BP912712
Clone id YMU001_000022_A07
Library
Length 476
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTCTCACGTGTGTGGCTTCAGATCTTTGGCTTGGGCTGTCCAAGTCTATTTCACAGAAGC
AATAGTCAAGGAAGCCAAAATAGCAGGACATGTGGTGGTGTCGTGGTCTATAATCCGATC
CCACAAGTCGCCGTAAGAGTAATCATGATCAATATCTTCCAAACTATAAGGTTGGAACCG
TCCATCTTCTCCTAGGGGTGAAAGATCAGCATTTAGTGTCAAAAATCGACATACTTGCAA
GGAAAATTTAAGTACACCAAAAAATCTCAAAAGTCCCGCAAAGTAGAAAGAATAGGAATG
AAGAAGATCTGGAAGCTGTGCTTGATGAAGTACCAAAAATACGATATGAGGAGGAGAAGC
GATCAGAATCGAGTCATAGGATCCAAGAAATTGCTGGAAGACCAAGGGTATCTGTCCAAA
TGTCAACACAATAGGTGGAGGCTATAGCACAAGCTGATGCCAAGTTCCACTAAAGA
■■Homology search results ■■ -
sp_hit_id O75330
Definition sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Homo sapiens
Align length 51
Score (bit) 30.4
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912712|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_A07.
(476 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Ho... 30 4.2
sp|Q6AYE4|VATC2_RAT V-type proton ATPase subunit C 2 OS=Rattus n... 30 5.5
sp|Q92SW4|IF2_RHIME Translation initiation factor IF-2 OS=Rhizob... 30 5.5
sp|Q99L60|VATC2_MOUSE V-type proton ATPase subunit C 2 OS=Mus mu... 30 7.2
sp|B1ATG9|U632A_MOUSE UPF0632 protein A OS=Mus musculus PE=3 SV=1 30 7.2
sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransfera... 30 7.2
sp|Q9NX58|LYAR_HUMAN Cell growth-regulating nucleolar protein OS... 30 7.2
sp|P59242|CING_MOUSE Cingulin OS=Mus musculus GN=Cgn PE=1 SV=1 30 7.2
sp|Q8NEY4|VATC2_HUMAN V-type proton ATPase subunit C 2 OS=Homo s... 29 9.4
sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen... 29 9.4
sp|Q9HAU5|RENT2_HUMAN Regulator of nonsense transcripts 2 OS=Hom... 29 9.4
sp|A6UF29|IF2_SINMW Translation initiation factor IF-2 OS=Sinorh... 29 9.4
sp|Q9H3P7|GCP60_HUMAN Golgi resident protein GCP60 OS=Homo sapie... 29 9.4
sp|Q03MX6|CINA_STRTD Putative competence-damage inducible protei... 29 9.4
sp|Q5M6H3|CINA_STRT2 Putative competence-damage inducible protei... 29 9.4
sp|Q5M1Y3|CINA_STRT1 Putative competence-damage inducible protei... 29 9.4

>sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Homo
sapiens GN=HMMR PE=1 SV=2
Length = 724

Score = 30.4 bits (67), Expect = 4.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +3

Query: 252 VHQKISKVPQS---RKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIA 395
+HQK+ + KN EE+L+ LDE+ K++ +EE+ +++E A
Sbjct: 356 LHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEA 406


>sp|Q6AYE4|VATC2_RAT V-type proton ATPase subunit C 2 OS=Rattus
norvegicus GN=Atp6v1c2 PE=2 SV=1
Length = 425

Score = 30.0 bits (66), Expect = 5.5
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +3

Query: 123 TSRRKSNHDQY--LPNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRK 290
TS+ +H+ +P++KVGT+ L+G+ D+ + K+D A + + Q + +V + K
Sbjct: 26 TSKSNLSHNTKFAIPDFKVGTLDSLVGLSDE--LGKLDTFAESLIKRMAQSVVEVMEDSK 83

Query: 291 NRNEEDLEA 317
+ E+L A
Sbjct: 84 GKVHENLLA 92


>sp|Q92SW4|IF2_RHIME Translation initiation factor IF-2 OS=Rhizobium
meliloti GN=infB PE=3 SV=1
Length = 889

Score = 30.0 bits (66), Expect = 5.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3

