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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912998
Clone id YMU001_000025_C03
Library
Length 291
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTGATAAATCTCAACTCACACCTGATGAAAAGATTGCCCAAAGAGTTTTAAGTGGTCAA
TTAAGCAAAGAAGAACAAGCATTGTATGCAAAGGAACATAGGTGTCTGCATTATCATGTA
GTCGGTCACATGAAAAGGGAATGTCCTAAGAAAGAATCTAACAAGGAAACCTCTACTGCG
TCAACTTCTGATGCTACCCATCAAGTGAATGCTATGAGCGTGGTAAAGCAAGAAGCTACG
CAGGAAGGGACTTACGAAGAGGATGAACTCATAAATGCTATGGACATGTTA
■■Homology search results ■■ -
sp_hit_id Q5PLM6
Definition sp|Q5PLM6|XYLA_SALPA Xylose isomerase OS=Salmonella paratyphi A
Align length 42
Score (bit) 33.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912998|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_C03.
         (291 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5PLM6|XYLA_SALPA Xylose isomerase OS=Salmonella paratyphi A ...    33   0.33 
sp|Q8ZL90|XYLA_SALTY Xylose isomerase OS=Salmonella typhimurium ...    32   0.74 
sp|Q7C637|XYLA_SALTI Xylose isomerase OS=Salmonella typhi GN=xyl...    32   0.74 
sp|A9MUV0|XYLA_SALPB Xylose isomerase OS=Salmonella paratyphi B ...    32   0.74 
sp|Q57IG0|XYLA_SALCH Xylose isomerase OS=Salmonella choleraesuis...    32   0.74 
sp|A4W566|XYLA_ENT38 Xylose isomerase OS=Enterobacter sp. (strai...    32   0.97 
sp|A1JT10|XYLA_YERE8 Xylose isomerase OS=Yersinia enterocolitica...    32   1.3  
sp|P51706|YO05_BPHP1 Uncharacterized 19.2 kDa protein in cox-rep...    31   1.7  
sp|A7MNI5|XYLA_ENTS8 Xylose isomerase OS=Enterobacter sakazakii ...    31   1.7  
sp|Q9TTC2|GAG_KORV Gag polyprotein OS=Koala retrovirus GN=gag PE...    31   2.2  
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    30   2.8  
sp|Q3YVV0|XYLA_SHISS Xylose isomerase OS=Shigella sonnei (strain...    29   6.3  
sp|P00944|XYLA_ECOLI Xylose isomerase OS=Escherichia coli (strai...    29   6.3  
sp|B1IZM7|XYLA_ECOLC Xylose isomerase OS=Escherichia coli (strai...    29   6.3  
sp|Q8FCE3|XYLA_ECOL6 Xylose isomerase OS=Escherichia coli O6 GN=...    29   6.3  
sp|Q0TBN7|XYLA_ECOL5 Xylose isomerase OS=Escherichia coli O6:K15...    29   6.3  
sp|A8A623|XYLA_ECOHS Xylose isomerase OS=Escherichia coli O9:H4 ...    29   6.3  
sp|Q7A9X4|XYLA_ECO57 Xylose isomerase OS=Escherichia coli O157:H...    29   6.3  
sp|A7ZTB2|XYLA_ECO24 Xylose isomerase OS=Escherichia coli O139:H...    29   6.3  
sp|Q6GNG3|TXD10_XENLA Protein disulfide-isomerase TXNDC10 OS=Xen...    29   6.3  

>sp|Q5PLM6|XYLA_SALPA Xylose isomerase OS=Salmonella paratyphi A
           GN=xylA PE=3 SV=1
          Length = 425

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 10  SQLTPDEKIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           +++  D ++ Q++L GQLS  + A YA++H     H  GH +
Sbjct: 371 ARMVEDGELGQQILKGQLSLGKLAQYAEQHHLAPVHQSGHQE 412


>sp|Q8ZL90|XYLA_SALTY Xylose isomerase OS=Salmonella typhimurium
           GN=xylA PE=3 SV=1
          Length = 440

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 31  KIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           ++ Q++L GQLS  E A YA++H     H  GH +
Sbjct: 393 ELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQE 427


