BP913901
Clone id YMU001_000037_F04
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTTTTAAAGCAACAAATGGCCATAAGACCAACCATCCCTTAAGCAA
GCCCTAGTCACAAGCACTTACATGGGCTTTTCTTGTAAAACAAACTCACAAGGAACAACA
GAATTTGTGAGACGACTTATTCTTTAATTTGAATCGTTAATAGTCACAAGACTTCAAAAC
TCTTTAGAGACGAGCATTATGTCTCTGGCCTGAACATGCAGGCTGAACACATCTCCAGTT
TGCACCACCAGTTTATCAAGCAATGAAGAAATTTAACTACTCTCTTGAAATGCCATGGAG
TGTGACAATGCCACTGGATTTGCATTCTGTGTTTTGACAGCTGCAATGCCGGTCTCCTTC
GCATGACATTGAAATGCAGCCTCCTTTTTTCCCGAAACCAGAGAACCTTCTGTATCTCTA
ATGCCTAGGGTTGACCAAATCGCACTTCGGGCTGCTTCATCTACATCTTTTATCCTTAAG
GTCTTGGGAACCCAGACACGCACTTCACACGGTTCACTGAGTT
■■Homology search results ■■ -
sp_hit_id Q93ZL5
Definition sp|Q93ZL5|DOF52_ARATH Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana
Align length 79
Score (bit) 59.7
E-value 7.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913901|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F04.
(504 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q93ZL5|DOF52_ARATH Dof zinc finger protein DOF5.2 OS=Arabidop... 60 7e-09
sp|Q8W1E3|DOF55_ARATH Dof zinc finger protein DOF5.5 OS=Arabidop... 53 7e-07
sp|Q8LFV3|DOF33_ARATH Dof zinc finger protein DOF3.3 OS=Arabidop... 48 3e-05
sp|Q6CRY2|MED14_KLULA Mediator of RNA polymerase II transcriptio... 30 6.5

>sp|Q93ZL5|DOF52_ARATH Dof zinc finger protein DOF5.2 OS=Arabidopsis
thaliana GN=DOF5.2 PE=1 SV=2
Length = 457

Score = 59.7 bits (143), Expect = 7e-09
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Frame = -3

Query: 478 VWVPKTLRIKDVDEAARSAIWSTLGIR-----DTEGSLVSGKKEAAFQCHAKETGIAAVK 314
+WVPKTLRI D +EAA+S+IW TLGI+ DT G+ S KE + + G
Sbjct: 381 LWVPKTLRIDDPEEAAKSSIWETLGIKKDENADTFGAFRSSTKEKSSLSEGRLPG--RRP 438

Query: 313 TQNANPVALSHSMAFQESS 257
ANP ALS S F ESS
Sbjct: 439 ELQANPAALSRSANFHESS 457


>sp|Q8W1E3|DOF55_ARATH Dof zinc finger protein DOF5.5 OS=Arabidopsis
thaliana GN=DOF5.5 PE=1 SV=2
Length = 298

Score = 53.1 bits (126), Expect = 7e-07
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = -3

Query: 478 VWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVSGKKEAAFQCHAKETGIAAVKTQNAN 299
V VPKTLRI D +EAA+S+IW+TLGI++ G K+ + +ET + V AN
Sbjct: 227 VLVPKTLRIDDPNEAAKSSIWTTLGIKNEVMFNGFGSKKEVKLSNKEETETSLVLC--AN 284

Query: 298 PVALSHSMAFQE 263
P ALS S+ F E
Sbjct: 285 PAALSRSINFHE 296


>sp|Q8LFV3|DOF33_ARATH Dof zinc finger protein DOF3.3 OS=Arabidopsis
thaliana GN=DOF3.3 PE=1 SV=2
Length = 448

Score = 47.8 bits (112), Expect = 3e-05
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = -3

Query: 478 VWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVSGKKEAAFQCHAKETGIAAVKTQ--- 308
V VPKTLRI D +EAA+S+IW+TLGI++ E +G F K +
Sbjct: 373 VLVPKTLRIDDPNEAAKSSIWTTLGIKN-EAMCKAGGMFKGFDHKTKMYNNDKAENSPVL 431

