NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913262
Clone id YMU001_000028_C11
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000028_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGAAAAAGCGAAGAGATGGCGTGCAGGCGAGAAACGACGCAGGGGAGAAGGAGAAATG
GCTCACACTGCGCTCTCTGGAGCTCGAGTGGCTTCGACACAGAAACGAGAATTGCTCTAC
ATGCTTGGGCGCCCATTTTCGGAACCCTTCCATGCGAATTCGTGCAGGTCGACCTTCGCA
GTGCCACGTCACCAAAAGACCGTGCCCATTAGCGATATCGTTAATGGGTTAGTTGGGAAT
AGAAAGAGGAGAGTTCCTCATGCAGCCAAAAGAGGCTACTATAAAAAGGGAGGGAGCGGC
TCTTTTGTGTCTTCTTCGGGACATTCCTTAGCTGGAGAATCCAAAGCTTTTCTTGAACCA
AGTTTCATCATAATCATAAGCTCTCTAAAGCAAGCGTCCCCTAATCCGCTTGTCAAGCTT
CCATAACCTGCTTAAGCCAAAGGCTCTCGAACTCATTAGCCATCAATCTTAAGCTCTAAG
CCAAGCTTCCATAAGCTCTCTAAGCCAAATCTACTCGGATCTCATTTAGCGAGT
■■Homology search results ■■ -
sp_hit_id Q6AGS4
Definition sp|Q6AGS4|PPCK_LEIXX Phosphoenolpyruvate carboxykinase [GTP] OS=Leifsonia xyli subsp. xyli
Align length 47
Score (bit) 33.9
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913262|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_C11.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AGS4|PPCK_LEIXX Phosphoenolpyruvate carboxykinase [GTP] OS=...    34   0.50 
sp|Q77ZM3|NS1_I91A0 Non-structural protein 1 OS=Influenza A viru...    32   2.5  
sp|Q9Y7V0|MU117_SCHPO Meiotically up-regulated gene 117 protein ...    30   5.7  
sp|P76257|YOAA_ECOLI Probable ATP-dependent helicase yoaA OS=Esc...    30   7.3  
sp|Q93JL5|PPCK_STRCO Phosphoenolpyruvate carboxykinase [GTP] OS=...    30   9.5  
sp|Q8FM16|PPCK_COREF Phosphoenolpyruvate carboxykinase [GTP] OS=...    30   9.5  
sp|Q4R7I0|K1712_MACFA Uncharacterized protein KIAA1712 homolog O...    30   9.5  

>sp|Q6AGS4|PPCK_LEIXX Phosphoenolpyruvate carboxykinase [GTP]
           OS=Leifsonia xyli subsp. xyli GN=pckG PE=3 SV=1
          Length = 612

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -2

Query: 206 GTVFW*RGTAKVDLHEFAWKGSE----NGRPSM*SNSRFCVEATRAP 78
           G V+W   TA+   H   W+G++    +GRP+   NSRF V A + P
Sbjct: 358 GDVWWEGLTAEPPAHLIDWEGNDWTPASGRPAAHPNSRFTVSAAQCP 404


>sp|Q77ZM3|NS1_I91A0 Non-structural protein 1 OS=Influenza A virus
           (strain A/Equine/Alaska/1/1991 H3N8) GN=NS PE=3 SV=1
          Length = 230

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T ++   L  FAW+ S ENGRPS     +  +E T  PE
Sbjct: 181 LIGGLKWNDNTVRISETLQRFAWRSSHENGRPSFPPKQKRKMERTIEPE 229


>sp|Q9Y7V0|MU117_SCHPO Meiotically up-regulated gene 117 protein
           OS=Schizosaccharomyces pombe GN=mug117 PE=1 SV=1
          Length = 186

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 79  GARVASTQKRELLYMLGRPFSEPFHANSCRSTFAVP 186
           G+R+ S  +R L  MLG  +    H N+C+ +F  P
Sbjct: 44  GSRITSNYRRSLFNMLG--YDNSVHPNNCKGSFLCP 77


