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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913156
Clone id YMU001_000027_B03
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000027_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAAGGGGGGAATGCTCGTGGCAGTAGGGAGCGGGCTGGGCCCTCCGGGGGAAGAATGGGG
GCAGGTTTAATTGAAACGCCACCTTTGCCACTGCCTTTACCAAGCATGCGACCGGACTCA
AGACGTCCTCTTCGAAGTTACCGAGATTTGGACGCACCGGAGGATGAAGTTACAGTTATT
GACTACAGAAGTCTATGATGTCCTGGTCGCCCGGAGCATATTTCGAGGAGAGTGTTTGAT
GCAGATAAAAGCTTTTTCACGAGAAATATGAGGGGGATATGAACCTGCTATTTGCTCATG
CATTCTATGGCATTTCAGCAATGGTGTCTATACCTGATCAGCAACCACTTGCATTCAGTG
CTCACATAAGCAAGAAGTGTTTCTGATAGTTTTGTATGTTGCCTACCTCAACAACGATGT
TGTGGTTATTGACAGGTGCTGCATCAAATCCTGTGAAGAAAATGCCACAAGCTTTAGTAA
TTGAAATACAATTGCAATGTAAAAACTGGAAGAATTCGCGGCCGCGAATT
■■Homology search results ■■ -
sp_hit_id Q6ZPI0
Definition sp|Q6ZPI0|JADE1_MOUSE Protein Jade-1 OS=Mus musculus
Align length 50
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913156|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B03.
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZPI0|JADE1_MOUSE Protein Jade-1 OS=Mus musculus GN=Phf17 PE...    32   1.7  
sp|Q6IE81|JADE1_HUMAN Protein Jade-1 OS=Homo sapiens GN=PHF17 PE...    32   2.2  

>sp|Q6ZPI0|JADE1_MOUSE Protein Jade-1 OS=Mus musculus GN=Phf17 PE=1
           SV=2
          Length = 834

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 113 RTQDVLFEVTEIWTHRRMKLQLLTTEVYDVLVARSIFRGECLMQIKAFSR 262
           R QDVLF   +++TH R  L+ +    Y V     I R  C +Q + F++
Sbjct: 481 REQDVLFRRLQLFTHLRQDLERVRNLTYMVTRREKIKRSVCKVQEQIFTQ 530


>sp|Q6IE81|JADE1_HUMAN Protein Jade-1 OS=Homo sapiens GN=PHF17 PE=1
           SV=1
          Length = 842

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 113 RTQDVLFEVTEIWTHRRMKLQLLTTEVYDVLVARSIFRGECLMQIKAFS 259
           R QDVLF   +++TH R  L+ +    Y V     I R  C +Q + F+
Sbjct: 480 REQDVLFRRLQLFTHLRQDLERVRNLTYMVTRREKIKRSVCKVQEQIFN 528
tr_hit_id A7QAH6
Definition tr|A7QAH6|A7QAH6_VITVI Chromosome undetermined scaffold_71, whole genome shotgun sequence OS=Vitis vinifera
Align length 19
Score (bit) 40.8
E-value 0.037
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913156|Adiantum capillus-veneris mRNA, clone:
YMU001_000027_B03.
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QAH6|A7QAH6_VITVI Chromosome undetermined scaffold_71, whol...    41   0.037
tr|A7PG49|A7PG49_VITVI Chromosome chr6 scaffold_15, whole genome...    41   0.037
tr|A9S5Z4|A9S5Z4_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.048
tr|Q94FY5|Q94FY5_9POAL C2H2 zinc-finger protein SERRATE (Fragmen...    40   0.081
tr|Q94FY4|Q94FY4_MAIZE C2H2 zinc-finger protein (Fragment) OS=Ze...    40   0.081
tr|Q94FY3|Q94FY3_MAIZE C2H2 zinc-finger protein (Fragment) OS=Ze...    40   0.081
tr|Q7EZ93|Q7EZ93_ORYSJ Os08g0517300 protein OS=Oryza sativa subs...    40   0.081
tr|B8B8W4|B8B8W4_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.081
tr|B4FHA9|B4FHA9_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.081
tr|A9SR08|A9SR08_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.081
tr|A3BUV1|A3BUV1_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.081
tr|Q9ZVD0|Q9ZVD0_ARATH Expressed protein (At2g27100/T20P8.15) (P...    39   0.11 
tr|Q6Z422|Q6Z422_ORYSJ Os02g0149600 protein OS=Oryza sativa subs...    39   0.18 
tr|B8AHS1|B8AHS1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.18 
tr|A3A360|A3A360_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.18 
tr|Q5Z4U6|Q5Z4U6_ORYSJ Putative C2H2 zinc-finger protein OS=Oryz...    37   0.53 
tr|B8B241|B8B241_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.53 
tr|B7ZXU2|B7ZXU2_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.53 
tr|A9TZR0|A9TZR0_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.2  
tr|Q987Z8|Q987Z8_RHILO Mll6836 protein OS=Rhizobium loti GN=mll6...    34   4.5  
tr|B6WL08|B6WL08_9BACE Putative uncharacterized protein OS=Bacte...    33   7.6  

