BP913672
Clone id YMU001_000033_A03
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CACTTTCCTTTTCTTTGGTTCAGGTGCAGCAGCTGATGCTCCATTAGTTGTGGTCCGAGC
TGGACCACTTGTTTGGTTGTCTGCATCTAACTTTTTCTTTCCATTAGTAACCGTTCGAGC
TGGCTCACTTGCTTGATTGTCTGCATCTAACTTTTTCTTTCCATTTTTCTTCTCTTTGTC
TCTAACAGTGCAAATTGTATCCTCTTTCTCCTCCTTCAGATGTGCTTCAGATGCATGTGA
CCTCTTTCCATTCTTGTCAGGTAAAACTGAGGTTTCCTTTTTCTCTTTAGGCACCTCTGG
AGAAGACAAGCTAACGAAAGTCTCATCTGCATTGTCTTCATCTGAAATGTCATCATCAAC
AACCATTCGCCTAGTTCGTTTGCCTTTACTCTTCAGGTCGCCTCTCCGTAGGCGTGCAAA
ATTTGCAGCATCCTCATCGTCGCTACTTTCATTGATACAGGGATCATGCACCACTTCTGG
AATCTCCA
■■Homology search results ■■ -
sp_hit_id Q8TBK6
Definition sp|Q8TBK6|ZCH10_HUMAN Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens
Align length 96
Score (bit) 32.0
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913672|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_A03.
(488 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8TBK6|ZCH10_HUMAN Zinc finger CCHC domain-containing protein... 32 1.5
sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog OS=C... 32 1.5
sp|P25185|BRAZ_PSEAE Branched-chain amino acid transport system ... 32 2.0
sp|A6NJU9|YP038_HUMAN NPIP-like protein ENSP00000342480 OS=Homo ... 30 4.5
sp|O14148|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosacch... 30 4.5
sp|P25992|YEMA_DROME Yemanuclein-alpha OS=Drosophila melanogaste... 30 7.6
sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoid... 30 7.6
sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating p... 30 7.6

>sp|Q8TBK6|ZCH10_HUMAN Zinc finger CCHC domain-containing protein 10
OS=Homo sapiens GN=ZCCHC10 PE=2 SV=1
Length = 192

Score = 32.0 bits (71), Expect = 1.5
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = -3

Query: 288 KEKKETSVLPDKNGKR-SHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQASEPART 112
K+K+ SV + S AS++ + E+ T + D + + +S + T
Sbjct: 101 KKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDE-----SSSSSSSSASST 155

Query: 111 VTNGKKKLDADNQTSGPARTTTNGASAAAPEPKKRK 4
++ D+D+ +S + T+T+ +S P KK+K
Sbjct: 156 TSSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKKKK 191


>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog
OS=Caenorhabditis elegans GN=xnp-1 PE=1 SV=1
Length = 1359

Score = 32.0 bits (71), Expect = 1.5
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 11/159 (6%)
Frame = -3

Query: 447 SSDDEDAANFARLRRGDLKSKGKRTRRMVVXXXXXXXXXXDETFVSLSSPEVP-KEKKET 271
SS+DED+ R K K K+T++ + S + E K++ ET
Sbjct: 126 SSEDEDSDEE---REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAET 182

Query: 270 SVLPDKNGKRSHASEAHLKE----------EKEDTICTVRDXXXXXXXXKLDADNQASEP 121
S D++ K S S+ LK+ E E + + + +++++A E
Sbjct: 183 SEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDEAPEK 242

Query: 120 ARTVTNGKKKLDADNQTSGPARTTTNGASAAAPEPKKRK 4
+T + K ++ + ++P+PKK+K
Sbjct: 243 KKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKK 281


>sp|P25185|BRAZ_PSEAE Branched-chain amino acid transport system 3
carrier protein OS=Pseudomonas aeruginosa GN=braZ PE=3
SV=1
Length = 437

Score = 31.6 bits (70), Expect = 2.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +2