>sp|P76257|YOAA_ECOLI Probable ATP-dependent helicase yoaA
           OS=Escherichia coli (strain K12) GN=yoaA PE=3 SV=1
          Length = 636

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 233 LGIERGEFLMQPKEATIKREGAALLCLLRDIP*LENP 343
           LGIE+ E L+ P      R+  ALLC+LR++P    P
Sbjct: 412 LGIEQAESLLLPSPFDYSRQ--ALLCVLRNLPQTNQP 446


>sp|Q93JL5|PPCK_STRCO Phosphoenolpyruvate carboxykinase [GTP]
           OS=Streptomyces coelicolor GN=pckG PE=3 SV=1
          Length = 609

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 206 GTVFW*RGTAKVDLHEFAWKGS----ENGRPSM*SNSRFCVEATRAP 78
           G V+W   T +   H   WKG+    E+G P+   N+RF   A + P
Sbjct: 355 GDVWWEGMTEETPAHLTDWKGNDWTPESGTPAAHPNARFTTPAAQCP 401


>sp|Q8FM16|PPCK_COREF Phosphoenolpyruvate carboxykinase [GTP]
           OS=Corynebacterium efficiens GN=pckG PE=3 SV=2
          Length = 612

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -2

Query: 206 GTVFW*RGTAKVDLHEFAWKGS----ENGRPSM*SNSRFCVEATRAPESA 69
           G ++W         H   WKG+    E+ +P+   NSR+CV   + P +A
Sbjct: 353 GDIWWEGMDGDAPEHLIDWKGNDWTPESNQPAAHPNSRYCVAIEQCPTAA 402


>sp|Q4R7I0|K1712_MACFA Uncharacterized protein KIAA1712 homolog
           OS=Macaca fascicularis GN=QtsA-15204 PE=2 SV=1
          Length = 390

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 47  EKEKWLTLRSLELEWLRHRNENCSTCLGAHFRNPSMRIRAGRPSQCHVTKR 199
           E E  L+ ++ E       NE+C++C      NP  + + GRP+   ++ R
Sbjct: 287 ETEMLLSKKNDEYVEFNEINEDCASCSNMDLLNPHRKNKVGRPASIPLSSR 337
tr_hit_id A3R682
Definition tr|A3R682|A3R682_9INFA Nonstructural protein 1 OS=Influenza A virus (A/quail/Shantou/3060/2004(H9N2))
Align length 49
Score (bit) 34.3
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913262|Adiantum capillus-veneris mRNA, clone:
YMU001_000028_C11.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3R682|A3R682_9INFA Nonstructural protein 1 OS=Influenza A vi...    34   4.1  
tr|A3R676|A3R676_9INFA Nonstructural protein 1 OS=Influenza A vi...    34   4.1  
tr|A3R670|A3R670_9INFA Nonstructural protein 1 OS=Influenza A vi...    34   4.1  
tr|A3R668|A3R668_9INFA Nonstructural protein 1 OS=Influenza A vi...    34   4.1  
tr|B3FXQ1|B3FXQ1_9INFA Nonstructural protein 1 OS=Influenza A vi...    33   7.0  
tr|B3FXP3|B3FXP3_9INFA Nonstructural protein 1 OS=Influenza A vi...    33   7.0  
tr|B1MSJ6|B1MSJ6_9INFA Nonstructural protein 1 OS=Influenza A vi...    33   7.0  
tr|A9W9R4|A9W9R4_CHLAA Phosphoenolpyruvate-protein phosphotransf...    33   7.0  
tr|B2QLG0|B2QLG0_9CHLR Phosphoenolpyruvate-protein phosphotransf...    33   7.0  

>tr|A3R682|A3R682_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/quail/Shantou/3060/2004(H9N2)) GN=NS PE=4 SV=1
          Length = 230

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T +V   L  F W+GS ENGRP +    ++ +E T  PE
Sbjct: 181 LIGGLEWNDNTVRVSEALQRFTWRGSDENGRPPLPPKQKWKMERTTGPE 229


