BP913572
Clone id YMU001_000031_G04
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TAACTCATTTGAGAGCATTTTTTGTAGCTTACCTACATCCTCCAATGAGTGCATACCTGA
TGATCCCTCTTGGTTTGCCGAGGTTGCTTCAGATTGTGTTAATCTTCCTGGGTCTTTAAG
AATGACTCCCATTACTTCGATGCTACTGTCACTCCCGTCAGTGGTGGTCGTGTCTTCTCT
TGAGGTAGACGAGTAGTCGCTGGTGGACTCGTCTTCTGAAGCCTCCAAGATCATGTTGCG
CTGCTTTCCAATCCTCATGTCGTAGAATAATGGACTTCCCTTTAGCATCCTTCATCTGGA
TCAGCCCAGTGCTCCAGTTTTGTTTAGCTTCCATAGCCATAAGCCAAGGCCTTCCAAGAA
TAATGGGGTAGCCATCTCCTTTGTGTGGCATGACGAAGATATCTACCTCCACTTCTGTAT
TGAATGCTTTTACTTTGACCGCATTTACAATGCCTACGC
■■Homology search results ■■ -
sp_hit_id P0C423
Definition sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Aeromonas salmonicida
Align length 50
Score (bit) 30.4
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913572|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G04.
(459 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader peptid... 30 3.8
sp|A2T195|LEP4_AERS4 Type 4 prepilin-like proteins leader peptid... 30 3.8
sp|Q05174|LAT_NOCLA L-lysine-epsilon aminotransferase OS=Nocardi... 30 3.8
sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associat... 30 5.0
sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C OS=Pectobacte... 30 6.6
sp|Q966W3|NDST_CAEEL Bifunctional heparan sulfate N-deacetylase/... 30 6.6

>sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader
peptide-processing enzyme OS=Aeromonas salmonicida
GN=tapD PE=3 SV=1
Length = 291

Score = 30.4 bits (67), Expect = 3.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3

Query: 216 LKPPRSCCAAFQSSCRRIMDFPLASFIWISPVLQFCLASIAISQGLPRIM 365
L PRSCC + + PL S++W+ + C A+I+ L ++
Sbjct: 68 LMVPRSCCPRCNHPITALENIPLLSWLWLKGRCRGCQAAISARYPLVELL 117


>sp|A2T195|LEP4_AERS4 Type 4 prepilin-like proteins leader
peptide-processing enzyme OS=Aeromonas salmonicida
(strain A449) GN=tapD PE=3 SV=1
Length = 291

Score = 30.4 bits (67), Expect = 3.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3

Query: 216 LKPPRSCCAAFQSSCRRIMDFPLASFIWISPVLQFCLASIAISQGLPRIM 365
L PRSCC + + PL S++W+ + C A+I+ L ++
Sbjct: 68 LMVPRSCCPRCNHPITALENIPLLSWLWLKGRCRGCQAAISARYPLVELL 117


>sp|Q05174|LAT_NOCLA L-lysine-epsilon aminotransferase OS=Nocardia
lactamdurans GN=lat PE=3 SV=1
Length = 450

Score = 30.4 bits (67), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2

Query: 14 SIFCSLPTSSN-ECIPDDPSWFAEVASDCVNLPGS 115
S F S P N CI DDP++ E+A+ VN P +
Sbjct: 60 SFFASAPLGINPSCIVDDPAFVGELAAAAVNKPSN 94


>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated
protein homolog (Fragment) OS=Bos taurus GN=ASPM PE=2
SV=1
Length = 3371

Score = 30.0 bits (66), Expect = 5.0
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3

Query: 325 KQNWSTGLIQMKDAKGKSIILRHEDWKAAQHDLGGFRRRVHQRLLVYLKRRH 170
K W+T +IQ + K L+H+ KAA GF+ V +RL+ +RRH
Sbjct: 2491 KLQWATKVIQERYRASKRKALQHDALKAATCARAGFQDMVVRRLIE--ERRH 2540


>sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C
OS=Pectobacterium carotovorum subsp. carotovorum GN=truC
PE=3 SV=1
Length = 376

