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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913775
Clone id YMU001_000035_B05
Library
Length 311
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCCGGACATAGCATGCATTCTGTAAACAGGAAATTGAAGCACAGGAACAAGCCGTGGAA
ACACATCATCAGAAGCCCCCCAATTGATGGTATTATCTTCAGGTATGAGAATCTTTAATG
CCTCTTTGTGTGGTATGCATGGTATGTCAACTAATTTGTTGTGTAAAATGTTCTGAAGAG
TTCTGCCAGCCACATCTCTCACACGATTAATTTTTTCCAGAGCCTGTTTGATCAGGCCAC
CAACAAGCCTGACTGTAAGAGCATGATCGAACCAAGTCAAATCATCCTCGCCTTTCTGTC
GCATTGACTCC
■■Homology search results ■■ -
sp_hit_id Q8BYA0
Definition sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus
Align length 85
Score (bit) 60.8
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913775|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B05.
         (311 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculu...    61   2e-09
sp|Q5ZI87|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gall...    61   2e-09
sp|Q9BTW9|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapien...    58   1e-08
sp|Q28205|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus ...    57   3e-08
sp|Q55G93|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyosteli...    42   0.001
sp|A1A5B4|ANO9_HUMAN Anoctamin-9 OS=Homo sapiens GN=ANO9 PE=2 SV=2     32   0.75 
sp|A5VMP9|SYN_LACRD Asparaginyl-tRNA synthetase OS=Lactobacillus...    29   6.4  

>sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus
            GN=Tbcd PE=2 SV=1
          Length = 1196

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = -2

Query: 250  RLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN--TINWG 77
            R++  + +QA EKI+R R  A R    +LH     IP +PH++ L+ L P  +  T+NW 
Sbjct: 904  RVMCCVAQQASEKIDRFRAHAARVFLTLLHFDSPPIPHVPHRQELESLFPRSDVATVNWN 963

Query: 76   ASDDVFPRLVPVLQFPVYRMHAMSG 2
            A    FP +  +L  P YR H + G
Sbjct: 964  APSQAFPLITQLLGLPTYRYHVLLG 988


>sp|Q5ZI87|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gallus
            GN=TBCD PE=2 SV=1
          Length = 1019

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -2

Query: 235  LIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIP--EDNTINWGASDDV 62
            L +Q+ EKI++ R  AG     +LH     +P IPH+E L+ + P  E  T+NW A+ + 
Sbjct: 910  LAQQSAEKIDKFRAHAGSVFLTLLHFDSPPVPHIPHREELERIFPRSEAETLNWNAASEA 969

Query: 61   FPRLVPVLQFPVYRMHAMSG 2
            FPR+  +L  P Y+ + + G
Sbjct: 970  FPRITQLLALPAYQYYVLLG 989


>sp|Q9BTW9|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens
            GN=TBCD PE=1 SV=1
          Length = 1192

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -2

Query: 250  RLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN--TINWG 77
            R++  + +QA EKI+R R  A      +LH     IP +PH+  L+ L P  +  ++NW 
Sbjct: 901  RIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPIPHVPHRGELEKLFPRSDVASVNWS 960

Query: 76   ASDDVFPRLVPVLQFPVYRMHAMSG 2
            A    FPR+  +L  P YR H + G
Sbjct: 961  APSQAFPRITQLLGLPTYRYHVLLG 985


>sp|Q28205|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus
            GN=TBCD PE=2 SV=1
          Length = 1199

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = -2

Query: 259  LTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN--TI 86
            L  +L+  L +QA EKI+R R  A R    +LH     IP +P +  L+ L P     ++
Sbjct: 906  LCQQLMCCLAQQASEKIDRFRAHAARVFLALLHADSPAIPHVPARPELERLFPRAAVASV 965

Query: 85   NWGASDDVFPRLVPVLQFPVYRMHAMSG 2
            NWGA    FPR+  +L  P YR H + G
Sbjct: 966  NWGAPSQAFPRMARLLGLPAYRYHVLLG 993


>sp|Q55G93|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyostelium
            discoideum GN=tbcd PE=3 SV=2
          Length = 1480

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = -2

Query: 217  EKINRVRDVAGRTLQNILH-NKLVDIPCIPHKEALKILIPEDNTI--NWGASDDVFPRLV 47
            EK++++RDVA + +  +L       I  IPHKE LK +I +D  +  NW  +++  P + 
Sbjct: 1122 EKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLIC 1181

