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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912789
Clone id YMU001_000022_H05
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTCATAGGAGCAATAAAATTAAGGGGTATCAAATGACAGGTTGGTA
CATTTTTCCCTTGCATGATGACGGGCGAAGTGTATGATGGCCTTCCTATTCGAAGGCCAA
ATAAGGGAATTCCCTTTCCCTAGGAAGGACAAGGGCACCCTTCAATTTCTAGGCCTGGTC
TCAAACAGCCCTACGCTCAGCTTCGCTGATGAAACATTCGTCCAGTACAATGTAGTCGAA
AGCTTAACACAACAGTATCATAGAAGATACCAACTCCAAGTTTCACCAGGGCCTAGAACA
ACCCTATGTTGTGCTTCGCTAATGAGCCATTCCTCCAGTACAACATAGTTGAAAGCTAAC
AAAACATTTTCTTTGATATTTGCAAAAGCTACATACTTCTCCGTTCAAGAAGTCTCAAAA
GAGTCAACCTTTGATTCTAAATATACACGGTCCGAACATCATTTGGTCCAAATACAGCTC
CACATGCAGGGCATTTGCGGTGTCTTGAGTCTAGAGACTTCTGAACG
■■Homology search results ■■ -
sp_hit_id Q9C895
Definition sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
Align length 27
Score (bit) 45.8
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912789|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_H05.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS...    46   1e-04
sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS...    43   0.001
sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS...    43   0.001
sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS...    43   0.001
sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS...    42   0.001
sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS...    42   0.001
sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus m...    38   0.024
sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo ...    38   0.024
sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallu...    38   0.024
sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos t...    38   0.024
sp|Q5KBI0|BRE1_CRYNE E3 ubiquitin-protein ligase BRE1 OS=Cryptoc...    37   0.054
sp|O74563|BRL2_SCHPO E3 ubiquitin-protein ligase brl2 OS=Schizos...    35   0.16 
sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus ...    35   0.27 
sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus m...    35   0.27 
sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo...    34   0.35 
sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macac...    34   0.35 
sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo ...    34   0.35 
sp|P34537|BRE1_CAEEL E3 ubiquitin-protein ligase bre-1 OS=Caenor...    34   0.45 
sp|Q60YN5|BRE1_CAEBR E3 ubiquitin-protein ligase bre-1 OS=Caenor...    34   0.45 
sp|Q6CF78|BRE1_YARLI E3 ubiquitin-protein ligase BRE1 OS=Yarrowi...    33   0.59 
sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosoph...    33   1.0  
sp|Q86KL1|BRE1_DICDI Probable E3 ubiquitin-protein ligase bre1 O...    32   1.3  
sp|Q07457|BRE1_YEAST E3 ubiquitin-protein ligase BRE1 OS=Sacchar...    32   2.2  
sp|Q7SXZ1|PIGB_DANRE GPI mannosyltransferase 3 OS=Danio rerio GN...    31   2.9  
sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergi...    31   2.9  
sp|Q4WDD7|BRE1_ASPFU E3 ubiquitin-protein ligase bre1 OS=Aspergi...    31   2.9  
sp|Q4P3X7|BRE1_USTMA E3 ubiquitin-protein ligase BRE1 OS=Ustilag...    30   6.5  
sp|Q09452|YQ23_CAEEL Putative zinc finger protein C09F5.3 OS=Cae...    30   8.5  
sp|Q26627|SUREJ_STRPU Sperm receptor for egg jelly OS=Strongyloc...    30   8.5  
sp|Q4VXA5|KHDC1_HUMAN KH homology domain-containing protein 1 OS...    30   8.5  

>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2
           OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=1
          Length = 899

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTV 430
           +Q+SL+ RHRKCP CG  FG NDVR V
Sbjct: 871 IQRSLEIRHRKCPGCGTAFGQNDVRLV 897


>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2
           OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1
          Length = 844

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCP CG  FG +DVR V I
Sbjct: 816 IQRNLEIRHRKCPGCGTPFGQSDVREVKI 844


>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2
           OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2
          Length = 844

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCP CG  FG +DVR V I
Sbjct: 816 IQRNLEIRHRKCPGCGTPFGQSDVREVKI 844


>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1
           OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1
          Length = 878

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           VQK   +R +KCP C A FGPND++ +YI
Sbjct: 850 VQKLTGTRQKKCPTCSASFGPNDIKPIYI 878


>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1
           OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3
          Length = 884

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +QKSL +R R+CP+C   FG NDV+ +YI
Sbjct: 856 IQKSLGNRQRRCPSCSLSFGANDVKPIYI 884


>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1
           OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2
          Length = 884

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +QKSL +R R+CP+C   FG NDV+ +YI
Sbjct: 856 IQKSLGNRQRRCPSCSLSFGANDVKPIYI 884


>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus
            musculus GN=Rnf20 PE=2 SV=2
          Length = 973

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 510  VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
            V+   D+R RKCP C A FG ND   +YI
Sbjct: 944  VKTRYDTRQRKCPKCNAAFGANDFHRIYI 972


>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo
            sapiens GN=RNF20 PE=1 SV=2
          Length = 975

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 510  VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
            V+   D+R RKCP C A FG ND   +YI
Sbjct: 946  VKTRYDTRQRKCPKCNAAFGANDFHRIYI 974


>sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus
            gallus GN=RNF20 PE=2 SV=1
          Length = 984

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 510  VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
            V+   D+R RKCP C A FG ND   +YI
Sbjct: 955  VKTRYDTRQRKCPKCNAAFGANDFHRIYI 983