Score = 29.6 bits (65), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3

Query: 156 RQWWSCLLLR*TSSRWWTRLLKPPRSCCAAFQS 254
R W+ CL+L+ RW R +P R CC + S
Sbjct: 71 RSWFYCLILK---KRWKGRQKRPRRFCCVSSSS 100


>sp|Q966W3|NDST_CAEEL Bifunctional heparan sulfate
N-deacetylase/N-sulfotransferase 1 OS=Caenorhabditis
elegans GN=hst-1 PE=2 SV=1
Length = 852

Score = 29.6 bits (65), Expect = 6.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -2

Query: 434 SKSIQYR--SGGRYLRHATQRRWLPHYSWKALAY 339
SK ++ R SGGRY+ H T +WL H+S + + +
Sbjct: 716 SKKVRQRCISGGRYVHHLT--KWLEHFSLQQMIF 747


tr_hit_id A9RN68
Definition tr|A9RN68|A9RN68_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 35.8
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913572|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G04.
(459 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RN68|A9RN68_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.1
tr|Q9XH31|Q9XH31_ARATH Putative athila transposon protein OS=Ara... 34 3.2
tr|A5BTS1|A5BTS1_VITVI Putative uncharacterized protein OS=Vitis... 34 3.2
tr|A0K0T9|A0K0T9_ARTS2 Putative uncharacterized protein OS=Arthr... 34 4.1
tr|A5C960|A5C960_VITVI Putative uncharacterized protein OS=Vitis... 34 4.1
tr|Q75H42|Q75H42_ORYSJ Putative uncharacterized protein OSJNBa00... 33 5.4
tr|Q4DNF3|Q4DNF3_TRYCR Mucin-associated surface protein (MASP), ... 26 5.6
tr|A7R2I7|A7R2I7_VITVI Chromosome undetermined scaffold_430, who... 33 7.1
tr|A9REQ8|A9REQ8_PHYPA Predicted protein OS=Physcomitrella paten... 33 9.2
tr|A5BFC1|A5BFC1_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2
tr|A5B653|A5B653_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2
tr|A5AWH0|A5AWH0_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2
tr|A5AGJ4|A5AGJ4_VITVI Putative uncharacterized protein OS=Vitis... 33 9.2
tr|Q4DYW7|Q4DYW7_TRYCR Putative uncharacterized protein OS=Trypa... 33 9.2

>tr|A9RN68|A9RN68_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_68351 PE=4 SV=1
Length = 276

Score = 35.8 bits (81), Expect = 1.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3

Query: 370 YPIILGRPWLMAMEAKQNWSTGLIQMKDAKGKSII 266
YPI+LGR WL +AK +WS G + ++ + + ++
Sbjct: 162 YPILLGRLWLYQAKAKNDWSQGTLTIEKGRDQIVL 196


>tr|Q9XH31|Q9XH31_ARATH Putative athila transposon protein
OS=Arabidopsis thaliana GN=F10A2.16 PE=2 SV=1
Length = 683

Score = 34.3 bits (77), Expect = 3.2
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3

Query: 454 GIVNAVKVKAFNTEVEVDIFVMPHKGDGY-PIILGRPWLMAMEAKQNWSTGLIQMKDAKG 278
G++ + VK N E+ +D V+ +G P+ILGRP+L + A + G I + KG
Sbjct: 417 GLIENLPVKIQNVEIPIDFVVLDVDEEGKDPLILGRPFLASAGAVIDVRNGKINLNLEKG 476


>tr|A5BTS1|A5BTS1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013032 PE=4 SV=1
Length = 495

Score = 34.3 bits (77), Expect = 3.2
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = -3

Query: 454 GIVNAVKVKAFNTEVEVDIFVMPH----KGDGY-PIILGRPWLMAMEAKQNWSTGLIQM 293
G++ V V+ N VD V+ KG Y PIILGRP+L A N+ GL+Q+
Sbjct: 321 GMIEDVLVQVDNFYYPVDFVVLDTDPIVKGTNYVPIILGRPFLATSNAIINYRNGLMQL 379