Query: 307 NANPVALSHSMAFQE 263
+ANP ALS S F E
Sbjct: 432 SANPAALSRSHNFHE 446


>sp|Q6CRY2|MED14_KLULA Mediator of RNA polymerase II transcription
subunit 14 OS=Kluyveromyces lactis GN=RGR1 PE=3 SV=1
Length = 998

Score = 30.0 bits (66), Expect = 6.5
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1

Query: 211 HLQFAPPVYQAMKKFNYSLEMPWSVTMPLDLHSV 312
+LQF P+++A K+ +Y+ P +V M L +HS+
Sbjct: 813 YLQFTLPLFRASKEADYTSSSPSTVKMHLFMHSL 846


tr_hit_id Q0JNV4
Definition tr|Q0JNV4|Q0JNV4_ORYSJ Os01g0264000 protein (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 82
Score (bit) 65.9
E-value 1.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913901|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F04.
(504 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0JNV4|Q0JNV4_ORYSJ Os01g0264000 protein (Putative uncharacte... 66 1e-09
tr|A7PMX9|A7PMX9_VITVI Chromosome chr14 scaffold_21, whole genom... 65 2e-09
tr|Q84PD2|Q84PD2_ORYSJ Os07g0685000 protein OS=Oryza sativa subs... 64 5e-09
tr|B8B645|B8B645_ORYSI Putative uncharacterized protein OS=Oryza... 64 5e-09
tr|A3BNJ2|A3BNJ2_ORYSJ Putative uncharacterized protein OS=Oryza... 64 5e-09
tr|Q8S7W1|Q8S7W1_ORYSJ Os03g0169600 protein OS=Oryza sativa subs... 62 1e-08
tr|A2XD01|A2XD01_ORYSI Putative uncharacterized protein OS=Oryza... 62 1e-08
tr|Q14DX9|Q14DX9_PICAB Dof domain zinc finger DNA-binding protei... 62 2e-08
tr|A7PDL2|A7PDL2_VITVI Chromosome chr17 scaffold_12, whole genom... 62 2e-08
tr|B6SY12|B6SY12_MAIZE Putative uncharacterized protein OS=Zea m... 61 3e-08
tr|A5CAA8|A5CAA8_VITVI Putative uncharacterized protein OS=Vitis... 60 6e-08
tr|Q5XF25|Q5XF25_ARATH At5g39660 OS=Arabidopsis thaliana PE=2 SV=1 60 8e-08
tr|Q5NBP4|Q5NBP4_ORYSJ Ascorbate oxidase promoter-binding protei... 59 1e-07
tr|B8ACJ1|B8ACJ1_ORYSI Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|A2ZRS8|A2ZRS8_ORYSJ Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|B6SVL9|B6SVL9_MAIZE Putative uncharacterized protein OS=Zea m... 57 4e-07
tr|A5AJU8|A5AJU8_VITVI Putative uncharacterized protein OS=Vitis... 57 4e-07
tr|B4FDH4|B4FDH4_MAIZE Putative uncharacterized protein OS=Zea m... 57 5e-07
tr|A7QRG2|A7QRG2_VITVI Chromosome chr8 scaffold_150, whole genom... 57 5e-07
tr|B6T7K6|B6T7K6_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06
tr|B7FLM6|B7FLM6_MEDTR Putative uncharacterized protein OS=Medic... 55 2e-06
tr|B6SWQ6|B6SWQ6_MAIZE Putative uncharacterized protein OS=Zea m... 55 2e-06
tr|Q4ACT9|Q4ACT9_ARATH Cyclic dof factor 1 OS=Arabidopsis thalia... 53 7e-06
tr|B8BGR5|B8BGR5_ORYSI Putative uncharacterized protein OS=Oryza... 51 4e-05
tr|Q39540|Q39540_CUCMA AOBP (Ascorbate oxidase promoter-binding ... 50 5e-05
tr|Q948I5|Q948I5_ORYSA Putative H-protein promoter binding facto... 50 6e-05
tr|Q338F9|Q338F9_ORYSJ Dof domain, zinc finger family protein, e... 50 6e-05
tr|A3C4K8|A3C4K8_ORYSJ Putative uncharacterized protein OS=Oryza... 50 6e-05
tr|B6ZAF7|B6ZAF7_HELPE Cycling DOF factor 2 (Fragment) OS=Helian... 47 4e-04
tr|B6ZAE9|B6ZAE9_HELAN Cycling DOF factor 2 (Fragment) OS=Helian... 47 4e-04