>tr|A7QAH6|A7QAH6_VITVI Chromosome undetermined scaffold_71, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00033932001 PE=4 SV=1
          Length = 522

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTVIDYRSL
Sbjct: 504 YQDLDAPEDEVTVIDYRSL 522


>tr|A7PG49|A7PG49_VITVI Chromosome chr6 scaffold_15, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017374001
           PE=4 SV=1
          Length = 715

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTVIDYRSL
Sbjct: 697 YQDLDAPEDEVTVIDYRSL 715


>tr|A9S5Z4|A9S5Z4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_124567 PE=4 SV=1
          Length = 541

 Score = 40.4 bits (93), Expect = 0.048
 Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +1

Query: 4   GGNARGSRERAGPSGGRMGA------GLIETXXXXXXXXXXXXXXXXXXXXYRDLDAPED 165
           GG   G +E  GP GG+ GA      G I                      Y DLDAPED
Sbjct: 473 GGFDSGYQEE-GPRGGKRGAPGPMMGGGILDIPPMMMPSHGMRRDPRGVRSYHDLDAPED 531

Query: 166 EVTVIDYRSL 195
           EV+VIDYRSL
Sbjct: 532 EVSVIDYRSL 541


>tr|Q94FY5|Q94FY5_9POAL C2H2 zinc-finger protein SERRATE (Fragment)
           OS=Saccharum hybrid cultivar PE=2 SV=1
          Length = 345

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTV+DYRSL
Sbjct: 327 YQDLDAPEDEVTVMDYRSL 345


>tr|Q94FY4|Q94FY4_MAIZE C2H2 zinc-finger protein (Fragment) OS=Zea
           mays GN=SE1A PE=4 SV=1
          Length = 504

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTV+DYRSL
Sbjct: 486 YQDLDAPEDEVTVMDYRSL 504


>tr|Q94FY3|Q94FY3_MAIZE C2H2 zinc-finger protein (Fragment) OS=Zea
           mays GN=SE1B PE=2 SV=1
          Length = 528

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTV+DYRSL
Sbjct: 510 YQDLDAPEDEVTVMDYRSL 528


>tr|Q7EZ93|Q7EZ93_ORYSJ Os08g0517300 protein OS=Oryza sativa subsp.
           japonica GN=P0686C03.151 PE=2 SV=1
          Length = 647

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTV+DYRSL
Sbjct: 629 YQDLDAPEDEVTVMDYRSL 647


>tr|B8B8W4|B8B8W4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29889 PE=4 SV=1
          Length = 647

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTV+DYRSL
Sbjct: 629 YQDLDAPEDEVTVMDYRSL 647


>tr|B4FHA9|B4FHA9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 174

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 139 YRDLDAPEDEVTVIDYRSL 195
           Y+DLDAPEDEVTV+DYRSL
Sbjct: 156 YQDLDAPEDEVTVMDYRSL 174


>tr|A9SR08|A9SR08_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_133793 PE=4 SV=1
          Length = 539

 Score = 39.7 bits (91), Expect = 0.081
 Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +1

Query: 4   GGNARGSRERA--GPSGGRMGA-------GLIETXXXXXXXXXXXXXXXXXXXXYRDLDA 156
           GG   G +E    GP GG+ GA       GL++                     Y DLDA
Sbjct: 468 GGFDAGYQEEGNGGPRGGKRGAPGPMMEGGLLDIPPNMMPPHGMRRDPRGVRS-YHDLDA 526

Query: 157 PEDEVTVIDYRSL 195
           PEDEV+VIDYRSL
Sbjct: 527 PEDEVSVIDYRSL 539