>sp|Q7C637|XYLA_SALTI Xylose isomerase OS=Salmonella typhi GN=xylA
           PE=3 SV=1
          Length = 440

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 31  KIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           ++ Q++L GQLS  E A YA++H     H  GH +
Sbjct: 393 ELGQQILKGQLSLGELAQYAEQHHLAPVHQSGHQE 427


>sp|A9MUV0|XYLA_SALPB Xylose isomerase OS=Salmonella paratyphi B
           (strain ATCC BAA-1250 / SPB7) GN=xylA PE=3 SV=1
          Length = 440

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 31  KIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           ++ Q++L GQLS  E A YA++H     H  GH +
Sbjct: 393 ELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQE 427


>sp|Q57IG0|XYLA_SALCH Xylose isomerase OS=Salmonella choleraesuis
           GN=xylA PE=3 SV=1
          Length = 440

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 31  KIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           ++ Q++L GQLS  E A YA++H     H  GH +
Sbjct: 393 ELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQE 427


>sp|A4W566|XYLA_ENT38 Xylose isomerase OS=Enterobacter sp. (strain
           638) GN=xylA PE=3 SV=1
          Length = 440

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 25  DEKIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           + ++ Q++L GQLS  E A YA++H     H  GH +
Sbjct: 391 NSELGQQILKGQLSLAEIAKYAEQHSLAPSHQSGHQE 427


>sp|A1JT10|XYLA_YERE8 Xylose isomerase OS=Yersinia enterocolitica
           serotype O:8 / biotype 1B (strain 8081) GN=xylA PE=3
           SV=1
          Length = 439

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 34  IAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMK 135
           + Q++L G++S E+ A YA++H    +H  GH +
Sbjct: 394 LGQQILKGKMSLEDLASYAEQHNLNPHHQSGHQE 427


>sp|P51706|YO05_BPHP1 Uncharacterized 19.2 kDa protein in cox-rep
           intergenic region OS=Haemophilus phage HP1 PE=4 SV=1
          Length = 167

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = +1

Query: 4   DKSQLTPDEKIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTAS 183
           +K  LT +E+I +R    Q   E +    ++H+ L   +    +  CP+K++N + +T+ 
Sbjct: 15  EKHNLT-NEEIQERFAILQYQAEVERDTTQDHQQLSA-IFAKWRENCPRKQANNDETTSQ 72

Query: 184 TSDATHQV--NAMSVVKQEATQ 243
            + A HQ   +  + +KQ A +
Sbjct: 73  YTGAEHQAIRDLFASLKQSARE 94


>sp|A7MNI5|XYLA_ENTS8 Xylose isomerase OS=Enterobacter sakazakii
           (strain ATCC BAA-894) GN=xylA PE=3 SV=1
          Length = 440

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 31  KIAQRVLSGQLSKEEQALYAKEHRCLHYHVVGHMKR 138
           ++ Q++L GQ++  E A YA++H     H  GH ++
Sbjct: 393 ELGQQILKGQMTLAELAQYAEQHNLAPQHQSGHQEQ 428


>sp|Q9TTC2|GAG_KORV Gag polyprotein OS=Koala retrovirus GN=gag PE=3
           SV=3
          Length = 521