Query: 46   PVLQFPVY 23
             VL+F  Y
Sbjct: 1182 KVLKFNCY 1189


>sp|A1A5B4|ANO9_HUMAN Anoctamin-9 OS=Homo sapiens GN=ANO9 PE=2 SV=2
          Length = 782

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 14  MHSVNRKLKHRNKPWKHIIRSPPIDGIIFRY-ENL*CLFVWYAWY 145
           +H    +LK     W+H+ R  P+D I   + E +   FVW  WY
Sbjct: 153 LHKGEGRLKKTWARWRHMFREQPVDEIRNYFGEKVALYFVWLGWY 197


>sp|A5VMP9|SYN_LACRD Asparaginyl-tRNA synthetase OS=Lactobacillus
           reuteri (strain DSM 20016) GN=asnS PE=3 SV=1
          Length = 432

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
 Frame = -2

Query: 289 EDDLTWF--DHALTVR--LVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKE 122
           E ++ W   D +L ++   +  L++  ++   R  ++ GR+++++     +  P I +KE
Sbjct: 225 EPEMAWMHQDESLKIQEQYIAYLVQDLIDHCARELEMVGRSVESLKPFTELPYPRITYKE 284

Query: 121 ALKILIPEDNTINWGAS---------DDVFPRLVPVLQFP 29
           A++IL      + +GA           D F + V +L +P
Sbjct: 285 AIEILQKGGFDVEYGADFGSPEETYLADQFQKPVFILNYP 324
tr_hit_id A7PYD1
Definition tr|A7PYD1|A7PYD1_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera
Align length 82
Score (bit) 82.4
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913775|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B05.
         (311 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PYD1|A7PYD1_VITVI Chromosome chr15 scaffold_37, whole genom...    82   1e-14
tr|Q9LZY9|Q9LZY9_ARATH Beta-tubulin cofactor-like protein OS=Ara...    80   7e-14
tr|Q8L5R3|Q8L5R3_ARATH Tubulin folding cofactor D OS=Arabidopsis...    80   7e-14
tr|B4FXI7|B4FXI7_MAIZE Putative uncharacterized protein OS=Zea m...    76   7e-13
tr|Q8LN73|Q8LN73_ORYSJ Putative tubulin-folding cofactor (Putati...    74   4e-12
tr|Q337D2|Q337D2_ORYSJ Tubulin folding cofactor D, putative, exp...    74   4e-12
tr|Q0IWH8|Q0IWH8_ORYSJ Os10g0508500 protein OS=Oryza sativa subs...    74   4e-12
tr|B8BHT3|B8BHT3_ORYSI Putative uncharacterized protein OS=Oryza...    67   3e-10
tr|B3RN09|B3RN09_TRIAD Putative uncharacterized protein (Fragmen...    65   1e-09
tr|Q8CHC0|Q8CHC0_MOUSE MKIAA0988 protein (Fragment) OS=Mus muscu...    61   3e-08
tr|A2AAV4|A2AAV4_MOUSE Tubulin-specific chaperone d OS=Mus muscu...    61   3e-08
tr|B5X4U0|B5X4U0_SALSA Tubulin-specific chaperone D OS=Salmo sal...    59   9e-08
tr|B6N8R4|B6N8R4_BRAFL Putative uncharacterized protein OS=Branc...    59   9e-08
tr|B6MXL1|B6MXL1_BRAFL Putative uncharacterized protein OS=Branc...    59   9e-08
tr|Q0V9L2|Q0V9L2_XENTR Tubulin folding cofactor D OS=Xenopus tro...    58   2e-07
tr|A7MB50|A7MB50_BOVIN TBCD protein OS=Bos taurus GN=TBCD PE=2 SV=1    57   5e-07
tr|Q5DDZ5|Q5DDZ5_SCHJA Putative uncharacterized protein OS=Schis...    54   5e-06
tr|Q17AG8|Q17AG8_AEDAE Beta-tubulin cofactor d OS=Aedes aegypti ...    53   7e-06
tr|A7SMP4|A7SMP4_NEMVE Predicted protein (Fragment) OS=Nematoste...    53   9e-06
tr|Q16PD5|Q16PD5_AEDAE Beta-tubulin cofactor d OS=Aedes aegypti ...    52   2e-05
tr|B0X688|B0X688_CULQU Tubulin-specific chaperone D OS=Culex qui...    51   3e-05
tr|Q4SE34|Q4SE34_TETNG Chromosome 3 SCAF14626, whole genome shot...    51   3e-05
tr|B4MVU1|B4MVU1_DROWI GK15140 OS=Drosophila willistoni GN=GK151...    51   3e-05
tr|B4KGC0|B4KGC0_DROMO GI15724 OS=Drosophila mojavensis GN=GI157...    51   3e-05
tr|B4JAR1|B4JAR1_DROGR GH10275 OS=Drosophila grimshawi GN=GH1027...    50   4e-05
tr|B4LTU3|B4LTU3_DROVI GJ10199 OS=Drosophila virilis GN=GJ10199 ...    50   6e-05
tr|B5Y3W4|B5Y3W4_PHATR Predicted protein OS=Phaeodactylum tricor...    47   4e-04
tr|B3N9G0|B3N9G0_DROER GG24831 OS=Drosophila erecta GN=GG24831 P...    47   4e-04
tr|B4NW50|B4NW50_DROYA GE17943 OS=Drosophila yakuba GN=GE17943 P...    47   5e-04
tr|Q29MI4|Q29MI4_DROPS GA20218 OS=Drosophila pseudoobscura pseud...    46   8e-04

