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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913604
Clone id YMU001_000032_B02
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGGACACCATTGTAGGCCTCCTCTACTGGCAAGGAGAGAAAATGGTAGTCCCTATCCTG
CACCTCTTCCTGATGTCCAGGAAAGGTTGAAGCAACTGAAATAGTGTTGTCACTTTCGAG
CACTTTCATTTCTACTGTTTCATCCATTCGATCAATGTCTCCAAAGGACAATCAGACAAA
TCTGGTGATAGGATATAAATCAACACCACAAATTAGTAGGAAGGTGAAAGATACATCAGT
ATAAGATGAAACTAATAAGAACAAGTCTAGCGATTTTCAATGCCCTAGTCACCAAATTTG
GATTCCATATATACCTATGAAGTGTTGCAAGGTGCTTACAATTCACAAGTATCAGTCAAG
CATCCAGTCACAAAACGTCCTCAAACCAAGGGCTCTAGCATTCATTGATGATGCATCCAC
ACCAAGCTAGGCT
■■Homology search results ■■ -
sp_hit_id P73334
Definition sp|P73334|RPOC2_SYNY3 DNA-directed RNA polymerase subunit beta' OS=Synechocystis sp. (strain PCC 6803)
Align length 30
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913604|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_B02.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P73334|RPOC2_SYNY3 DNA-directed RNA polymerase subunit beta' ...    30   4.9  
sp|P97265|GBA3_CAVPO Cytosolic beta-glucosidase OS=Cavia porcell...    30   4.9  
sp|Q8UGD7|KGUA_AGRT5 Guanylate kinase OS=Agrobacterium tumefacie...    29   8.4  
sp|Q5RF65|GBA3_PONAB Cytosolic beta-glucosidase OS=Pongo abelii ...    29   8.4  
sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens ...    29   8.4  

>sp|P73334|RPOC2_SYNY3 DNA-directed RNA polymerase subunit beta'
            OS=Synechocystis sp. (strain PCC 6803) GN=rpoC2 PE=1 SV=1
          Length = 1317

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 124  DETVEMKVLESDNTISVASTFPGHQEEVQD 35
            DE+V++KV+E D T+S     PG    V D
Sbjct: 1015 DESVDIKVVEDDGTVSEYPLLPGQNAMVTD 1044


>sp|P97265|GBA3_CAVPO Cytosolic beta-glucosidase OS=Cavia porcellus
           GN=Gba3 PE=1 SV=1
          Length = 469

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 237 KNKSSDFQCPSHQIWIPYIPMKCCKVLTIHKYQSSIQSQNVLKPRALAFID 389
           KN++ D  C S+ +W     +KC K L +  Y+ SI    +L      FI+
Sbjct: 45  KNQTGDVACGSYTLWEE--DLKCIKQLGLTHYRFSISWSRLLPDGTTGFIN 93


>sp|Q8UGD7|KGUA_AGRT5 Guanylate kinase OS=Agrobacterium tumefaciens
           (strain C58 / ATCC 33970) GN=gmk PE=3 SV=1
          Length = 220

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 118 TVEMKVLESDNTISVA---STFPGHQEEVQDRDYHFLS 14
           T+   +LE D  IS++   +T P  Q E++   YHF+S
Sbjct: 30  TIARNLLEKDKNISLSVSVTTRPRRQSEIEGIHYHFIS 67


>sp|Q5RF65|GBA3_PONAB Cytosolic beta-glucosidase OS=Pongo abelii
           GN=GBA3 PE=2 SV=1
          Length = 469

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 237 KNKSSDFQCPSHQIWIPYIPMKCCKVLTIHKYQSSIQSQNVLKPRALAFID 389
           KN++ D  C S+ +W     +KC K L +  Y+ S+    +L      FI+
Sbjct: 45  KNQTGDVACGSYTLWEE--DLKCIKQLGLTHYRFSLSWSRLLPDGTTGFIN 93


>sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens
           GN=GBA3 PE=1 SV=2
          Length = 469