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 70  EEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSD 192
           ++Q  Y KE         GH  RECP+K++ +ET+  +  D
Sbjct: 489 KDQCAYCKER--------GHWARECPRKKNARETNVLTLGD 521
tr_hit_id A8NGE2
Definition tr|A8NGE2|A8NGE2_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 73
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912998|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_C03.
         (291 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NGE2|A8NGE2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    44   0.003
tr|A8P9K7|A8P9K7_COPC7 Putative uncharacterized protein OS=Copri...    42   0.015
tr|A8PJ41|A8PJ41_COPC7 Predicted protein OS=Coprinopsis cinerea ...    42   0.020
tr|A8PGB4|A8PGB4_COPC7 Putative uncharacterized protein OS=Copri...    42   0.020
tr|A8PJ02|A8PJ02_COPC7 Predicted protein OS=Coprinopsis cinerea ...    41   0.026
tr|A8PHN4|A8PHN4_COPC7 Predicted protein OS=Coprinopsis cinerea ...    40   0.044
tr|A8PBY7|A8PBY7_COPC7 Predicted protein OS=Coprinopsis cinerea ...    40   0.044
tr|A8PAJ6|A8PAJ6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    40   0.044
tr|A8NMX5|A8NMX5_COPC7 Putative uncharacterized protein OS=Copri...    40   0.044
tr|A8NAU6|A8NAU6_COPC7 Putative uncharacterized protein OS=Copri...    40   0.044
tr|A8N9M6|A8N9M6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    38   0.22 
tr|Q9LJS8|Q9LJS8_ARATH Gag-protease polyprotein-like OS=Arabidop...    37   0.37 
tr|A8N9Q1|A8N9Q1_COPC7 Predicted protein OS=Coprinopsis cinerea ...    37   0.37 
tr|Q9ZV83|Q9ZV83_ARATH Putative gag-protease polyprotein OS=Arab...    37   0.49 
tr|A5C3S7|A5C3S7_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A5C944|A5C944_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|Q9W1R3|Q9W1R3_DROME CG3493 OS=Drosophila melanogaster GN=CG34...    35   1.4  
tr|A8PHI3|A8PHI3_COPC7 Putative uncharacterized protein OS=Copri...    35   1.4  
tr|A8N564|A8N564_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   1.4  
tr|Q9LJS6|Q9LJS6_ARATH Copia retroelement pol polyprotein-like O...    35   1.9  
tr|A5C467|A5C467_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|B8MVM0|B8MVM0_9EURO Putative uncharacterized protein OS=Talar...    35   1.9  
tr|B8MJ89|B8MJ89_9EURO Putative uncharacterized protein OS=Talar...    35   1.9  
tr|B8LXS6|B8LXS6_9EURO Putative uncharacterized protein OS=Talar...    35   1.9  
tr|B7Q8N8|B7Q8N8_IXOSC Zinc-finger protein, putative OS=Ixodes s...    35   2.4  
tr|A8PB64|A8PB64_COPC7 Putative uncharacterized protein OS=Copri...    35   2.4  
tr|A8N4A0|A8N4A0_COPC7 Putative uncharacterized protein OS=Copri...    35   2.4  
tr|B7Q1Y8|B7Q1Y8_IXOSC Putative uncharacterized protein OS=Ixode...    34   3.2  
tr|B8MIJ7|B8MIJ7_9EURO Putative uncharacterized protein OS=Talar...    34   3.2  
tr|A8NMT4|A8NMT4_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   3.2  

>tr|A8NGE2|A8NGE2_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_13003 PE=4
           SV=1
          Length = 310

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSDATHQVNAMSVVKQEAT 240
           +S EE+    K   C +    GH+ +ECPKK  ++ TSTA+ +       A   +++   
Sbjct: 222 ISTEERTRMMKTGSCFYCREQGHIAKECPKKRKDRNTSTANDTKKKTPREAAKYIRRLLA 281

Query: 241 QEGTYEEDELINA 279
           Q    EE E++ A
Sbjct: 282 QYSPEEEAEILEA 294


>tr|A8P9K7|A8P9K7_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_12595 PE=4 SV=1
          Length = 1672

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTA--STSDATHQVNAMSVVKQE 234
           L++E++A   KE+RC H    GHM   CPK+ +   +S      S++  ++      + +
Sbjct: 693 LTEEKKAKLRKENRCFHCEETGHMASRCPKRNAVASSSRGPPGISNSNIEIELDMAHEDD 752

Query: 235 ATQEGTYEEDELIN 276
            T  G+  +DE+ N
Sbjct: 753 GTTSGSEGDDEVSN 766


>tr|A8PJ41|A8PJ41_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_13512 PE=4
           SV=1
          Length = 881

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTA--STSDATHQVNAMSVVKQE 234
           L++E++A   KE+RC H    GHM   CPK+ +   +S      S++  ++      + +
Sbjct: 226 LTEEKKAKLRKENRCFHCEETGHMASRCPKRNAVASSSRGPPGISNSNIEIELDMAHEDD 285