>tr|A7PYD1|A7PYD1_VITVI Chromosome chr15 scaffold_37, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00026393001
            PE=4 SV=1
          Length = 1233

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 36/82 (43%), Positives = 56/82 (68%)
 Frame = -2

Query: 247  LVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDNTINWGASD 68
            LVGG++KQA+EK++++R+ A + LQ ILHNK+  IP IP++E L+ ++P +  + WG   
Sbjct: 915  LVGGIVKQAVEKMDKLREAAAKALQRILHNKMFFIPFIPYREKLEEIVPNEVDLKWGVPT 974

Query: 67   DVFPRLVPVLQFPVYRMHAMSG 2
              +PR V +LQF  Y    +SG
Sbjct: 975  FSYPRFVQLLQFSCYSRSVLSG 996


>tr|Q9LZY9|Q9LZY9_ARATH Beta-tubulin cofactor-like protein
            OS=Arabidopsis thaliana GN=T4C21_150 PE=4 SV=1
          Length = 1249

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 35/96 (36%), Positives = 59/96 (61%)
 Frame = -2

Query: 289  EDDLTWFDHALTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKI 110
            +D  + FD  L  RL+GG++KQ +EK++++R+ A + LQ IL++K V +P +P++E L+ 
Sbjct: 921  DDTSSLFDSNLATRLIGGMLKQGVEKMDKLRETAAKVLQRILYHKSVSVPHVPYREKLEE 980

Query: 109  LIPEDNTINWGASDDVFPRLVPVLQFPVYRMHAMSG 2
            ++P    + W      FPR V +L+   Y    MSG
Sbjct: 981  ILPNKANLQWAVPAFSFPRFVQLLKLRCYSKEVMSG 1016


>tr|Q8L5R3|Q8L5R3_ARATH Tubulin folding cofactor D OS=Arabidopsis
            thaliana PE=2 SV=1
          Length = 1254

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 35/96 (36%), Positives = 59/96 (61%)
 Frame = -2

Query: 289  EDDLTWFDHALTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKI 110
            +D  + FD  L  RL+GG++KQ +EK++++R+ A + LQ IL++K V +P +P++E L+ 
Sbjct: 921  DDTSSLFDSNLATRLIGGMLKQGVEKMDKLRETAAKVLQRILYHKSVSVPHVPYREKLEE 980

Query: 109  LIPEDNTINWGASDDVFPRLVPVLQFPVYRMHAMSG 2
            ++P    + W      FPR V +L+   Y    MSG
Sbjct: 981  ILPNKANLQWAVPAFSFPRFVQLLKLRCYSKEVMSG 1016


>tr|B4FXI7|B4FXI7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 459

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 37/90 (41%), Positives = 56/90 (62%)
 Frame = -2

Query: 271 FDHALTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN 92
           FD  +   LV G+ KQA+EKI+++R++A +TLQ IL+++   IP IPH+E L+ +IP   
Sbjct: 137 FDSGIAQDLVAGIAKQAVEKIDKIREIAIKTLQRILYHQEHLIPFIPHRELLEEIIPNSR 196

Query: 91  TINWGASDDVFPRLVPVLQFPVYRMHAMSG 2
            + W      +PRLV +LQ   Y    +SG
Sbjct: 197 DLEWAVPTVSYPRLVKLLQVSYYSKSVLSG 226