>tr|A0K0T9|A0K0T9_ARTS2 Putative uncharacterized protein
OS=Arthrobacter sp. (strain FB24) GN=Arth_3534 PE=3 SV=1
Length = 255

Score = 33.9 bits (76), Expect = 4.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2

Query: 212 TSPPATTRLPQEKTRPPLTGVTVASK*WESF 120
++PP +T +P E TRP TG + AS W S+
Sbjct: 48 SAPPGSTHVPGETTRPDGTGTSTASAAWTSY 78


>tr|A5C960|A5C960_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_022527 PE=4 SV=1
Length = 2166

Score = 33.9 bits (76), Expect = 4.1
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3

Query: 454 GIVNAVKVKAFNTEVEVDIFVMP-----HKGDGYPIILGRPWLMAMEAKQNWSTGLIQM 293
GI+ V V+ N VD FV+ + + PIILG+P+L A N GL+Q+
Sbjct: 603 GIIEDVLVQVDNFYYPVDFFVLDTDPTVKEANSVPIILGKPFLATSNAIINCRNGLMQL 661


>tr|Q75H42|Q75H42_ORYSJ Putative uncharacterized protein
OSJNBa0006O14.11 (Putative uncharacterized protein
OSJNBa0010H19.4) OS=Oryza sativa subsp. japonica
GN=OSJNBa0006O14.11 PE=4 SV=1
Length = 256

Score = 33.5 bits (75), Expect = 5.4
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3

Query: 454 GIVNAVKVKAFNTEVEVDIFVMP-HKGDGYPIILGRPWLMAMEAKQNWSTGLI 299
GIV V VK N + VD V+ G P+ILGRP+L A + TG I
Sbjct: 107 GIVEDVPVKIRNFFIPVDFVVLDMDMGKETPLILGRPFLSTAGANSDVGTGSI 159


>tr|Q4DNF3|Q4DNF3_TRYCR Mucin-associated surface protein (MASP),
putative OS=Trypanosoma cruzi GN=Tc00.1047053508219.110
PE=4 SV=1
Length = 453

Score = 26.2 bits (56), Expect(2) = 5.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2

Query: 206 PPATTRLPQEKTRPPLT 156
PP T +L E+T PP+T
Sbjct: 201 PPGTNKLQSEETHPPIT 217



Score = 26.2 bits (56), Expect(2) = 5.6
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = -1

Query: 105 RLTQSEATSANQEGSSGMHSLEDVGKLQK 19
++ Q++ ++ ++EG+S +HS E+V L +
Sbjct: 234 KVLQTKGSTKHEEGASSLHSSENVSHLSR 262


>tr|A7R2I7|A7R2I7_VITVI Chromosome undetermined scaffold_430, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00013060001 PE=4 SV=1
Length = 433

Score = 33.1 bits (74), Expect = 7.1
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3

Query: 454 GIVNAVKVKAFNTEVEVDIFVMP-----HKGDGYPIILGRPWLMAMEAKQNWSTGLIQM 293
G++ AV V+ N VD V+ + + PIILGRP+L A N GL+Q+
Sbjct: 229 GVIEAVLVQVDNFYYPVDFIVLDTDPTVKEANLVPIILGRPFLATSNAIINCRNGLMQL 287


>tr|A9REQ8|A9REQ8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_65152 PE=4 SV=1
Length = 159

Score = 32.7 bits (73), Expect = 9.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3

Query: 370 YPIILGRPWLMAMEAKQNWSTGLIQM 293
Y +ILGRPWL + A NW G +++
Sbjct: 40 YLVILGRPWLTEVNAVNNWKPGKLKI 65


>tr|A5BFC1|A5BFC1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037608 PE=4 SV=1
Length = 1589

Score = 32.7 bits (73), Expect = 9.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -3

Query: 454 GIVNAVKVKAFNTEVEVDIFVMP-----HKGDGYPIILGRPWLMAMEAKQNWSTGLIQM 293
GI+ V V+ N VD V+ K + PIILGRP+L A N GL+Q+
Sbjct: 595 GIIEDVLVQVDNFYYPVDFVVLDTDPLVKKANYVPIILGRPFLATSNAIINCRNGLMQL 653