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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913037
Clone id YMU001_000025_F12
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAGGTGAAATCGAGGATGAGATAGTGAGGAATTTGCATACAAAAGCAATTGAAAGTAAT
GACAGCTCAAGAATGAACCCAATCACGATTCAAGATAAGAATCATGAATTGAAATTTGAA
TGAATGATGATGAATGATTCTGGTACATCAAGATTCCCATATGAATGAAATAACTCGAAA
CTATGGTGAGCGCATCAAGAGTTTCCGGAGGGATGAAATGACTGCACAAGAATCTAGGTG
CATCAAGACCTTTGGACGGATGAGATGACTAGACTGAATGATTGAAACACCGTGTTCAAT
ATGAACTAAGTGTGTGATTTGTGAACTGCATGTTCAATGAATGAAGAACTTTGAAACTAG
AATGCCCAAAAAGGAATCTGATTTTTGTGTACTCACTCATGTGATTGTGTTTGAGTGCAA
GTTTGAAAGACGAAAA
■■Homology search results ■■ -
sp_hit_id Q9G2W8
Definition sp|Q9G2W8|NU5M_MYXGL NADH-ubiquinone oxidoreductase chain 5 OS=Myxine glutinosa
Align length 75
Score (bit) 30.8
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913037|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_F12.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9G2W8|NU5M_MYXGL NADH-ubiquinone oxidoreductase chain 5 OS=M...    31   2.6  
sp|Q5KVE4|PGK_GEOKA Phosphoglycerate kinase OS=Geobacillus kaust...    30   5.7  
sp|P18912|PGK_BACST Phosphoglycerate kinase OS=Bacillus stearoth...    30   5.7  
sp|Q9B6F0|CYB_THRSW Cytochrome b OS=Thryonomys swinderianus GN=M...    29   7.5  
sp|Q35066|CYB_MESPE Cytochrome b OS=Mesoplodon peruvianus GN=MT-...    29   7.5  
sp|Q5ZN98|CYB_ZAGBR Cytochrome b OS=Zaglossus bruijni GN=MT-CYB ...    29   9.8  
sp|O99342|CYB_KOBEL Cytochrome b OS=Kobus ellipsiprymnus GN=MT-C...    29   9.8  

>sp|Q9G2W8|NU5M_MYXGL NADH-ubiquinone oxidoreductase chain 5
           OS=Myxine glutinosa GN=MT-ND5 PE=3 SV=1
          Length = 601

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -2

Query: 426 SNLHSNTIT*VSTQKSDSFLGILVSKFF--IH*TCSSQITHLVHIEHGVSIIQSSHLIRP 253
           S L   T+T    Q   +FL +    FF  +   CS+ I H ++ E  +  + S HLI P
Sbjct: 307 SQLGLMTVTIGINQPQLAFLHMSTHAFFKALLFLCSASIIHTINNEQDIRKMGSLHLILP 366

Query: 252 KVLMHLDSCAVISSL 208
                  SC +ISSL
Sbjct: 367 ----FTSSCTLISSL 377


>sp|Q5KVE4|PGK_GEOKA Phosphoglycerate kinase OS=Geobacillus
           kaustophilus GN=pgk PE=3 SV=1
          Length = 394

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 300 IEHGVSIIQSSHLIRP--KVLMHLDSCAVISSLRKLLMR 190
           IEHG  +I +SHL RP  KV+  L   AV   L +LL R
Sbjct: 48  IEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLER 86


>sp|P18912|PGK_BACST Phosphoglycerate kinase OS=Bacillus
           stearothermophilus GN=pgk PE=1 SV=2
          Length = 394

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 300 IEHGVSIIQSSHLIRP--KVLMHLDSCAVISSLRKLLMR 190
           IEHG  +I +SHL RP  KV+  L   AV   L +LL R
Sbjct: 48  IEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLER 86


>sp|Q9B6F0|CYB_THRSW Cytochrome b OS=Thryonomys swinderianus
           GN=MT-CYB PE=3 SV=1
          Length = 379

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 235 RFLCSHFIPPETLDALTIVSSYFIH-MGILMYQNHSSSFIQISIHDSYLES*LGSFLSCH 59
           RF   HFI P  + ALT+V   F+H  G       +S   +I  H  Y    L   L   
Sbjct: 177 RFFALHFILPFIITALTMVHLLFLHETGSNNPTGLNSDCDKIPFHPYYSMKDLIGLLLLF 236