>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus
            GN=RNF20 PE=2 SV=1
          Length = 975

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 510  VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
            V+   D+R RKCP C A FG ND   +YI
Sbjct: 946  VKTRYDTRQRKCPKCNAAFGANDFHRIYI 974
tr_hit_id A9TJ88
Definition tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 29
Score (bit) 55.5
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912789|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_H05.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella paten...    50   8e-05
tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella paten...    48   2e-04
tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomit...    48   3e-04
tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome ...    47   7e-04
tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genom...    46   0.001
tr|B3H5S6|B3H5S6_ARATH Uncharacterized protein At1g55255.2 OS=Ar...    46   0.001
tr|B6SHA4|B6SHA4_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.010
tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequen...    43   0.010
tr|B8Q8A6|B8Q8A6_ORYSI SKIP interacting protein 20 OS=Oryza sati...    42   0.013
tr|B8ASX7|B8ASX7_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.013
tr|Q4RZA9|Q4RZA9_TETNG Chromosome 1 SCAF14944, whole genome shot...    38   0.25 
tr|B5BV15|B5BV15_DRONO Ring finger protein 20 (Fragment) OS=Drom...    38   0.25 
tr|A9JS25|A9JS25_XENLA LOC100127292 protein OS=Xenopus laevis GN...    38   0.25 
tr|A2AIR3|A2AIR3_MOUSE Ring finger protein 20 OS=Mus musculus GN...    38   0.25 
tr|A7APS2|A7APS2_BABBO Putative uncharacterized protein OS=Babes...    38   0.25 
tr|A7MCT5|A7MCT5_HUMAN Ring finger protein 20 OS=Homo sapiens GN...    38   0.25 
tr|Q7T178|Q7T178_DANRE Novel protein (Zgc:171713) (Fragment) OS=...    37   0.43 
tr|Q4S4Q4|Q4S4Q4_TETNG Chromosome 2 SCAF14738, whole genome shot...    36   1.3  
tr|Q24DT4|Q24DT4_TETTH Zinc finger protein OS=Tetrahymena thermo...    36   1.3  
tr|B6PAW8|B6PAW8_BRAFL Putative uncharacterized protein OS=Branc...    36   1.3  
tr|B6NEH4|B6NEH4_BRAFL Putative uncharacterized protein (Fragmen...    36   1.3  
tr|Q0TVL4|Q0TVL4_PHANO Putative uncharacterized protein OS=Phaeo...    36   1.3  
tr|B2VVV7|B2VVV7_PYRTR E3 ubiquitin-protein ligase bre1 OS=Pyren...    36   1.3  
tr|Q5C1Y1|Q5C1Y1_SCHJA SJCHGC05730 protein (Fragment) OS=Schisto...    35   1.6  
tr|A9BKD0|A9BKD0_9CRYP Putative uncharacterized protein OS=Crypt...    35   1.6  
tr|A8QGA4|A8QGA4_BRUMA RING finger protein 20, putative (Fragmen...    35   1.6  
tr|A4RG72|A4RG72_MAGGR Putative uncharacterized protein OS=Magna...    35   1.6  

>tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222810 PE=4 SV=1
          Length = 844

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 23/29 (79%), Positives = 25/29 (86%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q+SLDSRHRKCP CG  FG NDVRTVYI
Sbjct: 816 IQRSLDSRHRKCPGCGVPFGQNDVRTVYI 844


>tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144430 PE=4 SV=1
          Length = 884

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 19/29 (65%), Positives = 25/29 (86%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+S+HRKCP CG  FG NDVR+VYI
Sbjct: 856 IQRNLESKHRKCPGCGIPFGQNDVRSVYI 884


>tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115788 PE=4 SV=1
          Length = 884

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCP CG  FG NDVR VYI
Sbjct: 856 IQRNLELRHRKCPGCGIPFGQNDVRVVYI 884


>tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152947 PE=4 SV=1
          Length = 852

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCPACG  FG +DVR VYI
Sbjct: 824 IQRNLELRHRKCPACGIPFGQSDVRNVYI 852


>tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208452 PE=4 SV=1
          Length = 846

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCPACG  FG +DVRTV I
Sbjct: 818 IQRNLEIRHRKCPACGIAFGQSDVRTVSI 846


>tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00024749001
            PE=4 SV=1
          Length = 1652

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -2

Query: 510  VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
            +Q++L+ RHRKCPACG  FG NDVR V I
Sbjct: 1624 IQRNLEIRHRKCPACGTAFGQNDVRFVKI 1652


>tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019139001
           PE=4 SV=1
          Length = 878

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           VQ+ +++R+RKCP C A FGPNDV+ VYI
Sbjct: 850 VQRIIEARNRKCPVCSASFGPNDVKPVYI 878


>tr|B3H5S6|B3H5S6_ARATH Uncharacterized protein At1g55255.2
           OS=Arabidopsis thaliana GN=At1g55255 PE=4 SV=1
          Length = 422

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTV 430
           +Q+SL+ RHRKCP CG  FG NDVR V
Sbjct: 394 IQRSLEIRHRKCPGCGTAFGQNDVRLV 420


>tr|B6SHA4|B6SHA4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 232

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCP CG  FG NDVR V I
Sbjct: 204 IQRNLEIRHRKCPGCGTPFGQNDVREVKI 232


>tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34687 PE=4 SV=1
          Length = 844

 Score = 42.7 bits (99), Expect = 0.010
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424
           +Q++L+ RHRKCP CG  FG +DVR V I
Sbjct: 816 IQRNLEIRHRKCPGCGTPFGQSDVREVKI 844