Query: 235 ATQEGTYEEDELIN 276
            T  G+  +DE+ N
Sbjct: 286 GTTSGSDGDDEVSN 299


>tr|A8PGB4|A8PGB4_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_10174 PE=4 SV=1
          Length = 2872

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTA--STSDATHQVNAMSVVKQE 234
           L++E++A   KE+RC H    GHM   CPK+ +   +S      S++  ++      + +
Sbjct: 667 LTEEKKAKLRKENRCFHCEETGHMASRCPKRNAVASSSRGPPGISNSNIEIELDMAHEDD 726

Query: 235 ATQEGTYEEDELIN 276
            T  G+  +DE+ N
Sbjct: 727 GTTSGSDGDDEVSN 740


>tr|A8PJ02|A8PJ02_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_13480 PE=4
           SV=1
          Length = 751

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTA--STSDATHQVNAMSVVKQE 234
           L++E++A   KE+RC H    GHM   CPK+ +   +S      S++  ++      + +
Sbjct: 673 LTEEKKAKLRKENRCFHCEETGHMASRCPKRNAVASSSRGPPGISNSNIEIELDMAHEDD 732

Query: 235 ATQEGTYEEDEL 270
            T  G+  +DEL
Sbjct: 733 GTTSGSDGDDEL 744


>tr|A8PHN4|A8PHN4_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_12680 PE=4
           SV=1
          Length = 324

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSDATHQVNAMSVVKQEAT 240
           +S +E+    K   C +    GH+ +ECPKK  ++ +ST++ +       A   +++   
Sbjct: 236 ISTDERTRMMKTGSCFYCREQGHIAKECPKKRKDRNSSTSNDTKKKTPREAAKYIRRLLA 295

Query: 241 QEGTYEEDELINA 279
           Q    EE E++ A
Sbjct: 296 QYSPEEEAEILEA 308


>tr|A8PBY7|A8PBY7_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10954 PE=4
           SV=1
          Length = 277

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSDATHQVNAMSVVKQEAT 240
           +S +E+    K   C +    GH+ +ECPKK  ++ +ST++ +       A   +++   
Sbjct: 189 ISTDERTRMMKTGSCFYCREQGHIAKECPKKRKDRNSSTSNDTKKKTPREAAKYIRRLLA 248

Query: 241 QEGTYEEDELINA 279
           Q    EE E++ A
Sbjct: 249 QYSPEEEAEILEA 261


>tr|A8PAJ6|A8PAJ6_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10379 PE=4
           SV=1
          Length = 324

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSDATHQVNAMSVVKQEAT 240
           +S +E+    K   C +    GH+ +ECPKK  ++ +ST++ +       A   +++   
Sbjct: 236 ISTDERTRMMKTGSCFYCREQGHIAKECPKKRKDRNSSTSNDTKKKTPREAAKYIRRLLA 295

Query: 241 QEGTYEEDELINA 279
           Q    EE E++ A
Sbjct: 296 QYSPEEEAEILEA 308


>tr|A8NMX5|A8NMX5_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_13491 PE=4 SV=1
          Length = 884

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSDATHQVNAMSVVKQEAT 240
           +S +E+    K   C +    GH+ +ECPKK  ++ +ST++ +       A   +++   
Sbjct: 236 ISTDERTRMMKTGSCFYCREQGHIAKECPKKRKDRNSSTSNDTKKKTPREATKYIRRLLA 295

Query: 241 QEGTYEEDELINA 279
           Q    EE E++ A
Sbjct: 296 QYSPEEEAEILEA 308


>tr|A8NAU6|A8NAU6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_06999 PE=4 SV=1
          Length = 825

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 61  LSKEEQALYAKEHRCLHYHVVGHMKRECPKKESNKETSTASTSDATHQVNAMSVVKQEAT 240
           +S +E+    K   C +    GH+ +ECPKK  ++ +ST++ +       A   +++   
Sbjct: 542 ISTDERTRMMKTGSCFYCREQGHIAKECPKKRKDRNSSTSNDTKKKTPREAAKYIRRLLA 601

Query: 241 QEGTYEEDELINA 279
           Q    EE E++ A
Sbjct: 602 QYSPEEEAEILEA 614