Query: 58  YFQLLL 41
           +F LLL
Sbjct: 237 FFLLLL 242


>sp|Q35066|CYB_MESPE Cytochrome b OS=Mesoplodon peruvianus GN=MT-CYB
           PE=3 SV=2
          Length = 379

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -1

Query: 235 RFLCSHFIPPETLDALTIVSSYFIH-MGILMYQNHSSSFIQISIHDSY-LES*LGSFLSC 62
           RF   HFI P  + ALTIV   F+H  G       SS   +I  H  Y ++  LG+ L  
Sbjct: 177 RFFAFHFILPFIILALTIVHLLFLHETGSNNPMGISSDMDKIPFHPYYTIKDILGALLLI 236

Query: 61  HYFQLL-LYANSSLSHP 14
               +L L+A   L  P
Sbjct: 237 MVLLMLTLFAPDLLGDP 253


>sp|Q5ZN98|CYB_ZAGBR Cytochrome b OS=Zaglossus bruijni GN=MT-CYB
           PE=3 SV=1
          Length = 379

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 235 RFLCSHFIPPETLDALTIVSSYFIH-MGILMYQNHSSSFIQISIHDSY-LES*LGSFLSC 62
           RF   HFI P  + ALTI+   F+H  G       +S   +I  H  Y ++  LG F++ 
Sbjct: 177 RFFAFHFILPFVVAALTIIHLLFLHETGSNNPSGLNSDSDKIPFHPYYSIKDLLGFFIAT 236

Query: 61  HYFQLLL 41
               LL+
Sbjct: 237 LVLMLLV 243


>sp|O99342|CYB_KOBEL Cytochrome b OS=Kobus ellipsiprymnus GN=MT-CYB
           PE=3 SV=1
          Length = 379

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -1

Query: 235 RFLCSHFIPPETLDALTIVSSYFIH-MGILMYQNHSSSFIQISIHDSY-LES*LGSFLSC 62
           RF   HFI P  + A+T+V   F+H  G       SS   +I  H  Y ++  LG+ L  
Sbjct: 177 RFFAFHFILPFIIAAITMVHLLFLHETGSNNPTGISSDMDKIPFHPYYTIKDILGALLLI 236

Query: 61  HYFQLL-LYANSSLSHP 14
               LL L+A   L  P
Sbjct: 237 LVLMLLVLFAPDLLGDP 253
tr_hit_id B6SVA0
Definition tr|B6SVA0|B6SVA0_MAIZE Protein binding protein OS=Zea mays
Align length 59
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913037|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_F12.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SVA0|B6SVA0_MAIZE Protein binding protein OS=Zea mays PE=2 ...    33   9.2  
tr|A7SD24|A7SD24_NEMVE Predicted protein OS=Nematostella vectens...    33   9.2  

>tr|B6SVA0|B6SVA0_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 634

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = -1

Query: 268 SSHPSKGLDAPRFLCSHFIPPETLDALTIVSSYFIHMG-----ILMYQNHSSSFIQISI 107
           S HPSKGL+A  +     IPP  L  +  ++   +  G       +Y+++ +S +++S+
Sbjct: 185 SHHPSKGLEAAVYRTPTLIPPRILPLMNDIAQQLVQAGNQQTCYKIYRDYRASALEVSL 243


>tr|A7SD24|A7SD24_NEMVE Predicted protein OS=Nematostella vectensis
            GN=v1g210379 PE=4 SV=1
          Length = 1030

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = -2

Query: 294  HGVSIIQSSHLIRPKVLMHLDS--CAVISSLRKLLMRSP*FRVISFIWES*CTRIIHHHS 121
            H +SI+     +R   +   D   CAV+ SL  L      F  + ++    C R+ +H  
Sbjct: 867  HFLSILMRKQPLRQCSIGAFDKSLCAVVPSLTSLDGNPLLFHNLRYLSHKFCPRVDNHRM 926

Query: 120  FKFQFMILILNRDWVHS*AVITFNCFCMQI 31
              F+F  + L + + +S  ++   CFC+ I
Sbjct: 927  RPFKFSGVYLFKPFSNSTRILGSQCFCIFI 956