENIYVGRELRRGNRRWGTIDRAAMARGCE 133


>sp|A0K718|RBSA1_BURCH Ribose import ATP-binding protein rbsA 1
           OS=Burkholderia cenocepacia (strain HI2424) GN=rbsA1
           PE=3 SV=1
          Length = 517

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+I++GR+LR+G    G+I      R C+
Sbjct: 100 NLTVAENIYVGRELRRGNRRWGTIDRAAMARGCQ 133


>sp|Q1BWN5|RBSA1_BURCA Ribose import ATP-binding protein rbsA 1
           OS=Burkholderia cenocepacia (strain AU 1054) GN=rbsA1
           PE=3 SV=1
          Length = 517

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+I++GR+LR+G    G+I      R C+
Sbjct: 100 NLTVAENIYVGRELRRGNRRWGTIDRAAMARGCQ 133


>sp|Q68UT5|MS18A_PANTR Protein Mis18-alpha OS=Pan troglodytes
           GN=MIS18A PE=3 SV=1
          Length = 232

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 262 EQELDKLELSCGCHMDSLDELCCKNCSLTL 351
           EQ+L K E   GC    L+ LCC  CSL L
Sbjct: 121 EQKLSKREKENGC---VLETLCCAGCSLNL 147


>sp|Q9NYP9|MS18A_HUMAN Protein Mis18-alpha OS=Homo sapiens GN=MIS18A
           PE=1 SV=1
          Length = 233

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 262 EQELDKLELSCGCHMDSLDELCCKNCSLTL 351
           EQ+L K E   GC    L+ LCC  CSL L
Sbjct: 122 EQKLSKREKENGC---VLETLCCAGCSLNL 148


>sp|Q2T8T6|RBSA2_BURTA Ribose import ATP-binding protein rbsA 2
           OS=Burkholderia thailandensis (strain E264 / ATCC 700388
           / DSM 13276 / CIP 106301) GN=rbsA2 PE=3 SV=1
          Length = 517

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 114 NILLMESIHIGRKLRKGQISLGSIQ*QVHPRACE 13
           N+ + E+I++GR+LR+G    G+I      R C+
Sbjct: 100 NLTVAENIYVGRELRRGNGRWGTIDRAAMARGCQ 133
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913941|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_B03.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******