BP913045
Clone id YMU001_000025_G09
Library
Length 326
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATCCCTTTACGTTCCAAAATTGGATAGTGAGCGACTCCATCAGTAATAAGGGGTTCATCG
TCATAGAGGAATGAATTGTATAGCATCCAAATCATTCCGCCCCCCCCGTTGGTCTTAAGA
GAATCCCGGGGTTCCAAGTCAGGGGATTTCTTTTCTTGCAGTTGTGCAAATGGATTGTGC
AGTGGGACAGTGAAACCCACTCCTTTCTCAGGGGTGGAGGATGGATTAGATCCTTTCACC
TCAGTGTTCTCACGACTTGAAGCGCTTTGGAGTCTCTTGCCATTGCCTTCACCCTTTTGG
CTCTTTTCAGACCAGGACTTGAACAA
■■Homology search results ■■ -
sp_hit_id Q9CWK8
Definition sp|Q9CWK8|SNX2_MOUSE Sorting nexin-2 OS=Mus musculus
Align length 27
Score (bit) 33.1
E-value 0.45
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913045|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_G09.
(326 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9CWK8|SNX2_MOUSE Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=... 33 0.45
sp|P17629|HPR1_YEAST THO complex subunit HPR1 OS=Saccharomyces c... 31 1.7
sp|Q5R9A9|SNX2_PONAB Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=... 31 2.2
sp|P0C220|SNX2_MACFA Sorting nexin-2 OS=Macaca fascicularis GN=S... 31 2.2
sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=... 31 2.2
sp|Q75JZ1|GTAC_DICDI GATA zinc finger domain-containing protein ... 31 2.2
sp|Q96K30|CL052_HUMAN Uncharacterized protein C12orf52 OS=Homo s... 31 2.2
sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 ... 30 2.9
sp|Q8IYA7|MKX_HUMAN Homeobox protein Mohawk OS=Homo sapiens GN=M... 30 2.9
sp|Q7Z4V5|HDGR2_HUMAN Hepatoma-derived growth factor-related pro... 30 2.9
sp|Q5R6P2|MKX_PONAB Homeobox protein Mohawk OS=Pongo abelii GN=M... 30 3.8
sp|Q9IAC6|MCR_ONCMY Mineralocorticoid receptor (Fragment) OS=Onc... 30 3.8
sp|Q8K124|PKHO2_MOUSE Pleckstrin homology domain-containing fami... 30 5.0
sp|Q562D5|NP60_XENTR Nuclear protein NP60 OS=Xenopus tropicalis ... 30 5.0
sp|Q6UXF1|TM108_HUMAN Transmembrane protein 108 OS=Homo sapiens ... 29 6.5
sp|A1S6Z2|HIS8_SHEAM Histidinol-phosphate aminotransferase OS=Sh... 29 6.5
sp|Q2HJ75|CL052_BOVIN Uncharacterized protein C12orf52 homolog O... 29 6.5
sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing ... 29 8.5
sp|Q8FVU9|GCSP_BRUSU Glycine dehydrogenase [decarboxylating] OS=... 29 8.5
sp|A5VV25|GCSP_BRUO2 Glycine dehydrogenase [decarboxylating] OS=... 29 8.5
sp|P62921|GCSP_BRUME Glycine dehydrogenase [decarboxylating] OS=... 29 8.5
sp|A9MC11|GCSP_BRUC2 Glycine dehydrogenase [decarboxylating] OS=... 29 8.5
sp|P62920|GCSP_BRUAB Glycine dehydrogenase [decarboxylating] OS=... 29 8.5
sp|Q2YKX9|GCSP_BRUA2 Glycine dehydrogenase [decarboxylating] OS=... 29 8.5
sp|Q96LJ7|DHRS1_HUMAN Dehydrogenase/reductase SDR family member ... 29 8.5

>sp|Q9CWK8|SNX2_MOUSE Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1
SV=2
Length = 519

Score = 33.1 bits (74), Expect = 0.45
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1

Query: 184 GTVKPTPFSGVEDGLDPFTSVFSRLEA 264
G VKPT F +EDG D FTS S LE+
Sbjct: 11 GDVKPTDFEELEDGEDLFTSTVSTLES 37


>sp|P17629|HPR1_YEAST THO complex subunit HPR1 OS=Saccharomyces
cerevisiae GN=HPR1 PE=1 SV=2
Length = 752

Score = 31.2 bits (69), Expect = 1.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1

Query: 257 SRENTEVKGSNPSST-PEKGVGFTVPLHNPFAQLQEKKSPDLEPRDSLKTNG 105
S ENT++K S SS P+ GV N AQL+ K+ D S +NG
Sbjct: 694 SEENTKIKSSEVSSQDPDSGVAGEFAPQNTTAQLENPKTEDNNAATSNISNG 745