>tr|Q0JNV4|Q0JNV4_ORYSJ Os01g0264000 protein (Putative
uncharacterized protein) OS=Oryza sativa subsp. japonica
GN=Os01g0264000 PE=4 SV=1
Length = 551

Score = 65.9 bits (159), Expect = 1e-09
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Frame = -3

Query: 487 EVRVWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVSGKKEAAFQCHAKETGIAAVKTQ 308
E +WVPKTLRI D DEAA+S+IW+TLGI+ + + FQ + G AA +T+
Sbjct: 475 EKSLWVPKTLRIDDPDEAAKSSIWATLGIKPGDPGIFK-----PFQSKGESKGQAASETR 529

Query: 307 -----NANPVALSHSMAFQESS 257
ANP ALS S +FQE+S
Sbjct: 530 PARALKANPAALSRSQSFQETS 551


>tr|A7PMX9|A7PMX9_VITVI Chromosome chr14 scaffold_21, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020987001
PE=4 SV=1
Length = 268

Score = 65.1 bits (157), Expect = 2e-09
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Frame = -3

Query: 499 SEPCEVRVWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVS-GKKEAAFQCHAKETGIA 323
SE C +W+PKTLRI D EAARS+IW+TLGI++ + +S G+ +FQ A E
Sbjct: 188 SERC---LWIPKTLRIDDPGEAARSSIWATLGIKNDKADPISGGRLFKSFQSKADEKNHI 244

Query: 322 AVKTQ--NANPVALSHSMAFQESS 257
A + ANP ALS S+ F ESS
Sbjct: 245 AETSPVLQANPAALSRSLNFHESS 268


>tr|Q84PD2|Q84PD2_ORYSJ Os07g0685000 protein OS=Oryza sativa subsp.
japonica GN=Os07g0685000 PE=2 SV=1
Length = 476

Score = 63.5 bits (153), Expect = 5e-09
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = -3

Query: 496 EPCEVRVWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVSGKKEAAFQCHAKETGIAAV 317
+ E +W+PKTLRI D DEAA+S+IW+TLGI + S+ + + ++E A
Sbjct: 400 DKAEKNLWIPKTLRIDDPDEAAKSSIWTTLGIEPGDRSMF---RSFQSKPESREQISGAA 456

Query: 316 KTQNANPVALSHSMAFQESS 257
+ ANP ALS S +FQE++
Sbjct: 457 RVLQANPAALSRSQSFQETT 476


>tr|B8B645|B8B645_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27376 PE=4 SV=1
Length = 476

Score = 63.5 bits (153), Expect = 5e-09
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = -3

Query: 496 EPCEVRVWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVSGKKEAAFQCHAKETGIAAV 317
+ E +W+PKTLRI D DEAA+S+IW+TLGI + S+ + + ++E A
Sbjct: 400 DKAEKNLWIPKTLRIDDPDEAAKSSIWTTLGIEPGDRSMF---RSFQSKPESREQISGAA 456

Query: 316 KTQNANPVALSHSMAFQESS 257
+ ANP ALS S +FQE++
Sbjct: 457 RVLQANPAALSRSQSFQETT 476


>tr|A3BNJ2|A3BNJ2_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_024614 PE=4 SV=1
Length = 438

Score = 63.5 bits (153), Expect = 5e-09
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = -3

Query: 496 EPCEVRVWVPKTLRIKDVDEAARSAIWSTLGIRDTEGSLVSGKKEAAFQCHAKETGIAAV 317
+ E +W+PKTLRI D DEAA+S+IW+TLGI + S+ + + ++E A
Sbjct: 362 DKAEKNLWIPKTLRIDDPDEAAKSSIWTTLGIEPGDRSMF---RSFQSKPESREQISGAA 418

