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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913556
Clone id YMU001_000031_E09
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTTCTAGTCGAGCTGGTATGCCGTTTGCAGCAACCCGTCCTGAACCAGTGGCTTTGTCTG
CCTTGTCAAGGCAGCCTGTCGACATTCGAAGAAGACGGTGACCTGTTCTGGAGATCGTAC
TTTCTAATCATGCCATAGGCTTCAATCTGTGATGATCTTTGAAGTGTGTACCTCTCAAGG
TTAGAAATCTTGTTCGGAGGAGCCAATTTATGGAGGAGCTCAAGCATATTGACTTTGCTT
GCCACTTGAGATTTTAACAAAGCGTCTTTAGCAAAATGTAAGGTAAAAGTCTTATTGCAA
GACTTTAGACGTGGAGGATGGATTGTTGGAAGTCTCTGTCTCTGTTCGCTGTGAGGGCTA
TTATTGAGATGACATGAGCTTGCCTATTTTATCTGGCAGGACCCAGGTATGGTAAAAGAG
TATGCTGGAAAGTGGTCATTCTGTGAAGCCTCTTAGTCAACAAGCCTAACTTTTTTGTTT
CAAAGACATTAATT
■■Homology search results ■■ -
sp_hit_id Q7Z3V4
Definition sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens
Align length 89
Score (bit) 30.8
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913556|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_E09.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapie...    31   3.5  
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophil...    30   7.9  

>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens
           GN=UBE3B PE=1 SV=2
          Length = 1068

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = -1

Query: 371 HLNNSPHSEQRQRLPTIHPPRLKSCNKTFTLHFAKDALLKSQVASKV--NMLE--LLHKL 204
           HLN        Q L T    R + C    TL  A    L+  +A++   N++   L+H +
Sbjct: 199 HLNQHGFYSVLQILLTRGLARPRPCLSKGTLTAAFSLALRPVIAAQFSDNLIRPFLIHIM 258

Query: 203 APPNKISNLERYTLQRSSQIEAYGMIRKY 117
           + P  +++L   T +R + +E++ M+RK+
Sbjct: 259 SVPALVTHLSTVTPERLTVLESHDMLRKF 287


>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila
            melanogaster GN=det PE=1 SV=3
          Length = 3598

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 28/103 (27%), Positives = 48/103 (46%)
 Frame = -1

Query: 368  LNNSPHSEQRQRLPTIHPPRLKSCNKTFTLHFAKDALLKSQVASKVNMLELLHKLAPPNK 189
            + NSP +   Q +P + PP+        T   A+ + L SQ++  +N  ++ +   PP K
Sbjct: 1682 VENSPGAVGDQVMPDLLPPQ--------TFRLAESSTLFSQIS--LNPQKVTN--TPPPK 1729

Query: 188  ISNLERYTLQRSSQIEAYGMIRKYDLQNRSPSSSNVDRLP*QG 60
             +  +R      +Q+     IR  ++QN   S  N+D  P QG
Sbjct: 1730 PAKTKRKAPSSPAQVVE---IRVKNIQNDKMSVQNIDLEPQQG 1769
tr_hit_id A5IYS1
Definition tr|A5IYS1|A5IYS1_MYCAP Putative uncharacterized protein OS=Mycoplasma agalactiae (strain PG2)
Align length 79
Score (bit) 34.3
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913556|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_E09.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5IYS1|A5IYS1_MYCAP Putative uncharacterized protein OS=Mycop...    34   3.3  
tr|B0JB17|B0JB17_RHILT DNA ligase D OS=Rhizobium leguminosarum b...    33   7.3  
tr|Q930H5|Q930H5_RHIME Putative uncharacterized protein OS=Rhizo...    33   9.5  

>tr|A5IYS1|A5IYS1_MYCAP Putative uncharacterized protein
           OS=Mycoplasma agalactiae (strain PG2) GN=MAG4820 PE=4
           SV=1
          Length = 483

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 24/79 (30%), Positives = 42/79 (53%)
 Frame = -1

Query: 311 RLKSCNKTFTLHFAKDALLKSQVASKVNMLELLHKLAPPNKISNLERYTLQRSSQIEAYG 132
           RLK   K  TLH +K  L+K+Q+A ++N     +K    +++ N    T  +S  +EA  
Sbjct: 301 RLKIAQKLATLHSSKIKLIKNQIAKRIN---FYYKANKDHELFNKTFSTEVKSKILEAAK 357

Query: 131 MIRKYDLQNRSPSSSNVDR 75
           +     L+N  PS ++++R
Sbjct: 358 L-----LKNEIPSHNDLNR 371


>tr|B0JB17|B0JB17_RHILT DNA ligase D OS=Rhizobium leguminosarum bv.
           trifolii WSM1325 GN=RlegDRAFT_5837 PE=4 SV=1
          Length = 881

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 317 DGLLEVSVSVRCEGYY*DDMSLPILSGRTQVW*KSMLESGHSV 445
           D +L+ +  +  EG    +   P  SGRT+ W KS   SGH V
Sbjct: 397 DAVLQSACKLSLEGIVSKEADAPYQSGRTESWAKSKCRSGHEV 439


>tr|Q930H5|Q930H5_RHIME Putative uncharacterized protein
           OS=Rhizobium meliloti GN=RA0221 PE=4 SV=1
          Length = 556

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 317 DGLLEVSVSVRCEGYY*DDMSLPILSGRTQVW*KSMLESGHSV 445
           D +L  +  +  EG     M  P  SGRT  W KS   +GH V
Sbjct: 394 DAVLRSACKLSLEGIVSKQMDAPYQSGRTDTWAKSKCRAGHEV 436