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 237 KNKSSDFQCPSHQIWIPYIPMKCCKVLTIHKYQSSIQSQNVLKPRALAFID 389
           KN++ D  C S+ +W     +KC K L +  Y+ S+    +L      FI+
Sbjct: 45  KNQTGDVACGSYTLWEE--DLKCIKQLGLTHYRFSLSWSRLLPDGTTGFIN 93
tr_hit_id Q0E4W2
Definition tr|Q0E4W2|Q0E4W2_9POAL Cytidine deaminase OS=Paspalum simplex
Align length 38
Score (bit) 49.7
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913604|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_B02.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0E4W2|Q0E4W2_9POAL Cytidine deaminase OS=Paspalum simplex GN...    50   7e-05
tr|B4FPE0|B4FPE0_MAIZE Cytidine/deoxycytidylate deaminase family...    50   7e-05
tr|Q75LI1|Q75LI1_ORYSJ Os03g0833900 protein OS=Oryza sativa subs...    48   2e-04
tr|B8AMS3|B8AMS3_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|A7Q5W1|A7Q5W1_VITVI Chromosome chr14 scaffold_54, whole genom...    48   2e-04
tr|A3APF8|A3APF8_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.001
tr|B6T8Z7|B6T8Z7_MAIZE Cytidine/deoxycytidylate deaminase family...    45   0.002
tr|A1YLY6|A1YLY6_MAIZE Putative cytidine deaminase OS=Zea mays G...    45   0.002
tr|A1YLY4|A1YLY4_MAIZE Putative cytidine deaminase OS=Zea mays G...    45   0.002
tr|A1YLY2|A1YLY2_MAIZE Cytidine/deoxycytidylate deaminase family...    44   0.003
tr|Q3HVN6|Q3HVN6_SOLTU Putative uncharacterized protein OS=Solan...    44   0.004
tr|B7FGP3|B7FGP3_MEDTR Putative uncharacterized protein OS=Medic...    44   0.004
tr|Q0D7H8|Q0D7H8_ORYSJ Os07g0245100 protein (Fragment) OS=Oryza ...    44   0.005
tr|Q8W156|Q8W156_BRAOL Deoxycytidine deaminase OS=Brassica olera...    43   0.007
tr|B8B4R0|B8B4R0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|A3BI78|A3BI78_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q94BU8|Q94BU8_ARATH AT5g28050/F15F15_120 OS=Arabidopsis thali...    42   0.012
tr|A1YLY8|A1YLY8_MAIZE Putative cytidine deaminase OS=Zea mays G...    42   0.012
tr|O65755|O65755_CICAR Putative deoxycytidylate deaminase (Putat...    42   0.015
tr|A9PB35|A9PB35_POPTR Putative uncharacterized protein OS=Popul...    42   0.015
tr|A9P2F6|A9P2F6_PICSI Putative uncharacterized protein OS=Picea...    41   0.034
tr|Q8H6J1|Q8H6J1_MAIZE Putative cytidine deaminase OS=Zea mays G...    40   0.058
tr|Q2V339|Q2V339_ARATH Uncharacterized protein At5g28050.2 OS=Ar...    39   0.099
tr|B7FGY2|B7FGY2_MEDTR Putative uncharacterized protein OS=Medic...    37   0.64 
tr|Q114C6|Q114C6_TRIEI Peptidase-like OS=Trichodesmium erythraeu...    34   4.2  
tr|A8P1M2|A8P1M2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   9.3  

>tr|Q0E4W2|Q0E4W2_9POAL Cytidine deaminase OS=Paspalum simplex
           GN=cda PE=2 SV=1
          Length = 148

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/38 (71%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E KV+ES D TISVAS F GHQE VQDRD+ FLS  VE
Sbjct: 3   EAKVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVE 40


>tr|B4FPE0|B4FPE0_MAIZE Cytidine/deoxycytidylate deaminase family
           protein OS=Zea mays PE=2 SV=1
          Length = 186

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/38 (71%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E KV+ES D TISVAS F GHQE VQDRD+ FLS  VE
Sbjct: 3   EAKVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVE 40


>tr|Q75LI1|Q75LI1_ORYSJ Os03g0833900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0096I06.26 PE=2 SV=1
          Length = 186

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E +V+ES D TISVAS F GHQE VQDRD+ FLS  VE
Sbjct: 3   EAQVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVE 40


>tr|B8AMS3|B8AMS3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14201 PE=4 SV=1
          Length = 186

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E +V+ES D TISVAS F GHQE VQDRD+ FLS  VE
Sbjct: 3   EAQVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVE 40


>tr|A7Q5W1|A7Q5W1_VITVI Chromosome chr14 scaffold_54, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031118001
           PE=4 SV=1
          Length = 186

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/38 (65%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           + KV+E+ D TISVAS F GHQE VQDRDY FL+  VE
Sbjct: 3   DAKVVEAKDGTISVASAFAGHQEVVQDRDYKFLTAAVE 40


>tr|A3APF8|A3APF8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012680 PE=4 SV=1
          Length = 258

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 23/34 (67%), Positives = 24/34 (70%)
 Frame = -2

Query: 103 VLESDNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           V   D TISVAS F GHQE VQDRD+ FLS  VE
Sbjct: 79  VESKDGTISVASAFAGHQEAVQDRDHKFLSKAVE 112


>tr|B6T8Z7|B6T8Z7_MAIZE Cytidine/deoxycytidylate deaminase family
           protein OS=Zea mays PE=2 SV=1
          Length = 186

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E +V+ES D TISVAS F G+QE VQDRD+ FL+  VE
Sbjct: 3   EAQVVESKDGTISVASAFAGYQEAVQDRDHKFLTKAVE 40


>tr|A1YLY6|A1YLY6_MAIZE Putative cytidine deaminase OS=Zea mays
           GN=CDA1-En PE=2 SV=1
          Length = 186

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E +V+ES D TISVAS F  HQE VQDRD+ FL+  VE
Sbjct: 3   EAQVVESKDGTISVASAFAAHQEAVQDRDHKFLTKAVE 40


>tr|A1YLY4|A1YLY4_MAIZE Putative cytidine deaminase OS=Zea mays
           GN=CDA2-En PE=2 SV=1
          Length = 186

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E +V+ES D TISVAS F G+QE VQDRD+ FL+  VE
Sbjct: 3   EAQVVESKDGTISVASAFAGYQEAVQDRDHKFLTKAVE 40


>tr|A1YLY2|A1YLY2_MAIZE Cytidine/deoxycytidylate deaminase family
           protein OS=Zea mays GN=CDA1-En PE=2 SV=1
          Length = 186

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = -2

Query: 112 EMKVLES-DNTISVASTFPGHQEEVQDRDYHFLSLPVE 2
           E +V+ES D TISVAS F  HQE VQDRD+ FL+  VE
Sbjct: 3   EAQVVESKDGTISVASAFVAHQEAVQDRDHKFLTKAVE 40