Query: 8 LFFGSGAAADAPLVVVRAGPLVWLSASNFF-----FPLVTVRA 121
LF G+G P+V +++GP VWL+A F P++TV A
Sbjct: 19 LFVGAGNIIFPPIVGLQSGPHVWLAALGFLITAVGLPVITVIA 61


>sp|A6NJU9|YP038_HUMAN NPIP-like protein ENSP00000342480 OS=Homo
sapiens PE=3 SV=3
Length = 1132

Score = 30.4 bits (67), Expect = 4.5
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 2/140 (1%)
Frame = -3

Query: 414 RLRRGDLKSKGKRTRRMVVXXXXXXXXXXDETFVSLSSPEVPKEKKETSVLPDKNGKRSH 235
R R GD++ K RR V SSP+ PK ++ V P + KR
Sbjct: 983 RRRVGDVEPSRKPKRRRAAD-------------VEPSSPK-PKRRRVGDVEPSRKPKRRR 1028

Query: 234 AS--EAHLKEEKEDTICTVRDXXXXXXXXKLDADNQASEPARTVTNGKKKLDADNQTSGP 61
A+ E E K + V D + + +P R +++ + P
Sbjct: 1029 AADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKR------RRVGDVEPSRKP 1082

Query: 60 ARTTTNGASAAAPEPKKRKV 1
R ++PEPK+R+V
Sbjct: 1083 KRRRAADVEPSSPEPKRRRV 1102


>sp|O14148|INO80_SCHPO Putative DNA helicase ino80
OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4
Length = 1604

Score = 30.4 bits (67), Expect = 4.5
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Frame = -3

Query: 306 SSPEVPKEKKETSVLPDKNGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQAS 127
SSPE P K S K K S + K +T T + + +A++ +
Sbjct: 522 SSPETPLTKASKS----KKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTA 577

Query: 126 EPARTVTNGKKKLDAD-----NQTSGPART--TTNGASAAAPEPKKRKV 1
E GK+KL D N T+ A T T A+A+AP KK+ V
Sbjct: 578 E-------GKEKLSGDSTETGNSTNKEASTEDTKANATASAPNKKKKTV 619


>sp|P25992|YEMA_DROME Yemanuclein-alpha OS=Drosophila melanogaster
GN=yemalpha PE=1 SV=1
Length = 1002

Score = 29.6 bits (65), Expect = 7.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3

Query: 141 DNQASEPARTVTNGKKKLDADNQTSG---PARTTTNGASAAAPEP 16
DN ++ A+ + GK K + + TSG P + T +S+ +P P
Sbjct: 274 DNHQAKRAKVIVTGKSKPSSSSLTSGKKPPTKPITTSSSSNSPRP 318


>sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoideum
GN=mybU PE=4 SV=1
Length = 2381

Score = 29.6 bits (65), Expect = 7.6
Identities = 19/96 (19%), Positives = 33/96 (34%)
Frame = -3

Query: 303 SPEVPKEKKETSVLPDKNGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQASE 124
S +P + LP N ++ + T + + N +S+
Sbjct: 1677 SKTLPPSNSPSKTLPLSNSPSKTLLPSNSSIPNKSTPSPIPKPTTSSTTYPVTTSNPSSK 1736

Query: 123 PARTVTNGKKKLDADNQTSGPARTTTNGASAAAPEP 16
P + K N T+ PA TT+N + P+P
Sbjct: 1737 PQTPIPTSNKSPAKSNTTTTPATTTSNTSITPTPKP 1772


>sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating
protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1
Length = 827

Score = 29.6 bits (65), Expect = 7.6
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = -3

Query: 312 SLSSPEVPKEKKETSVLPDKNGKRSHASEAHLKEEKE-DTICTVRDXXXXXXXXKLDADN 136
SL S +VP+++ S P +G ASE+ E E D T + +
Sbjct: 431 SLLSSQVPEQRLPGS--PMGSGHHRSASESSSYESSEYDHPTTEEFVCERSFLGYNERPS 488