>sp|Q5R9A9|SNX2_PONAB Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2
SV=1
Length = 523

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1

Query: 184 GTVKPTPFSGVEDGLDPFTSVFSRLEA 264
G KPT F +EDG D FTS S LE+
Sbjct: 11 GDGKPTDFEDLEDGEDLFTSTVSTLES 37


>sp|P0C220|SNX2_MACFA Sorting nexin-2 OS=Macaca fascicularis GN=SNX2
PE=2 SV=1
Length = 523

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1

Query: 184 GTVKPTPFSGVEDGLDPFTSVFSRLEA 264
G KPT F +EDG D FTS S LE+
Sbjct: 11 GDGKPTDFEDLEDGEDLFTSTVSTLES 37


>sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1
SV=2
Length = 519

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1

Query: 184 GTVKPTPFSGVEDGLDPFTSVFSRLEA 264
G KPT F +EDG D FTS S LE+
Sbjct: 11 GDGKPTDFEDLEDGEDLFTSTVSTLES 37


>sp|Q75JZ1|GTAC_DICDI GATA zinc finger domain-containing protein 3
OS=Dictyostelium discoideum GN=gtaC PE=4 SV=1
Length = 587

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1

Query: 293 GEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFTVPL 180
G GNG + ++ N V GS S++ +GF++PL
Sbjct: 264 GNGNGNGNGNNNNNNNIGVNGSGSSNSSSPSIGFSIPL 301


>sp|Q96K30|CL052_HUMAN Uncharacterized protein C12orf52 OS=Homo
sapiens GN=C12orf52 PE=2 SV=1
Length = 269

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -1

Query: 314 WSEKSQKGEGNGKRLQSA----SSRENTEVKGSNPSSTPEKGVGFTVPLHNP 171
W EK+ + G GK A S E T +GS P+ TP K + H P
Sbjct: 56 WVEKANRTRGVGKEASKALGAKGSCETTPSRGSTPTLTPRKKNKYRPISHTP 107


>sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2
SV=1
Length = 519

Score = 30.4 bits (67), Expect = 2.9
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1

Query: 184 GTVKPTPFSGVEDGLDPFTSVFSRLEA 264
G KPT F +EDG D FTS S LE+
Sbjct: 11 GDGKPTDFEELEDGEDLFTSTVSTLES 37


>sp|Q8IYA7|MKX_HUMAN Homeobox protein Mohawk OS=Homo sapiens GN=MKX
PE=2 SV=1
Length = 352

Score = 30.4 bits (67), Expect = 2.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1

Query: 290 EGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFTVPLHNP 171
+GN +RL S SS ++ G NP T G+ P+H+P
Sbjct: 151 QGNAERL-SVSSDDSCSEDGENPPRTHMNEGGYNTPVHHP 189


>sp|Q7Z4V5|HDGR2_HUMAN Hepatoma-derived growth factor-related
protein 2 OS=Homo sapiens GN=HDGFRP2 PE=1 SV=1
Length = 671

Score = 30.4 bits (67), Expect = 2.9
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = -1

Query: 320 KSWSEKSQKGEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSP 141
K+ S+ Q + S SS E+ K S+ TPEK P P ++KK+P
Sbjct: 172 KASSDLDQASVSPSEEENSESSSESE--KTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAP 229

