BP913583
Clone id YMU001_000031_H03
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTCCACAAATATCCTTTATGTTCAATTGCATAGTCACACAAACAAG
TTGGTTACTCATTGATTAAACTTGCCCTGTTGTCAATGCACATACAGGGCATGTCCTCCG
TGTATTCACAGCAAAAAAAATTCCCATTGAGGGATGAAAATTCACTAGTTTTACATTTCT
CTTTGAGAAGACTCTAATACACGGTATGGTGGTACAACCACAGGGAGCAACTTCAACACC
ATCTTAGCCGAAAGGGTTAGACTACCTTACCTTGGAGCGGGTGCAATCTCTTTCCCTACC
TGCAGGATAACCCACAGAGATTCTGTTGCAAGAGCTGCCCATCAGAAATTTGCCTACACA
TGAGATTGCTACCACACTGACAACACCAAACAACGGGCTCAAGAACACCTTCCTTAAAGA
AGACCCCATACCCACATGCTCAGTTCTTTCACATTCCGAATCATCTGCCCCATCTTCATT
TCCTGTCTCTTCCTTCAACGAGTCCAAAAATACTTCGTCGCCATCCTTACTCTCAAATCT
CAAGTAGCTCCTCATTCA
■■Homology search results ■■ -
sp_hit_id Q6ARX9
Definition sp|Q6ARX9|QUEC_DESPS Queuosine biosynthesis protein queC OS=Desulfotalea psychrophila
Align length 49
Score (bit) 30.0
E-value 7.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913583|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H03.
(542 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6ARX9|QUEC_DESPS Queuosine biosynthesis protein queC OS=Desu... 30 7.6
sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS... 30 7.6
sp|Q8WTW3|COG1_HUMAN Conserved oligomeric Golgi complex subunit ... 30 9.9

>sp|Q6ARX9|QUEC_DESPS Queuosine biosynthesis protein queC
OS=Desulfotalea psychrophila GN=queC PE=3 SV=1
Length = 219

Score = 30.0 bits (66), Expect = 7.6
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3

Query: 216 FNTILAERVRLPYLGAGAISFPTCRITHRD--SVARAAHQKFAYT*DCY 356
FN AE V L G AI FP +T RD + R FA T CY
Sbjct: 138 FNNAFAEAVNLGTDGQVAIRFPFSEMTKRDIGDLGRTLDLDFAKTWTCY 186


>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog
OS=Homo sapiens GN=BMS1 PE=1 SV=1
Length = 1282

Score = 30.0 bits (66), Expect = 7.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1

Query: 518 ESKDGDEVFLDSLKEETGNEDGADDSECERTEHVGM 411
ES D D+ D + E+ G E+G+ D E E E+ M
Sbjct: 438 ESGDSDDEEDDEMSEDDGLENGSSDEEAEEEENAEM 473


>sp|Q8WTW3|COG1_HUMAN Conserved oligomeric Golgi complex subunit 1
OS=Homo sapiens GN=COG1 PE=1 SV=1
Length = 980

Score = 29.6 bits (65), Expect = 9.9
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +1

Query: 202 PQGATSTPS*PKGLDYLTLERVQSLSLPAG*PTEILLQELPI----RNLPTH--EIATTL 363
P+G P+ P GL + TLE + PAG T +L +E+ + ++LP E TL
Sbjct: 277 PEGLLPDPALPCGLLFSTLETITG-QHPAGKGTGVLQEEMKLCSWFKHLPASIVEFQPTL 335

Query: 364 TTPNNGLKNTFLKE 405
T + + +LK+
Sbjct: 336 RTLAHPISQEYLKD 349


tr_hit_id A0MV34
Definition tr|A0MV34|A0MV34_ACRMI Ventral nervous system defective 2 OS=Acropora millepora
Align length 81
Score (bit) 36.2
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913583|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H03.
(542 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0MV34|A0MV34_ACRMI Ventral nervous system defective 2 OS=Acr... 36 1.1
tr|Q22UD2|Q22UD2_TETTH Proprotein convertase like protein OS=Tet... 33 9.7

>tr|A0MV34|A0MV34_ACRMI Ventral nervous system defective 2
OS=Acropora millepora GN=vnd2 PE=2 SV=1
Length = 207

Score = 36.2 bits (82), Expect = 1.1
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +2

Query: 113 QQKKF---PLRDENSLVLHFSLRRL*YTVWWYNHREQLQHHLSRKG*TTLPWSGCNLFPY 283
QQ+++ P R+E + ++H + ++ +W+ NHR + + +S +G P+S + P
Sbjct: 106 QQQRYLSAPEREELARIVHLTPAQV--KIWFQNHRYKYRKQISERGPWDKPYSPLSQ-PA 162

Query: 284 LQDNPQRFCCKSCPSEICLHM 346
L P +FC SC S C ++
Sbjct: 163 LLSGPGQFC--SCVSPSCSYL 181


>tr|Q22UD2|Q22UD2_TETTH Proprotein convertase like protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00259540 PE=4
SV=2
Length = 744

Score = 33.1 bits (74), Expect = 9.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3

Query: 420 CGYGVFFKE---GVLEPVVWCCQCGSNLMCRQISDGQLLQQNLCGLSCR*G 277
C G +F E ++ + +C QC + C+Q DG +L+ LC C+ G
Sbjct: 40 CQSGNYFDEYQSKCVKCMDYCKQCHTKSQCKQCEDGYVLENGLCKSRCKTG 90