>tr|A3R676|A3R676_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/quail/Shantou/1475/2004(H9N2)) GN=NS PE=4 SV=1
          Length = 230

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T +V   L  F W+GS ENGRP +    ++ +E T  PE
Sbjct: 181 LIGGLEWNDNTVRVSEALQRFTWRGSDENGRPPLPPKQKWKMERTTGPE 229


>tr|A3R670|A3R670_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/quail/Shantou/4850/2003(H9N2)) GN=NS PE=4 SV=1
          Length = 230

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T +V   L  F W+GS ENGRP +    ++ +E T  PE
Sbjct: 181 LIGGLEWNDNTVRVSEALQRFTWRGSDENGRPPLPPKQKWKMERTTGPE 229


>tr|A3R668|A3R668_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/quail/Shantou/4044/2003(H9N2)) GN=NS PE=4 SV=1
          Length = 230

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T +V   L  F W+GS ENGRP +    ++ +E T  PE
Sbjct: 181 LIGGLEWNDNTVRVSEALQRFTWRGSDENGRPPLPPKQKWKMERTTGPE 229


>tr|B3FXQ1|B3FXQ1_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/canine/Miami/2005(H3N8)) GN=NS1 PE=4 SV=1
          Length = 230

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T ++   L  FAW+ S ENGRPS  S  +  +E T  PE
Sbjct: 181 LIGGLKWNDNTVRISETLQRFAWRSSHENGRPSFPSKQKRKMERTIKPE 229


>tr|B3FXP3|B3FXP3_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/canine/Jacksonville/2005(H3N8)) GN=NS1 PE=4 SV=1
          Length = 230

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T ++   L  FAW+ S ENGRPS  S  +  +E T  PE
Sbjct: 181 LIGGLKWNDNTVRISETLQRFAWRSSHENGRPSFPSKQKRKMERTIKPE 229


>tr|B1MSJ6|B1MSJ6_9INFA Nonstructural protein 1 OS=Influenza A virus
           (A/equine/California/4537/1997(H3N8)) GN=NS1 PE=4 SV=1
          Length = 230

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 212 LMGTVFW*RGTAKVD--LHEFAWKGS-ENGRPSM*SNSRFCVEATRAPE 75
           L+G + W   T ++   L  FAW+ S ENGRPS  S  +  +E T  PE
Sbjct: 181 LIGGLKWNDNTVRISETLQRFAWRSSHENGRPSFPSKQKRKMERTIEPE 229


>tr|A9W9R4|A9W9R4_CHLAA Phosphoenolpyruvate-protein
           phosphotransferase OS=Chloroflexus aurantiacus (strain
           ATCC 29366 / DSM 635 / J-10-fl) GN=Caur_1322 PE=4 SV=1
          Length = 553

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +3

Query: 45  GRRRNGSHCALWSSSGFDTETRIALHAWAPIFGTLPCEFVQVDLRSATSPKDRAH*RYR 221
           GR R+G   ALW++ G   E R+A    A   G    EF+ +D RSA   +D     YR
Sbjct: 257 GRLRDGRSIALWANIGRPAEARLARDNGAEGIGLFRTEFLFLD-RSAPPDEDEQFAAYR 314


>tr|B2QLG0|B2QLG0_9CHLR Phosphoenolpyruvate-protein
           phosphotransferase OS=Chloroflexus sp. Y-400-fl
           GN=Chy400DRAFT_1842 PE=4 SV=1
          Length = 552

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +3

Query: 45  GRRRNGSHCALWSSSGFDTETRIALHAWAPIFGTLPCEFVQVDLRSATSPKDRAH*RYR 221
           GR R+G   ALW++ G   E R+A    A   G    EF+ +D RSA   +D     YR
Sbjct: 256 GRLRDGRSIALWANIGRPAEARLARDNGAEGIGLFRTEFLFLD-RSAPPDEDEQFAAYR 313