Query: 135 QASEPARTVTNGKKKLDADNQTSGPARTTTNGASAAAPEP 16
++ +P R++ G+K +DA + G + A APEP
Sbjct: 489 RSFQPQRSIRKGEKPIDALRKVCGNDKC----ADCGAPEP 524


tr_hit_id B4LBU3
Definition tr|B4LBU3|B4LBU3_DROVI GJ12538 OS=Drosophila virilis
Align length 104
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913672|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_A03.
(488 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4LBU3|B4LBU3_DROVI GJ12538 OS=Drosophila virilis GN=GJ12538 ... 35 1.4
tr|A2R6X1|A2R6X1_ASPNC Contig An16c0060, complete genome OS=Aspe... 35 2.5
tr|B3ENF9|B3ENF9_CHLPB Putative uncharacterized protein OS=Chlor... 33 7.2
tr|B8HA23|B8HA23_9MICC Ribonuclease, Rne/Rng family OS=Arthrobac... 33 7.2
tr|Q2TBL3|Q2TBL3_BOVIN Zinc finger, CCHC domain containing 10 OS... 33 7.2
tr|A7E3S6|A7E3S6_BOVIN Zinc finger, CCHC domain containing 10 (F... 33 7.2
tr|A7PY21|A7PY21_VITVI Chromosome chr15 scaffold_37, whole genom... 33 9.3

>tr|B4LBU3|B4LBU3_DROVI GJ12538 OS=Drosophila virilis GN=GJ12538
PE=4 SV=1
Length = 1083

Score = 35.4 bits (80), Expect = 1.4
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = -3

Query: 312 SLSSPEVPKEKKETSVLPDKNGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQ 133
S +SPE K+KK+ S K K K D+I + +D DA+ Q
Sbjct: 238 SSASPERRKDKKKKSKKHKKESKSKKKKSRKRKYSGSDSIDSDKDSEDESDSS--DAERQ 295

Query: 132 ASEPARTVTNGKKKLDADNQTSGPAR-TTTNGASAAAPEPKKRK 4
+ KKK D + + AR ++T+ A + +P PK +K
Sbjct: 296 LKSARKKAKKEKKKRDKKLKKNQRARASSTDSARSNSPAPKDKK 339


>tr|A2R6X1|A2R6X1_ASPNC Contig An16c0060, complete genome
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=An16g01500 PE=4 SV=1
Length = 762

Score = 34.7 bits (78), Expect = 2.5
Identities = 31/136 (22%), Positives = 46/136 (33%)
Frame = -3

Query: 441 DDEDAANFARLRRGDLKSKGKRTRRMVVXXXXXXXXXXDETFVSLSSPEVPKEKKETSVL 262
D+EDAA AR R L+ KG + + L+ P K K E+S
Sbjct: 643 DEEDAARIARAERNRLRRKGLNPKAI------------------LNKPAKSKSKDESSAP 684

Query: 261 PDKNGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQASEPARTVTNGKKKLDA 82
+K ++ E K E + + +EP+ T +K A
Sbjct: 685 TEKTEEKEKKKEESPKRETPAKKESKESPKPKADSKPTKTKTETAEPSTTKKQQQKPTTA 744

Query: 81 DNQTSGPARTTTNGAS 34
T +TT AS
Sbjct: 745 QEPTEKKKKTTAKKAS 760


>tr|B3ENF9|B3ENF9_CHLPB Putative uncharacterized protein
OS=Chlorobium phaeobacteroides (strain BS1)
GN=Cphamn1_0735 PE=4 SV=1
Length = 1122

Score = 33.1 bits (74), Expect = 7.2
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Frame = -1

Query: 392 RVKANELGEWLLMMTFQMKTMQMRLSLACLLQRCLKRKRKPQFYLTRMERGHMHLKHIXX 213
R K +ELGE + +MK MQ Q LK + L+R++ + +
Sbjct: 638 RQKRDELGE----LNHRMKVMQQE-------QSTLKERIT---ILSRLDE-YPDFHDLDW 682