Query: 140 DLEPRDSLKTNGG 102
DS + G
Sbjct: 230 SASDSDSKADSDG 242


tr_hit_id Q7XI72
Definition tr|Q7XI72|Q7XI72_ORYSJ Putative pre-mRNA splicing factor SF2 OS=Oryza sativa subsp. japonica
Align length 64
Score (bit) 36.6
E-value 0.63
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913045|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_G09.
(326 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7XI72|Q7XI72_ORYSJ Putative pre-mRNA splicing factor SF2 OS=... 37 0.63
tr|Q0D3Q1|Q0D3Q1_ORYSJ Os07g0673500 protein OS=Oryza sativa subs... 37 0.63
tr|A6MZR5|A6MZR5_ORYSI Pre mRNA splicing factor sf2 (Fragment) O... 37 0.63
tr|B6M188|B6M188_BRAFL Putative uncharacterized protein OS=Branc... 36 0.83
tr|B5E1G0|B5E1G0_DROPS GA25088 OS=Drosophila pseudoobscura pseud... 36 0.83
tr|B4H501|B4H501_DROPE GL10137 OS=Drosophila persimilis GN=GL101... 36 0.83
tr|Q4WP26|Q4WP26_ASPFU Putative uncharacterized protein OS=Asper... 36 0.83
tr|B0Y5X2|B0Y5X2_ASPFC Putative uncharacterized protein OS=Asper... 36 0.83
tr|A8RG95|A8RG95_9CLOT Putative uncharacterized protein OS=Clost... 36 1.1
tr|B5X243|B5X243_SALSA Programmed cell death protein 4 OS=Salmo ... 35 2.4
tr|Q586E3|Q586E3_9TRYP Putative uncharacterized protein OS=Trypa... 34 3.2
tr|Q586D6|Q586D6_9TRYP Putative uncharacterized protein OS=Trypa... 34 3.2
tr|P83954|P83954_TORCA Postsynaptic membrane protein OS=Torpedo ... 34 4.1
tr|Q91VZ1|Q91VZ1_MOUSE Snx2 protein OS=Mus musculus GN=Snx2 PE=2... 33 7.0
tr|Q3U5L3|Q3U5L3_MOUSE Putative uncharacterized protein OS=Mus m... 33 7.0
tr|B2RYP4|B2RYP4_RAT Sorting nexin 2 OS=Rattus norvegicus GN=Snx... 33 7.0
tr|A8MD33|A8MD33_CALMQ Sulfite reductase, dissimilatory-type bet... 33 7.0
tr|B0JZ66|B0JZ66_XENTR LOC100145160 protein OS=Xenopus tropicali... 33 9.2
tr|A8JFL8|A8JFL8_CHLRE Predicted protein OS=Chlamydomonas reinha... 33 9.2
tr|B5DVX1|B5DVX1_DROPS GA26251 OS=Drosophila pseudoobscura pseud... 33 9.2
tr|B4GMC7|B4GMC7_DROPE GL12276 OS=Drosophila persimilis GN=GL122... 33 9.2
tr|A9V6E8|A9V6E8_MONBE Predicted protein OS=Monosiga brevicollis... 33 9.2
tr|A5E520|A5E520_LODEL Putative uncharacterized protein OS=Lodde... 33 9.2

>tr|Q7XI72|Q7XI72_ORYSJ Putative pre-mRNA splicing factor SF2
OS=Oryza sativa subsp. japonica GN=P0470D12.143-1 PE=4
SV=1
Length = 362

Score = 36.6 bits (83), Expect = 0.63
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -1

Query: 320 KSWSEKSQKGEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSP 141
KS KS + + R +SASSR +E KG +PS +P + N A +K+SP
Sbjct: 278 KSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSP 337

Query: 140 DLEP 129
P
Sbjct: 338 SRSP 341


>tr|Q0D3Q1|Q0D3Q1_ORYSJ Os07g0673500 protein OS=Oryza sativa subsp.
japonica GN=Os07g0673500 PE=4 SV=1
Length = 296

Score = 36.6 bits (83), Expect = 0.63
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -1

Query: 320 KSWSEKSQKGEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSP 141
KS KS + + R +SASSR +E KG +PS +P + N A +K+SP
Sbjct: 212 KSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSP 271

Query: 140 DLEP 129
P
Sbjct: 272 SRSP 275


>tr|A6MZR5|A6MZR5_ORYSI Pre mRNA splicing factor sf2 (Fragment)
OS=Oryza sativa subsp. indica PE=2 SV=1
Length = 154

Score = 36.6 bits (83), Expect = 0.63
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -1

Query: 320 KSWSEKSQKGEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSP 141
KS KS + + R +SASSR +E KG +PS +P + N A +K+SP
Sbjct: 70 KSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSP 129

Query: 140 DLEP 129
P
Sbjct: 130 SRSP 133


>tr|B6M188|B6M188_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_121497 PE=4 SV=1
Length = 1397

Score = 36.2 bits (82), Expect = 0.83
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = -1

Query: 311 SEKSQKGEGNGKRLQSASS----RENTEVKGSNPSSTPEKGVGF----TVP-LHNPFAQL 159
S++S G G +LQ +S + ++ S PS PEK VGF T P L PF++
Sbjct: 779 SDQSLDGSAKGLKLQGDTSSVDLNTSMDLGASIPSHQPEKKVGFGREDTAPDLFAPFSRF 838

Query: 158 QEKKSPDLEPRDSLK 114
+ + PD + SLK
Sbjct: 839 KSGEEPDSGQKSSLK 853


>tr|B5E1G0|B5E1G0_DROPS GA25088 OS=Drosophila pseudoobscura
pseudoobscura GN=GA25088 PE=4 SV=1
Length = 791

Score = 36.2 bits (82), Expect = 0.83
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Frame = -1

