BP913308 |
Clone id |
YMU001_000028_G12 |
Library |
YMU01 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000028_G12. |
Accession |
BP913308 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4073Contig1 |
Sequence |
TTTTTTTTTTTTGATCCTCCATTGCAATTGCCAATTGGTTATATCCTGAAAACCCATCCA CAAAGGAATAAGTCCGTTTCTCGGCCACCCTCTCAAGTACATGTTCTGTGATTGGCAAGG GATAATTATCCCTTATGTTGGCTACATATACCTTTTTGAGGTTTACACACACTCTCAGTT TTTCGTCCTTTTTAGGGACTACCACAATGGGTGACACCCAATCTGTATGTTCAATTTCAT AGATGAATTCAACTTCCATCAGCTTGTCAATCTCCTCTTTGATTCGTTTAGCAAATGTGT CATTATATGTACAAGGACGCTGTTTGCTAGGTTTTGCATCTGATTTCAAAGGAATTTTAT GTTGGCATATCGATGGATCAACTCCTTTGAGGTCTTTATAGGACCATGCAAACACATCTT TATTCTTCTTGAGAAGTTGTGTTAGCCGTTCTTCTTCTTCAGGCTCTAAATCGGTTGCCA TATAGACCGGATGTGGCTTCTCACCTGGTTCCGCGAGATCTATCCTTTTTGCATTTTCTG GCCCATCGTAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7LHG5 |
Definition |
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae |
Align length |
117 |
Score (bit) |
67.0 |
E-value |
6.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913308|Adiantum capillus-veneris mRNA, clone: YMU001_000028_G12. (540 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 67 6e-11 sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 67 6e-11 sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 50 5e-06 sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha... 49 2e-05 sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic m... 45 3e-04 sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 45 3e-04 sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 45 3e-04 sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 44 5e-04 sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oeno... 39 0.016 sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 39 0.021 sp|P0C6K4|NS1A_HASV1 Non-structural polyprotein 1A OS=Human astr... 36 0.10 sp|Q67726|NS1AB_HASV1 Non-structural polyprotein 1AB OS=Human as... 36 0.10 sp|A5FMM5|QUEA_FLAJ1 S-adenosylmethionine:tRNA ribosyltransferas... 34 0.40 sp|A6GW82|QUEA_FLAPJ S-adenosylmethionine:tRNA ribosyltransferas... 34 0.52 sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing... 33 0.68 sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing... 33 0.89 sp|Q38XM9|MURD_LACSS UDP-N-acetylmuramoylalanine--D-glutamate li... 32 1.5 sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus muscul... 32 1.5 sp|P75452|Y110_MYCPN Uncharacterized protein MPN_110 OS=Mycoplas... 32 2.6 sp|Q1RGS0|TIG_RICBR Trigger factor OS=Rickettsia bellii (strain ... 32 2.6 sp|A8GUQ0|TIG_RICB8 Trigger factor OS=Rickettsia bellii (strain ... 32 2.6 sp|A6LEL6|QUEA_PARD8 S-adenosylmethionine:tRNA ribosyltransferas... 31 4.4 sp|P15205|MAP1B_RAT Microtubule-associated protein 1B OS=Rattus ... 31 4.4 sp|A3QDX8|PYRD_SHELP Dihydroorotate dehydrogenase OS=Shewanella ... 30 7.5 sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot... 30 7.5 sp|Q118P6|CLPX_TRIEI ATP-dependent Clp protease ATP-binding subu... 30 7.5 sp|P98163|YL_DROME Putative vitellogenin receptor OS=Drosophila ... 30 9.8 sp|P94846|UVRB_HELPY UvrABC system protein B OS=Helicobacter pyl... 30 9.8 sp|Q9ZKA0|UVRB_HELPJ UvrABC system protein B OS=Helicobacter pyl... 30 9.8 sp|Q9TVB8|RPE65_CANFA Retinal pigment epithelium-specific 65 kDa... 30 9.8
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2 Length = 1498
Score = 67.0 bits (162), Expect = 6e-11 Identities = 35/117 (29%), Positives = 68/117 (58%) Frame = -3
Query: 352 QHKIPLKSDAKPSKQRPCTYNDTFAKRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKD 173 +H I +K A+ + +P + + I + + KL++ +FI + + SP+V+VPKKD Sbjct: 611 KHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSK-SPCSSPVVLVPKKD 669
Query: 172 EKLRVCVNLKKVYVANIRDNYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAMED 2 R+CV+ + + A I D +PLP +++L R+ + ++ +D SGY+Q+ + +D Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3 Length = 1547
Score = 67.0 bits (162), Expect = 6e-11 Identities = 35/117 (29%), Positives = 68/117 (58%) Frame = -3
Query: 352 QHKIPLKSDAKPSKQRPCTYNDTFAKRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKD 173 +H I +K A+ + +P + + I + + KL++ +FI + + SP+V+VPKKD Sbjct: 585 KHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSK-SPCSSPVVLVPKKD 643
Query: 172 EKLRVCVNLKKVYVANIRDNYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAMED 2 R+CV+ + + A I D +PLP +++L R+ + ++ +D SGY+Q+ + +D Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1058
Score = 50.4 bits (119), Expect = 5e-06 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Frame = -3