Query: 300 EEDLEAVLDEVPKIRYEEEK----RSESSHRIQEIAGRPRVSVQMSTQ*VEAIAQA 455
EE DEV + R EEE+ + E++ R E A RP V + + + VEA + A
Sbjct: 132 EEAKRRAEDEVRRRREEEERLAREKEEAARRAAEEAARPPVEAEKTEEKVEAASPA 187


>sp|Q99L60|VATC2_MOUSE V-type proton ATPase subunit C 2 OS=Mus
musculus GN=Atp6v1c2 PE=2 SV=1
Length = 427

Score = 29.6 bits (65), Expect = 7.2
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3

Query: 123 TSRRKSNHDQY--LPNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRK 290
TS+ +H+ +P++KVGT+ L+G+ D+ + K+D A + + Q + +V + K
Sbjct: 26 TSKSNLSHNTKFAIPDFKVGTLDSLVGLSDE--LGKLDTFAESLIKRMAQSVVEVMEDSK 83

Query: 291 NRNEEDLEA 317
+ E L A
Sbjct: 84 GKAHETLLA 92


>sp|B1ATG9|U632A_MOUSE UPF0632 protein A OS=Mus musculus PE=3 SV=1
Length = 517

Score = 29.6 bits (65), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3

Query: 171 PYSLEDIDHDYSYGDLWDRIIDHDTTTCP 85
PY+ ED+ Y+ GDL I +HDT+ P
Sbjct: 244 PYTTEDLIKHYNCGDLNAVIFNHDTSQLP 272


>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex,
mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=2
SV=2
Length = 635

Score = 29.6 bits (65), Expect = 7.2
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +3

Query: 195 GVKDQHLVSKIDILARKI*VHQKISKVPQSRKNRNEEDLEAVLDEVPKIRYEEEKRSESS 374
G K + I I+ K + I ++ K ++ V +E PK + E K+S +
Sbjct: 146 GTKGIEINKPIAIIVSK---KEDIESAVKNYKPSSQASSTPVQEEAPKPKQEAPKKSTKT 202

Query: 375 HRIQEIAGRPRVSVQMST 428
+ ++ G P +S M T
Sbjct: 203 YPAHKVVGMPALSPSMET 220


>sp|Q9NX58|LYAR_HUMAN Cell growth-regulating nucleolar protein
OS=Homo sapiens GN=LYAR PE=1 SV=2
Length = 379

Score = 29.6 bits (65), Expect = 7.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3

Query: 255 HQKISK--VPQSRKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSV 416
HQ+ S+ P+ RK E DLEA +EVP+ KRS+ + ++ A V
Sbjct: 211 HQENSRNQKPKKRKKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEAHV 266


>sp|P59242|CING_MOUSE Cingulin OS=Mus musculus GN=Cgn PE=1 SV=1
Length = 1191

Score = 29.6 bits (65), Expect = 7.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Frame = +3

Query: 279 QSRKNRNEEDLEAVLDEVPKIRY-----------EEEKRSESSHRIQEIAGRPRVSVQMS 425
Q+ R E+L+ LDE K R + E+++E HR+QE+ R + VQ S
Sbjct: 349 QAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQS 408

Query: 426 TQ 431
++
Sbjct: 409 SK 410


>sp|Q8NEY4|VATC2_HUMAN V-type proton ATPase subunit C 2 OS=Homo
sapiens GN=ATP6V1C2 PE=2 SV=2
Length = 427

Score = 29.3 bits (64), Expect = 9.4
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3

Query: 156 LPNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRKNRNEEDLEA 317
+P++KVGT+ L+G+ D+ + K+D A + + Q + +V + K + +E L A
Sbjct: 39 IPDFKVGTLDSLVGLSDE--LGKLDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLA 92


>sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen 8
homolog OS=Mus musculus GN=Sdccag8 PE=1 SV=1
Length = 717

Score = 29.3 bits (64), Expect = 9.4
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +3

Query: 261 KISKVPQSRKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSVQMSTQ*VE 440
++ K + K ++ +DLE + E+ K+R E + + + Q+ A R R Q + E
Sbjct: 474 EVEKEHREYKAKSHKDLEMKVQEIEKLRLELSESEQHVEQEQQKAARAR---QECLRVTE 530

