BP913603
Clone id YMU001_000032_B01
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTTTGTACATTGGCTTCATTACTTTCTCAAATCTTTCCGTGTTGGCAACTTTTGCATGT
GTGCCTTTAACCATGATGGAGTAAGAGTCTCCTAGGTCCACAAAAGGAACTTCCTTGTTG
AGTTGGGCTTTAAGAACATCAGTCTCTAGTGTGTAGTCATCTTTCAATAAATCTACAATG
CCCTCCCTATCCAGCCTAGGGGCAGCCCTCCAATCCTGAGTTTCATACTCTCTGACCTTT
CCATGTCATTCACTATTGATATGACTTCATGCACAAAATGGTCTAAGTAAGCTTAAGTTC
ACCATTAACACTATCCCAGCCTAGGGGCAGCCCTCCAATTATGAGTTTCATTCTTAATGC
TCTCTGACTTTCCTTCTCATGCACTATTGATATGACTTCATGCACAAAATGGTCTAAGTT
AGCTAAGTTCACCTTTAACACTCGATTGTCACTTCTTGTTGAAATGTCTCTGACATGGGG
ATTTCTTGTGCTCTTTGCTGCTCTGTCGAGTACCTGCAGGTAATATCT
■■Homology search results ■■ -
sp_hit_id Q0I5W4
Definition sp|Q0I5W4|MNMG_HAES1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Haemophilus somnus (strain 129Pt)
Align length 61
Score (bit) 30.4
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913603|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_B01.
(528 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0I5W4|MNMG_HAES1 tRNA uridine 5-carboxymethylaminomethyl mod... 30 5.5
sp|Q8VDP4|K1967_MOUSE Protein KIAA1967 homolog OS=Mus musculus P... 26 6.6
sp|Q5P7H3|ARLY_AZOSE Argininosuccinate lyase OS=Azoarcus sp. (st... 30 9.2
sp|B0UWH3|MNMG_HAES2 tRNA uridine 5-carboxymethylaminomethyl mod... 30 9.4

>sp|Q0I5W4|MNMG_HAES1 tRNA uridine 5-carboxymethylaminomethyl
modification enzyme mnmG OS=Haemophilus somnus (strain
129Pt) GN=mnmG PE=3 SV=1
Length = 629

Score = 30.4 bits (67), Expect = 5.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = -1

Query: 504 RAAKSTRNPHVRDISTRSDN-------RVLKVNLANLDHFVHEVISIVHEKESQRALRMK 346
R S++ P VR ++D R+ N NLD F EV I+ EK+S + K
Sbjct: 82 RTLNSSKGPAVRATRAQADRVLYRQVVRIALENQPNLDIFQQEVTDIILEKDSVTGIETK 141

Query: 345 L 343
+
Sbjct: 142 M 142


>sp|Q8VDP4|K1967_MOUSE Protein KIAA1967 homolog OS=Mus musculus PE=1
SV=2
Length = 922

Score = 26.2 bits (56), Expect(2) = 6.6
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2

Query: 386 IDMTSCTKWSKLAKFTF 436
ID+++CTKW + A+F +
Sbjct: 394 IDLSTCTKWWRFAEFQY 410



Score = 22.7 bits (47), Expect(2) = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3

Query: 189 IQPRGSPPILSFILSDLSMSFT-IDMTSCTKW 281
+ P+ P +L + + T ID+++CTKW
Sbjct: 371 LDPQADPQVLVRTAIRCAQAQTGIDLSTCTKW 402


>sp|Q5P7H3|ARLY_AZOSE Argininosuccinate lyase OS=Azoarcus sp.
(strain EbN1) GN=argH PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 9.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2

Query: 197 RLDREGIVDLLKDDYTLETDVLKAQLNKEVPFVDLGDSYSIMVKGTHAK 51
R+ + + D LK Y TD+ + K +PF D ++ ++ V+ AK
Sbjct: 358 RVKADAMRDALKQGYATATDLADYLVKKGLPFRDAHEAVALAVRAAEAK 406


>sp|B0UWH3|MNMG_HAES2 tRNA uridine 5-carboxymethylaminomethyl
modification enzyme mnmG OS=Haemophilus somnus (strain
2336) GN=mnmG PE=3 SV=1
Length = 629

Score = 29.6 bits (65), Expect = 9.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = -1

Query: 504 RAAKSTRNPHVRDISTRSDN-------RVLKVNLANLDHFVHEVISIVHEKESQRALRMK 346
R S++ P VR ++D R+ N NLD F EV I+ EK+S + K
Sbjct: 82 RTLNSSKGPAVRATRAQADRVLYRQVVRIALENQPNLDIFQQEVTDIILEKDSIAGVETK 141

Query: 345 L 343
+
Sbjct: 142 M 142


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913603|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_B01.
(528 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******