Query: 212 XXXRIQFALLETKRRKMERKS*-MQTI--------KQVSQLERLLMERKS*MQTTKQVVQ 60
+ A LE ++R++E S ++T+ K + + ERLL ERK TK+ +
Sbjct: 683 QPVAVAIARLEAEKRELESTSDKLRTLTMQLDEVEKGLEKTERLLDERKDKRSRTKEKIS 742

Query: 59 LGPQLMEHQLLHLNQ 15
+L E LL +N+
Sbjct: 743 SARELEEQALLFVNE 757


>tr|B8HA23|B8HA23_9MICC Ribonuclease, Rne/Rng family OS=Arthrobacter
chlorophenolicus A6 GN=Achl_2147 PE=4 SV=1
Length = 1151

Score = 33.1 bits (74), Expect = 7.2
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Frame = -3

Query: 297 EVPKEKKETSVLPDKNGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQ----- 133
EVP E+ ET + + A+ A E + + T LDA+ +
Sbjct: 123 EVPAEQAETKPVRRRRVATRKAAPAGDPAETQASAETPAAAQEPPAAVALDAETEDRGAV 182

Query: 132 ---ASEPARTVTNGKKKLDADNQTSGPARTTTNGASAAAPE 19
A+ A T +++ DAD T+GPA+ T AAA E
Sbjct: 183 ARKAAVQAAVTTAAEQEPDADEATAGPAQATGTAVPAAAGE 223


>tr|Q2TBL3|Q2TBL3_BOVIN Zinc finger, CCHC domain containing 10
OS=Bos taurus GN=ZCCHC10 PE=2 SV=1
Length = 170

Score = 33.1 bits (74), Expect = 7.2
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -3

Query: 288 KEKKETSVLPDK-NGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQASEPART 112
K+K+ SV N S AS++ + E+ T + D D + +S + +
Sbjct: 79 KKKRSKSVTSSSSNSSDSSASDSSSESEETSTSSSSEDSDS-------DESSSSSSSSAS 131

Query: 111 VTNGKKKLDADNQTSGPARTTTNGASAAAPEPKKRK 4
T+ D+D+ +S + ++T+ S++ EP K+K
Sbjct: 132 STSSSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKK 167


>tr|A7E3S6|A7E3S6_BOVIN Zinc finger, CCHC domain containing 10
(Fragment) OS=Bos taurus GN=ZCCHC10 PE=2 SV=1
Length = 168

Score = 33.1 bits (74), Expect = 7.2
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -3

Query: 288 KEKKETSVLPDK-NGKRSHASEAHLKEEKEDTICTVRDXXXXXXXXKLDADNQASEPART 112
K+K+ SV N S AS++ + E+ T + D D + +S + +
Sbjct: 77 KKKRSKSVTSSSSNSSDSSASDSSSESEETSTSSSSEDSDS-------DESSSSSSSSAS 129

Query: 111 VTNGKKKLDADNQTSGPARTTTNGASAAAPEPKKRK 4
T+ D+D+ +S + ++T+ S++ EP K+K
Sbjct: 130 STSSSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKK 165


>tr|A7PY21|A7PY21_VITVI Chromosome chr15 scaffold_37, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026269001
PE=4 SV=1
Length = 242

Score = 32.7 bits (73), Expect = 9.3
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -3

Query: 318 FVSLSSPEVPKEKKETSVLPDKNGKRSHASE--AHLKEE---KEDTICTVRDXXXXXXXX 154
F S S+P+ P+ + S+ +K GKR A E H K+E K I D
Sbjct: 45 FTSPSTPQRPQGSAKASIDKEKKGKRGDAEEKKLHPKDELNYKTTKIDAAGDGDHFMTSQ 104

Query: 153 KLDADNQASEPARTVTNGKKK 91
++ DN + P+ T GK+K
Sbjct: 105 DME-DNDGTVPSSTHEKGKRK 124