Query: 441 AIAQADAKFH 470
+ +A+ + H
Sbjct: 531 LLGEAERQLH 540


tr_hit_id Q810R2
Definition tr|Q810R2|Q810R2_MOUSE Upf2 protein (Fragment) OS=Mus musculus
Align length 82
Score (bit) 37.4
E-value 0.38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912712|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_A07.
(476 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q810R2|Q810R2_MOUSE Upf2 protein (Fragment) OS=Mus musculus G... 37 0.38
tr|A2AT37|A2AT37_MOUSE UPF2 regulator of nonsense transcripts ho... 37 0.38
tr|B6C868|B6C868_9ROSA Sucrose non-fermenting-1-related protein ... 34 3.2
tr|Q5C182|Q5C182_SCHJA SJCHGC08031 protein (Fragment) OS=Schisto... 34 3.2
tr|Q869Q5|Q869Q5_DICDI Similar to Arabidopsis thaliana (Mouse-ea... 33 7.1
tr|Q555H8|Q555H8_DICDI Putative uncharacterized protein OS=Dicty... 33 7.1
tr|B6LBM0|B6LBM0_BRAFL Putative uncharacterized protein OS=Branc... 33 9.2
tr|B0XCL0|B0XCL0_CULQU Myosin I OS=Culex quinquefasciatus GN=Cpi... 33 9.2
tr|B6Q942|B6Q942_PENMA ATP-dependent RNA helicase Mrh4, putative... 33 9.2
tr|A7TF71|A7TF71_VANPO Putative uncharacterized protein OS=Vande... 33 9.2

>tr|Q810R2|Q810R2_MOUSE Upf2 protein (Fragment) OS=Mus musculus
GN=Upf2 PE=2 SV=1
Length = 186

Score = 37.4 bits (85), Expect = 0.38
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +3

Query: 243 KI*VHQKISKVPQSRKNRNEEDLEAVLD------EVPKIRYEEE--KRSESSHRIQEIAG 398
K+ +++SKVP+ +K R EED D E K++ EEE K+ E + QE
Sbjct: 42 KVTAKKEVSKVPEDKKKRLEEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKQEEEE 101

Query: 399 RPRVSVQMSTQ*VEAIAQADAK 464
R + Q Q EA AQ K
Sbjct: 102 RKKQEEQAKRQQEEAAAQLKEK 123


>tr|A2AT37|A2AT37_MOUSE UPF2 regulator of nonsense transcripts
homolog (Yeast) OS=Mus musculus GN=Upf2 PE=2 SV=1
Length = 1269

Score = 37.4 bits (85), Expect = 0.38
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +3

Query: 243 KI*VHQKISKVPQSRKNRNEEDLEAVLD------EVPKIRYEEE--KRSESSHRIQEIAG 398
K+ +++SKVP+ +K R EED D E K++ EEE K+ E + QE
Sbjct: 42 KVTAKKEVSKVPEDKKKRLEEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKQEEEE 101

Query: 399 RPRVSVQMSTQ*VEAIAQADAK 464
R + Q Q EA AQ K
Sbjct: 102 RKKQEEQAKRQQEEAAAQLKEK 123


>tr|B6C868|B6C868_9ROSA Sucrose non-fermenting-1-related protein
kinase 1 OS=Malus hupehensis PE=2 SV=1
Length = 515

Score = 34.3 bits (77), Expect = 3.2
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +3

Query: 120 PTSRRKSNHDQYLPNYKVGTVHLLLGVKDQHLVSKIDILARKI*VHQKISKVPQSRKNRN 299
P R S+ D YLPNYK+G LG+ K+ I + H+ K+ RK +N
Sbjct: 4 PVGRGGSSADTYLPNYKLGKT---LGIGS---FGKVKIAEHALTGHKVAIKILNRRKIKN 57

Query: 300 EEDLEAVLDEVPKIR 344
E E V E+ +R
Sbjct: 58 LEMEEKVRREIKILR 72


>tr|Q5C182|Q5C182_SCHJA SJCHGC08031 protein (Fragment)
OS=Schistosoma japonicum PE=2 SV=2
Length = 217

Score = 34.3 bits (77), Expect = 3.2
Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +3

