| BP912834 |
| Clone id |
YMU001_000023_D08 |
| Library |
YMU01 |
| Length |
565 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000023_D08. |
| Accession |
BP912834 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
TGTTAAAAGAATAAATTGAATTTTGATTGAGAACTGCTTTCAACACCCTTCCAAAACAGA
ATTGTCTTATTGTGTACACTACAGTTACATAGTACATGGGTAGTAATAAGCCACCACCAC
TCAATAAACCAGCCAACTCAGCAGTTTGACCACTGAAACTCAATCTCAATGGTTCTTGCT
GTGCCATCTCTATTTGTATCTGGAGCAAGAGTATATTGTCCACTGACTTTGCCGAGCAGC
ACGACCCGATCTATTTGTATGGTCACTTTTCCTAGAGAACCCTTGCCAAAAGTATTTTTG
CTCTTGCATGATATGCGAAGTTTCTGGCCTTTGGGTGGGGCATCAAAAGCCCATGCAAAG
CTCTGATTCCATTCGGGAGAGCTGCTACTTGAGACCACCTTCGTTTGCCGTGGGGCCCCA
TTCCCAAGTGTTAGCTTGCAGAAAGCATTTGTACTACCCACCGACTGCTTCAAATTAACA
CCACGTTTGATCGTGACCACAAGATTTCCAGGCAAGCATTGCAATAATCCCTCCGCCTTT
TCTTGAAAAGGTTCAGGGCCTGATC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O75923 |
| Definition |
sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens |
| Align length |
107 |
| Score (bit) |
45.8 |
| E-value |
0.0001 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912834|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D08.
(565 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1 46 1e-04
sp|A6QQP7|DYSF_BOVIN Dysferlin OS=Bos taurus GN=DYSF PE=2 SV=1 45 3e-04
sp|Q9ESD7|DYSF_MOUSE Dysferlin OS=Mus musculus GN=Dysf PE=1 SV=3 42 0.002
sp|Q54WH2|FORA_DICDI Formin-A OS=Dictyostelium discoideum GN=for... 41 0.004
sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus mus... 38 0.039
sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=... 37 0.051
sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=... 37 0.051
sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sa... 37 0.067
sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicu... 37 0.067
sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=... 36 0.11
sp|Q68DD2|PA24F_HUMAN Cytosolic phospholipase A2 zeta OS=Homo sa... 36 0.11
sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-ac... 36 0.11
sp|P48231|TCB2_YEAST Tricalbin-2 OS=Saccharomyces cerevisiae GN=... 35 0.33
sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus G... 35 0.33
sp|Q12466|TCB1_YEAST Tricalbin-1 OS=Saccharomyces cerevisiae GN=... 34 0.43
sp|Q86KB1|ADCB_DICDI Arrestin domain-containing protein B OS=Dic... 34 0.43
sp|O23078|PLDB2_ARATH Phospholipase D beta 2 OS=Arabidopsis thal... 34 0.57
sp|Q50L41|PA24F_MOUSE Cytosolic phospholipase A2 zeta OS=Mus mus... 34 0.57
sp|Q3MJ16|PA24E_HUMAN Cytosolic phospholipase A2 epsilon OS=Homo... 34 0.57
sp|P05696|KPCA_RAT Protein kinase C alpha type OS=Rattus norvegi... 33 0.97
sp|P10102|KPCA_RABIT Protein kinase C alpha type OS=Oryctolagus ... 33 0.97
sp|P20444|KPCA_MOUSE Protein kinase C alpha type OS=Mus musculus... 33 0.97
sp|P17252|KPCA_HUMAN Protein kinase C alpha type OS=Homo sapiens... 33 0.97
sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii G... 33 0.97
sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laev... 33 0.97
sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laev... 33 1.3
sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus... 32 1.7
sp|P68403|KPCB_RAT Protein kinase C beta type OS=Rattus norvegic... 32 1.7
sp|P05772|KPCB_RABIT Protein kinase C beta type OS=Oryctolagus c... 32 1.7
sp|P68404|KPCB_MOUSE Protein kinase C beta type OS=Mus musculus ... 32 1.7
>sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1
Length = 2080
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = -3
Query: 452 TNAFCKLTLGNGAPRQTKVVSSSSSPEWNQSFAWAFDAPP--KGQKLRISCKSKNTFGKG 279
++A+C G ++TKV+ +S +P WN+ F W P +G +L + K T G+
Sbjct: 20 SDAYCSAVFA-GVKKRTKVIKNSVNPVWNEGFEWDLKGIPLDQGSELHVVVKDHETMGRN 78
Query: 278 S-LGKVTIQIDRVVLLGKVSGQYTLAP--DTNRDGTARTIEIEFQWS 147
LG+ + + V+ +S + AP DT + T ++ ++ ++
Sbjct: 79 RFLGEAKVPLREVLATPSLSASFN-APLLDTKKQPTGASLVLQVSYT 124
>sp|A6QQP7|DYSF_BOVIN Dysferlin OS=Bos taurus GN=DYSF PE=2 SV=1
Length = 2107
Score = 44.7 bits (104), Expect = 3e-04
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = -3
Query: 452 TNAFCKLTLGNGAPRQTKVVSSSSSPEWNQSFAWAFDAPP--KGQKLRISCKSKNTFGKG 279
++A+C G ++TKV+ ++ +P WN+ F W P +G +L + K T G+
Sbjct: 20 SDAYCSAVFA-GVKKRTKVIKNNVNPVWNEGFEWDLKGIPLDQGSELLVVVKDHETMGRN 78
Query: 278 S-LGKVTIQIDRVVLLGKVSGQYTLAP--DTNRDGTARTIEIEFQWS 147
LG+ I + V+ +S + AP DT + T ++ ++ ++
Sbjct: 79 RFLGEANIPLREVLATPSLSASFN-APLLDTKKQPTGASLVLQVSYT 124
>sp|Q9ESD7|DYSF_MOUSE Dysferlin OS=Mus musculus GN=Dysf PE=1 SV=3
Length = 2090
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Frame = -3
Query: 452 TNAFCKLTLGNGAPRQTKVVSSSSSPEWNQSFAWAFDAPPKGQ--KLRISCKSKNTFGKG 279
++A+C G ++TKV+ +S +P WN+ F W P Q +L + K T G+
Sbjct: 20 SDAYCSAVFA-GVKKRTKVIKNSVNPVWNEGFEWDLKGIPLDQSSELLVVVKDHETMGRN 78
Query: 278 S-LGKVTIQIDRVVLLGKVSGQYTLAP--DTNRDGTARTIEIEFQWS 147
LG+ I + V+ +S + AP D + T ++ ++ ++
Sbjct: 79 RFLGEAKIPLQEVLATPSLSASFN-APLLDAKQQPTGASLVLQVSYT 124
>sp|Q54WH2|FORA_DICDI Formin-A OS=Dictyostelium discoideum GN=forA
PE=1 SV=1
Length = 1218
Score = 41.2 bits (95), Expect = 0.004
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = -3
Query: 491 IKRGVNLKQSVGST-NAFCKLTLGNGAPRQTKVVSSSSSPEWNQSFAWAFDAPPKGQK-- 321
IK+G N+ S GS + + ++T G ++TKV++ S+ PEWN S QK
Sbjct: 12 IKKGKNIVGSDGSVCSPYLRVTWGGKKQQKTKVITKSAEPEWNFSCLLEIKKEKNPQKPG 71
Query: 320 LRISCKSKNTFGKGSLGKVTIQIDRVVLLGK 228
L F + + T Q+ ++LG+
Sbjct: 72 LEFELIEHKQFSEKEISSTTYQLPESLILGE 102
>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus
musculus GN=Rasa4 PE=2 SV=1
Length = 802
Score = 37.7 bits (86), Expect = 0.039
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Frame = -3
Query: 470 KQSVGSTNAFCKLTLGNGAPRQTKVVSSSSSPEWNQSFAWAFDAPPKGQKLRISCK---- 303
K G+++ F ++ NG ++T VV S P WN++F + + KG + +
Sbjct: 148 KDRNGASDPFVRVHY-NGRTQETSVVKKSCYPRWNETFDFELE---KGASEALLVEAWDW 203
Query: 302 ---SKNTFGKGSLGKVTIQIDRVVLLGKVSGQYTLAPDTNR 189
S+N F LGKV + + R+ + G + L PD ++
Sbjct: 204 DLVSRNDF----LGKVAVNVQRLCSAQQEEGWFRLQPDQSK 240
>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1