Query: 475 VYMATDLEPEEEERLTQLLKKNKDVFAWSYKDLKGVDPSI----CQHKIPLKSDAKPSKQ 308 +Y L EE++RL LL+K D+ L + + +H +PL S Sbjct: 159 LYRLEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKY----- 213
Query: 307 RPCTYNDTFAKRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKDE-----KLRVCVNLK 143 +Y + + ++ +I ++ + I ++ + SPI VVPKK + K R+ ++ + Sbjct: 214 ---SYPQAYEQEVESQIQDMLN-QGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYR 269
Query: 142 KVYVANIRDNYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAME 5 K+ + D +P+P + +L ++ ++ +D G++Q+ + E Sbjct: 270 KLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPE 315
>sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1 Length = 1268
Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 3/106 (2%) Frame = -3
Query: 313 KQRPCTYNDTFAKRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKDE-KLRVCVNLK-K 140 + RP Y A ++ E+++L E+ I I + W +PIVV+ KK K+RVC + K Sbjct: 444 RARPVPYGSLEA--VETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCS 501
Query: 139 VYVANIRDNY-PLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAME 5 A ++D + PLP +E + R+ + YS +D Y Q+ + E Sbjct: 502 GLNAALKDEFHPLPTSEDIFSRL-KGTVYSQIDLKDAYLQVELDEE 546
>sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2 Length = 692
Score = 44.7 bits (104), Expect = 3e-04 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Frame = -3
Query: 304 PCTYNDTFAKRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKDE----KLRVCVNLKKV 137 P T D + KEE + L++ I E + + +P V +E K R+ +N KK+ Sbjct: 210 PYTIRDV--QEFKEECEDLLKKGLIRESQ-SPHSAPAFYVENHNEIKRGKRRMVINYKKM 266
Query: 136 YVANIRDNYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAI 14 A I D+Y LP + +LE++ +S +D SGY QL + Sbjct: 267 NEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRL 307
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1003
Score = 44.7 bits (104), Expect = 3e-04 Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Frame = -3
Query: 271 IKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKK-----DEKLRVCVNLKKVYVANIRDNYP 107 ++ +ID+L++ + I ++ + SPI +VPKK +++ R+ V+ K++ I D YP Sbjct: 139 VERQIDELLQ-DGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197
Query: 106 LPITEHVLERVAEKRTYSFVDGFSGYNQLAIAMED 2 +P L + + ++ +D SG++Q+ + D Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESD 232
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1 Length = 1237
Score = 44.7 bits (104), Expect = 3e-04 Identities = 23/94 (24%), Positives = 56/94 (59%), Gaps = 6/94 (6%) Frame = -3
Query: 277 KRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKD------EKLRVCVNLKKVYVANIRD 116 + I+ ++ KL++ + I E + + SP+++VPKK +K R+ ++ +++ + D Sbjct: 328 EEIQAQVQKLIK-DKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLAD 386
Query: 115 NYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAI 14 +PLP + +L+++ + +S +D SG++Q+ + Sbjct: 387 KFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIEL 420
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1059
Score = 43.9 bits (102), Expect = 5e-04 Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Frame = -3
Query: 316 SKQRPCTYNDTFAKRIKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKKDE-----KLRVCV 152 SKQ P T ++ ++ +++ I E ++ + SP VVPKK + K RV + Sbjct: 209 SKQYPLA--QTHEIEVENQVQEMLNQGLIRE-SNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 151 NLKKVYVANIRDNYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAME 5 + +K+ I D YP+P + +L ++ + + ++ +D G++Q+ + E Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEE 314
>sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oenothera bertiana PE=4 SV=1 Length = 142
Score = 38.9 bits (89), Expect = 0.016 Identities = 17/55 (30%), Positives = 34/55 (61%) Frame = -3
Query: 166 LRVCVNLKKVYVANIRDNYPLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAMED 2 LR+C++ + + I++ YP+P + + +R+A+ ++ +D SGY Q+ IA D Sbjct: 6 LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGD 60
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1 Length = 1035
Score = 38.5 bits (88), Expect = 0.021 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 6/96 (6%) Frame = -3
Query: 271 IKEEIDKLMEVEFIYEIEHTDWVSPIVVVPKK------DEKLRVCVNLKKVYVANIRDNY 110 + E+ +L++ + I + + SP VV KK + R+ ++ +K+ I D Y Sbjct: 197 VNNEVKQLLK-DGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRY 255
Query: 109 PLPITEHVLERVAEKRTYSFVDGFSGYNQLAIAMED 2 P+P +L + + + ++ +D SGY+Q+ +A D Sbjct: 256 PMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHD 291
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BBR9 |
Definition |
tr|A5BBR9|A5BBR9_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
170 |
Score (bit) |
147.0 |
E-value |
3.0e-34 |
Report |
|