Query: 159 PNYKVGTVHLLLGVKDQHLVSKIDILARKI--*VHQKISKVPQSRKNRNEEDL 311
P++KVGT+ +L+G+ D+ +SK+D+ A I V Q + V + +K++ E++L
Sbjct: 29 PDFKVGTLDILVGLSDE--LSKLDVYAESITKKVAQYMGDVLEEQKHKLEDNL 79


>tr|Q869Q5|Q869Q5_DICDI Similar to Arabidopsis thaliana (Mouse-ear
cress). Genomic DNA, chromosome 5, P1 clone:MQJ2
OS=Dictyostelium discoideum PE=4 SV=1
Length = 1837

Score = 33.1 bits (74), Expect = 7.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1

Query: 247 FKYTKKSQKSRKVERIGMKKI--WKLCLMKYQKYDMRRRSDQN 369
FK KKS+ ++ + I M ++ W L L+ Y K D+ RRS N
Sbjct: 1521 FKPMKKSKDNQLINSISMGQLMCWNLLLLNYSKIDLNRRSILN 1563


>tr|Q555H8|Q555H8_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0217525 PE=4 SV=1
Length = 1864

Score = 33.1 bits (74), Expect = 7.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1

Query: 247 FKYTKKSQKSRKVERIGMKKI--WKLCLMKYQKYDMRRRSDQN 369
FK KKS+ ++ + I M ++ W L L+ Y K D+ RRS N
Sbjct: 1548 FKPMKKSKDNQLINSISMGQLMCWNLLLLNYSKIDLNRRSILN 1590


>tr|B6LBM0|B6LBM0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_68569 PE=4 SV=1
Length = 5553

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3

Query: 288 KNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPR 407
K++ EE+L+ LDE + R E+EKR E + QE R R
Sbjct: 4439 KHKKEEELKQRLDEQERKRKEDEKRKEEERKKQEEEERRR 4478


>tr|B0XCL0|B0XCL0_CULQU Myosin I OS=Culex quinquefasciatus
GN=CpipJ_CPIJ017220 PE=4 SV=1
Length = 488

Score = 32.7 bits (73), Expect = 9.2
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Frame = +3

Query: 252 VHQKISKVPQSRKNRNEEDLEAV-----LDEVPKIRYEEEKRSESSHRIQEIAGRPRVSV 416
V Q++ ++P+ +K R++ + V ++E PK + ++EKR + QE G ++S+
Sbjct: 253 VCQEVEEIPKKKKKRSKNEAPEVEVTQEVEETPKKKSKKEKRRQIEEEAQETVGE-QISL 311

Query: 417 QMSTQ*VE 440
+ + VE
Sbjct: 312 EQLEEPVE 319


>tr|B6Q942|B6Q942_PENMA ATP-dependent RNA helicase Mrh4, putative
OS=Penicillium marneffei ATCC 18224 GN=PMAA_070820 PE=4
SV=1
Length = 640

Score = 32.7 bits (73), Expect = 9.2
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = +3

Query: 120 PTSRRKS-----NHDQYLPNYKVGTVHLLLGVKDQHLVSKIDILARKI*VHQKISKVPQS 284
PT ++K+ N++Q+L + G+ L +LV ID + R + +KI + Q
Sbjct: 192 PTKKKKASELQYNYEQFLLAAETGSGKTLA-----YLVPIIDNIKRTE-MAEKIEEEKQL 245

Query: 285 RKNRNEEDLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSVQMSTQ*VEAIAQADAK 464
+ E + A K R+ E + E S + AGRPR + + T E +AQ AK
Sbjct: 246 AEKAKESEKRA------KERHNELEPPELSENLTTSAGRPRAIILLPTS--ELVAQVGAK 297


>tr|A7TF71|A7TF71_VANPO Putative uncharacterized protein
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=Kpol_2000p63 PE=4 SV=1
Length = 1053

Score = 32.7 bits (73), Expect = 9.2
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3

Query: 261 KISKVPQSRKNRNEE-DLEAVLDEVPKIRYEEEKRSESSHRIQEIAGRPRVSVQMSTQ 431
K+ K+P + +NRN E + LDEV ++ ++ KR + + E+A + R+S M Q
Sbjct: 635 KVPKLPDNLENRNPELNFALNLDEV-VVQGKDNKRGHNKYETDELADQMRISALMLAQ 691