BP913064
Clone id YMU001_000026_A12
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000026_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGCTAGGGAAACCAACGAGGAAGGGGCTGCAGCTGCAGGTGGGAGGATGTGAGGAGCTCT
ATCATGCTAATGGCAGATCAAAGGCCAGTACGAGCTGCAACGCTTGCAAAAGGATGGACT
GGAAAGTAAAAGTTGAGAGTTCTGTATAGGCAATTCTATATTGGCATTAACAGAGGCGTA
AATGGGCAGATTGGCAGTTGTTTAGACAAGGGGCTACAAAATTCAGGATGGCTTTGCATG
CTTCAGAGGCAATGAGGTAAAGTATGCTGCTTGCGAGCAGAGTGGAGTAAAATTAGCCAC
TCATTGCTTTTCAGTTAACTTCCTAGGAGAGTTATTTGTGAGGGTCAAGTAACTTTTACC
TTCAGTAATACTAGGTGCAGTGTACTCCAGGCACATAACATTAATTCTTTATACCCGAGA
GGTTTATTTATTTTGTACAATGCTGATTGTAATGAGTACCTAATGCCTATAGTTTTTGCA
CCCGTCACAGATGTGGAGGGGCTAGTGTTTGTAGTCAAGGTGATAGTAGTGTGTCAAAAG
CATACAAGCTTCACTGCACAGTAATGATGTCGGATGAAACATACATT
■■Homology search results ■■ -
sp_hit_id Q0VKY2
Definition sp|Q0VKY2|UREE_ALCBS Urease accessory protein ureE OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
Align length 36
Score (bit) 33.5
E-value 0.81
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913064|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_A12.
(587 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0VKY2|UREE_ALCBS Urease accessory protein ureE OS=Alcanivora... 33 0.81
sp|Q6QR59|EAPA2_MOUSE Experimental autoimmune prostatitis antige... 31 5.2
sp|Q9NVV0|TM38B_HUMAN Trimeric intracellular cation channel type... 30 6.8
sp|A7HS58|UPPP_PARL1 Undecaprenyl-diphosphatase OS=Parvibaculum ... 30 8.9

>sp|Q0VKY2|UREE_ALCBS Urease accessory protein ureE OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=ureE PE=3 SV=1
Length = 176

Score = 33.5 bits (75), Expect = 0.81
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3

Query: 570 TSLLCSEACMLLTHYYHLDYKH*PLHICDGCKNYRH 463
++++CS+A ML YHL +H PL I G Y+H
Sbjct: 81 STIVCSDALMLTKVAYHLGNRHVPLQIETGFVRYQH 116


>sp|Q6QR59|EAPA2_MOUSE Experimental autoimmune prostatitis antigen 2
OS=Mus musculus GN=Eapa2 PE=2 SV=1
Length = 914

Score = 30.8 bits (68), Expect = 5.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2

Query: 149 GNSILALTEA*MGRLAVV*TRGYKIQDGFACFRGNEVKYAACEQSGVKLATH---CFSVN 319
G ++A + GRL VV Y + DG F N VK+ C G +A H VN
Sbjct: 46 GQVLIAASSYGQGRLVVVSHESYLLHDGLVPFLLNVVKW-LCPCPGAPIAVHSSLASLVN 104

Query: 320 FLGE 331
LG+
Sbjct: 105 ILGD 108


>sp|Q9NVV0|TM38B_HUMAN Trimeric intracellular cation channel type B
OS=Homo sapiens GN=TMEM38B PE=1 SV=1
Length = 291

Score = 30.4 bits (67), Expect = 6.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1

Query: 280 EWSKISHSLLFS*LPRRVICEGQVTFTFSNTRCSVLQAHNINSLY 414
EW K+S+ P +V G V FTF +T+ + HN+ LY
Sbjct: 175 EWLKMSY-------PAKVTLLGSVIFTFQHTQHLAISKHNLMFLY 212


>sp|A7HS58|UPPP_PARL1 Undecaprenyl-diphosphatase OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=uppP PE=3 SV=1
Length = 268

Score = 30.0 bits (66), Expect = 8.9
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2

Query: 317 NFLGELFVRVK*LLPSVILGAVYSRHITLILYTREVYLFCTMLI 448
NF+G +FV L+P+ +LG +Y I +L+T Y+ C LI
Sbjct: 82 NFIGAIFVA---LIPAGLLGVLYHDFILEVLFT--PYVVCAALI 120


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913064|Adiantum capillus-veneris mRNA, clone:
YMU001_000026_A12.
(587 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******