SV=1
Length = 1714
Score = 37.4 bits (85), Expect = 0.051
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = -3
Query: 509 GNLVVTIKRGVNLK--QSVGSTNAFCKLTLGNGAPRQTKVVSSSSSPEWNQS 360
G L+V + G+ LK +S G +N +C++T+G+ TK + + +P+WN +
Sbjct: 1589 GRLMVNVVEGIELKPCRSHGKSNPYCEVTMGSQC-HITKTIQDTLNPKWNSN 1639
>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1
SV=3
Length = 1721
Score = 37.4 bits (85), Expect = 0.051
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = -3
Query: 509 GNLVVTIKRGVNLK--QSVGSTNAFCKLTLGNGAPRQTKVVSSSSSPEWNQS 360
G L+V + G+ LK +S G +N +C++T+G+ TK + + +P+WN +
Sbjct: 1596 GRLMVNVVEGIELKPCRSHGKSNPYCEVTMGSQC-HITKTIQDTLNPKWNSN 1646
>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo
sapiens GN=RASA4 PE=2 SV=2
Length = 803
Score = 37.0 bits (84), Expect = 0.067
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Frame = -3
Query: 470 KQSVGSTNAFCKLTLGNGAPRQTKVVSSSSSPEWNQSF---------------AWAFDAP 336
K G+++ F ++ G R+T +V S P WN++F AW +D
Sbjct: 148 KDRNGTSDPFVRVRY-KGRTRETSIVKKSCYPRWNETFEFELQEGAMEALCVEAWDWD-- 204
Query: 335 PKGQKLRISCKSKNTFGKGSLGKVTIQIDRVVLLGKVSGQYTLAPDTNR-----DGTART 171
S+N F LGKV I + R+ ++ + G + L PD ++ +G +
Sbjct: 205 ---------LVSRNDF----LGKVVIDVQRLRVVQQEEGWFRLQPDQSKSRRHDEGNLGS 251
Query: 170 IEIE 159
+++E
Sbjct: 252 LQLE 255
>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus
GN=Fam62a PE=2 SV=1
Length = 1088
Score = 37.0 bits (84), Expect = 0.067
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = -3
Query: 419 GAPRQTKVVSSSSSPEWNQSFAWAFDAPPKG---QKLRISCKSKNTF---GKGSLGKVTI 258
G R+T + +PE+N+ F W D P G +KL +S KS ++F + LGKV +
Sbjct: 1005 GTKRKTSQKKRTLNPEFNERFEW--DLPLDGTLRRKLDVSVKSNSSFMSRERELLGKVQL 1062
Query: 257 QIDRVVLLGKVSGQYTLAPDTNRDGT 180
+ + L + Y L D ++ G+
Sbjct: 1063 DLAEIDLSQGAAQWYDLIDDRDKGGS 1088
Score = 31.6 bits (70), Expect = 2.8
Identities = 18/78 (23%), Positives = 41/78 (52%)
Frame = -3
Query: 473 LKQSVGSTNAFCKLTLGNGAPRQTKVVSSSSSPEWNQSFAWAFDAPPKGQKLRISCKSKN 294
L++ + + LT+G + +TK VS +S+P W +S ++ P + L + + +
Sbjct: 801 LRKGTKPPSPYAILTVGETS-HKTKTVSQTSAPIWEESASFLI-RKPHAESLELQVRGE- 857
Query: 293 TFGKGSLGKVTIQIDRVV 240
G G+LG +++ + ++
Sbjct: 858 --GTGTLGSISLPLSELL 873
>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1
SV=3
Length = 5183
Score = 36.2 bits (82), Expect = 0.11
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Frame = -3
Query: 509 GNLVVTIKRGVNL--KQSVGSTNAFCKLTL--GNGAP--RQTKVVSSSSSPEWNQSFAWA 348
GNL++ I + NL + + G ++ F K+ L G GA R+TK V S +PEWNQ+ +
Sbjct: 4578 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGAEYKRRTKHVQKSLNPEWNQTVIYK 4637
Query: 347 FDAPP--KGQKLRISCKSKNTFGKGS-LGKVTIQIDRVVLLGKVSGQYTLAPDT 195
+ K + L ++ + F LG+V I + L Y L T
Sbjct: 4638 SISMEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 4691
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RP92 |
| Definition |
tr|A9RP92|A9RP92_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
139 |
| Score (bit) |
231.0 |
| E-value |
2.0e-59 |
| Report |
|