Query: 316 KTQNANPVALSHSMAFQESS 257
+ ANP ALS S +FQE++
Sbjct: 419 RVLQANPAALSRSQSFQETT 438


>tr|Q8S7W1|Q8S7W1_ORYSJ Os03g0169600 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0091P11.8 PE=2 SV=1
Length = 440

Score = 62.4 bits (150), Expect = 1e-08
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Frame = -3

Query: 481 RVWVPKTLRIKDVDEAARSAIWSTLGIRDTE-----------GSLVSGKKEAAFQCHAKE 335
+VWVPKT+RI DVDE ARS+IWS +GI+ + + K EA H
Sbjct: 358 KVWVPKTVRIDDVDEVARSSIWSLIGIKGDKVGADHGRGCKLAKVFESKDEAKASTH--- 414

Query: 334 TGIAAVKTQNANPVALSHSMAFQESS 257
T I+++ NP AL+ S+ FQE S
Sbjct: 415 TAISSLPFMQGNPAALTRSVTFQEGS 440


>tr|A2XD01|A2XD01_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_10186 PE=4 SV=1
Length = 338

Score = 62.4 bits (150), Expect = 1e-08
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Frame = -3

Query: 481 RVWVPKTLRIKDVDEAARSAIWSTLGIRDTE-----------GSLVSGKKEAAFQCHAKE 335
+VWVPKT+RI DVDE ARS+IWS +GI+ + + K EA H
Sbjct: 256 KVWVPKTVRIDDVDEVARSSIWSLIGIKGDKVGADHGRGCKLAKVFESKDEAKTSTH--- 312

Query: 334 TGIAAVKTQNANPVALSHSMAFQESS 257
T I+++ NP AL+ S+ FQE S
Sbjct: 313 TAISSLPFMQGNPAALTRSVTFQEGS 338


>tr|Q14DX9|Q14DX9_PICAB Dof domain zinc finger DNA-binding protein
OS=Picea abies PE=2 SV=1
Length = 475

Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Frame = -3

Query: 478 VWVPKTLRIKDVDEAARSAIWSTLGIRD-TEGSLVSGKKEAAFQCH---AKETGIAAVKT 311
+WVPKTLRI D EAA+S+IW+TLG+ D E ++ SG AFQ AK++ A+
Sbjct: 399 LWVPKTLRIDDPGEAAKSSIWTTLGLGDKPESAITSGGIFKAFQPKTQGAKDSRKASQAL 458

Query: 310 QNANPVALSHSMAFQESS 257
Q ANP A S S++F ESS
Sbjct: 459 Q-ANPAAFSRSISFHESS 475


>tr|A7PDL2|A7PDL2_VITVI Chromosome chr17 scaffold_12, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016324001
PE=4 SV=1
Length = 367

Score = 61.6 bits (148), Expect = 2e-08
Identities = 41/84 (48%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = -3

Query: 499 SEPCEVRVWVPKTLRIKDVDEAARSAIWSTLGIR-DTEGSLVSGKKEAAFQCHA--KETG 329
SE C +WVPKTLRI D EAA+S+IW+TLGI+ D S+ G AF K
Sbjct: 287 SERC---LWVPKTLRIDDPAEAAKSSIWTTLGIKNDKVDSVSGGGLFNAFHLKGDDKNHA 343

Query: 328 IAAVKTQNANPVALSHSMAFQESS 257
I ANP ALS S+ FQESS
Sbjct: 344 IDTSAVLRANPAALSRSLNFQESS 367


>tr|B6SY12|B6SY12_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 556

Score = 60.8 bits (146), Expect = 3e-08
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = -3

Query: 496 EPCEVRVWVPKTLRIKDVDEAARSAIWSTLGIRDTE-GSLVSGKKEAAFQCHAKETGIAA 320
E E +WVPKTLRI D D+AA+S+IW+TLGI+ + G+ + K + +K A
Sbjct: 479 EKREKSLWVPKTLRIDDPDDAAKSSIWATLGIKPGDPGTFI---KPFQSKVESKGQRSDA 535

Query: 319 VKTQNANPVALSHSMAFQESS 257
+ ANP ALS +FQESS
Sbjct: 536 AQVLQANPAALSRLQSFQESS 556