Query: 308 EKSQKGEGNGKRLQSASSR-ENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSPDLE 132
E+++ GEG + ++ A +R E+ E G+ P++ G L N F +
Sbjct: 230 EEAKTGEGADEGVEEAEARAEDEETAGAQPAAATASGK--KRKLINQFNYCERAALTYTN 287

Query: 131 PRDSLKTN---------GGGGMIWMLYNSFLYDDEPLITDGVA 30
P S+ T GG + W++Y+S+L D E DG A
Sbjct: 288 PTRSVDTQTIPPPRSQFGGNVLQWVIYDSYLQDFEAQSKDGAA 330


>tr|B4H501|B4H501_DROPE GL10137 OS=Drosophila persimilis GN=GL10137
PE=4 SV=1
Length = 562

Score = 36.2 bits (82), Expect = 0.83
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Frame = -1

Query: 308 EKSQKGEGNGKRLQSASSR-ENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSPDLE 132
E+++ GEG + ++ A +R E+ E G+ P++ G L N F +
Sbjct: 180 EEAKTGEGADEGVEEAETRAEDEETAGAQPAAATASGK--KRKLINQFNYCERAALTYTN 237

Query: 131 PRDSLKTN---------GGGGMIWMLYNSFLYDDEPLITDGVA 30
P S+ T GG + W++Y+S+L D E DG A
Sbjct: 238 PTRSVDTQTIPPPRSQFGGNVLQWVIYDSYLQDFEAQSKDGTA 280


>tr|Q4WP26|Q4WP26_ASPFU Putative uncharacterized protein
OS=Aspergillus fumigatus GN=AFUA_4G07790 PE=4 SV=2
Length = 687

Score = 36.2 bits (82), Expect = 0.83
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -1

Query: 314 WSEKSQKGEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFT----VPLHNPFAQLQEKK 147
W K Q+ + + + AS+ + PS++P+ V VPL + L K+
Sbjct: 38 WVTKFQEPDNDQTSISEASASRSIRSSDRRPSASPKSPVFIDSLPQVPLALDSSNLNSKR 97

Query: 146 SPDLEPRDSLKTNGGGGMIWMLYNSFLYDDEPLITD 39
+ + L+TNGGG + L++ D P +TD
Sbjct: 98 PEEPSETEVLETNGGGVLCDNLWDLQSTDSLPELTD 133


>tr|B0Y5X2|B0Y5X2_ASPFC Putative uncharacterized protein
OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
FGSC A1163) GN=AFUB_064890 PE=4 SV=1
Length = 687

Score = 36.2 bits (82), Expect = 0.83
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -1

Query: 314 WSEKSQKGEGNGKRLQSASSRENTEVKGSNPSSTPEKGVGFT----VPLHNPFAQLQEKK 147
W K Q+ + + + AS+ + PS++P+ V VPL + L K+
Sbjct: 38 WVTKFQEPDNDQTSISEASASRSIRSSDRRPSASPKSPVFIDSLPQVPLALDSSNLNSKR 97

Query: 146 SPDLEPRDSLKTNGGGGMIWMLYNSFLYDDEPLITD 39
+ + L+TNGGG + L++ D P +TD
Sbjct: 98 PEEPSETEVLETNGGGVLCDNLWDLQSTDSLPELTD 133


>tr|A8RG95|A8RG95_9CLOT Putative uncharacterized protein
OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_00080 PE=4
SV=1
Length = 475

Score = 35.8 bits (81), Expect = 1.1
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1

Query: 76 LYSIQIIPPPPLVLRESRGSKSG-DFFSCSCANGLCSGTVKPTPFSGVEDGLDPFTSVFS 252
LY + + P P LV R + G+ D F+ + + + G+E+G +PF+ +FS
Sbjct: 203 LYEVSVTPKPGLVDRNNTGAHQDMDIFTFEASAVSLNHYFEQFALCGIENGHEPFSRIFS 262

Query: 253 RLEA 264
RL +
Sbjct: 263 RLRS 266


>tr|B5X243|B5X243_SALSA Programmed cell death protein 4 OS=Salmo
salar GN=PDCD4 PE=2 SV=1
Length = 472

Score = 34.7 bits (78), Expect = 2.4
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1

Query: 278 KRLQSASSRENTEVKGSNPSSTPEKGVGFTVPLHNPFAQLQEKKSPDLEPRDSLKTNGGG 99
+RL+ SSR++ + + P +G TVP +P ++L ++KS + R K G G
Sbjct: 63 RRLRKTSSRDSGRGDSFSDNGDPSRGTNGTVPPTSPKSKLLDRKSRAGKGRGLPKKGGAG 122

Query: 98 GM-IW 87
G +W
Sbjct: 123 GKGVW 127