>tr|Q8LN73|Q8LN73_ORYSJ Putative tubulin-folding cofactor (Putative
            uncharacterized protein) OS=Oryza sativa subsp. japonica
            GN=OSJNBb0091N21.28 PE=4 SV=1
          Length = 1109

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/90 (37%), Positives = 57/90 (63%)
 Frame = -2

Query: 271  FDHALTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN 92
            FD ++   LV G+ KQA+EKI+++R++A +TL+ IL+N+ + +P IP++E L+ +IP   
Sbjct: 783  FDSSIAQDLVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPNSA 842

Query: 91   TINWGASDDVFPRLVPVLQFPVYRMHAMSG 2
             + W      +PR V +LQ   Y    +SG
Sbjct: 843  DLEWAVPAVSYPRFVKLLQVSCYSKPVLSG 872


>tr|Q337D2|Q337D2_ORYSJ Tubulin folding cofactor D, putative,
            expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g36490 PE=4 SV=1
          Length = 1139

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/90 (37%), Positives = 57/90 (63%)
 Frame = -2

Query: 271  FDHALTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN 92
            FD ++   LV G+ KQA+EKI+++R++A +TL+ IL+N+ + +P IP++E L+ +IP   
Sbjct: 813  FDSSIAQDLVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPNSA 872

Query: 91   TINWGASDDVFPRLVPVLQFPVYRMHAMSG 2
             + W      +PR V +LQ   Y    +SG
Sbjct: 873  DLEWAVPAVSYPRFVKLLQVSCYSKPVLSG 902


>tr|Q0IWH8|Q0IWH8_ORYSJ Os10g0508500 protein OS=Oryza sativa subsp.
            japonica GN=Os10g0508500 PE=4 SV=1
          Length = 1244

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/90 (37%), Positives = 57/90 (63%)
 Frame = -2

Query: 271  FDHALTVRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN 92
            FD ++   LV G+ KQA+EKI+++R++A +TL+ IL+N+ + +P IP++E L+ +IP   
Sbjct: 918  FDSSIAQDLVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPNSA 977

Query: 91   TINWGASDDVFPRLVPVLQFPVYRMHAMSG 2
             + W      +PR V +LQ   Y    +SG
Sbjct: 978  DLEWAVPAVSYPRFVKLLQVSCYSKPVLSG 1007


>tr|B8BHT3|B8BHT3_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_34266 PE=4 SV=1
          Length = 1166

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 32/84 (38%), Positives = 53/84 (63%)
 Frame = -2

Query: 253  VRLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDNTINWGA 74
            V  V G+ KQA+EKI+++R++A +TL+ IL+N+ + +P IP++E L+ +IP    + W  
Sbjct: 846  VMWVLGIAKQAVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPNSADLEWAV 905

Query: 73   SDDVFPRLVPVLQFPVYRMHAMSG 2
                +PR V +LQ   Y    +SG
Sbjct: 906  PAVSYPRFVKLLQVSCYSKPVLSG 929


>tr|B3RN09|B3RN09_TRIAD Putative uncharacterized protein (Fragment)
            OS=Trichoplax adhaerens GN=TRIADDRAFT_21306 PE=4 SV=1
          Length = 938

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = -2

Query: 250  RLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDNT--INWG 77
            ++   L++QA EKI+R RD+AGRT+ N+L+++   IP IPH E LK + PE +   +NW 
Sbjct: 838  KIFNNLLQQASEKIDRTRDIAGRTMLNLLYHE-PTIPHIPHFEELKEIFPETDIRFLNWT 896

Query: 76   ASDDVFPRLVPVLQFPVYRMHAMSG 2
            ++   F R V  L    Y+ HA+ G
Sbjct: 897  SASLAFSRTVRTLSLMSYKYHALLG 921


>tr|Q8CHC0|Q8CHC0_MOUSE MKIAA0988 protein (Fragment) OS=Mus musculus
           GN=Tbcd PE=2 SV=1
          Length = 352

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = -2

Query: 250 RLVGGLIKQALEKINRVRDVAGRTLQNILHNKLVDIPCIPHKEALKILIPEDN--TINWG 77
           R++  + +QA EKI+R R  A R    +LH     IP +PH++ L+ L P  +  T+NW 
Sbjct: 60  RVMCCVAQQASEKIDRFRAHAARVFLTLLHFDSPPIPHVPHRQELESLFPRSDVATVNWN 119

Query: 76  ASDDVFPRLVPVLQFPVYRMHAMSG 2
           A    FP +  +L  P YR H + G
Sbjct: 120 APSQAFPLITQLLGLPTYRYHVLLG 144