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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912707
Clone id YMU001_000022_A02
Library
Length 298
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTGACAAAACAAAGGAAGAAGTGGAGACCGCGTACCCTTACAAAGGCAGTCAAAAATCA
AGTACAAAAAGCCATCACCCACAAGGTTGACGACCGTGTGGCGTCCACGCTATGCGAACA
ACAACGGCAAGAGGAGATCGCCCTCAATGTTCGCATTGGTGGGTTGTAAAGTGACTGGAA
AGGGGATGGAGACCTCGATTTCCACGAATCCATTGCCCGGATCCAAACAACAACACACAT
GATAGAGTGGGGCCCAGCAACAATCGCCTCCGTCACACATGAGCATCTCACCGATCAT
■■Homology search results ■■ -
sp_hit_id Q5FKQ8
Definition sp|Q5FKQ8|DAPB_LACAC Dihydrodipicolinate reductase OS=Lactobacillus acidophilus
Align length 51
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912707|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_A02.
         (298 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FKQ8|DAPB_LACAC Dihydrodipicolinate reductase OS=Lactobacil...    32   1.3  
sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila...    30   2.9  
sp|Q3Z6U4|ISPH_DEHE1 4-hydroxy-3-methylbut-2-enyl diphosphate re...    30   3.8  
sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidop...    30   3.8  
sp|Q92831|PCAF_HUMAN Histone acetyltransferase PCAF OS=Homo sapi...    29   6.5  
sp|Q3ZYL6|ISPH_DEHSC 4-hydroxy-3-methylbut-2-enyl diphosphate re...    29   6.5  
sp|A5FPY7|ISPH_DEHSB 4-hydroxy-3-methylbut-2-enyl diphosphate re...    29   6.5  
sp|A3CSI6|SYI_METMJ Isoleucyl-tRNA synthetase OS=Methanoculleus ...    29   8.4  
sp|Q9JHD1|PCAF_MOUSE Histone acetyltransferase PCAF OS=Mus muscu...    29   8.4  
sp|P38631|FKS1_YEAST 1,3-beta-glucan synthase component FKS1 OS=...    29   8.4  
sp|Q6DW76|DGDG1_SOYBN Digalactosyldiacylglycerol synthase 1, chl...    29   8.4  
sp|Q8IYA2|C144C_HUMAN Coiled-coil domain-containing protein 144C...    29   8.4  

>sp|Q5FKQ8|DAPB_LACAC Dihydrodipicolinate reductase OS=Lactobacillus
           acidophilus GN=dapB PE=3 SV=1
          Length = 261

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 23  WRPRTLTKAVKNQVQKAITHKVDDRVAST-LCEQQRQE--EIALNVRIGGL 166
           W   TL KAV N V+ A+TH +   V +T L + Q  E  EI+   ++GG+
Sbjct: 70  WIDFTLPKAVYNNVKFALTHHISPIVGTTGLSDGQEAELIEISKEEKVGGI 120


>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila
            melanogaster GN=mus309 PE=1 SV=1
          Length = 1487

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
 Frame = +3

Query: 9    NKGRSGDRVPLQRQSKIKYKKPSPT----RLTTVWRPRYANNNGKRRSPSMFALVGCKVT 176
            N  R+G R  + +    K  K S T    R TT  R R      KR   S  +  G K  
Sbjct: 1411 NSFRAGKRKKIYKSGASKRYKTSTTSPAARKTTSARGRGGRAGAKRAESSASSASGWKSK 1470

Query: 177  GKGMETSISTNPLPGSK 227
              G        PLPGSK
Sbjct: 1471 KTGNSFGFDLMPLPGSK 1487


>sp|Q3Z6U4|ISPH_DEHE1 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase OS=Dehalococcoides ethenogenes (strain 195)
           GN=ispH PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 29  PRTLTKAVKNQVQKAITHKVDDRVASTLCEQQRQEEIA 142
           P   T  VKN + +A+    + R+A TLC   R+ + A
Sbjct: 165 PTGFTSFVKNVIDQALVKDAEIRIADTLCHDIRERQTA 202


>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis
           thaliana GN=BLH6 PE=2 SV=1
          Length = 532

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 99  WRPRYANNNGKRRSPSMFALVGCKVTGKGMETSISTNPLPG 221
           WR + ++ NG +   +M    G   TG+G+  S+ +  LPG
Sbjct: 67  WRDQASDRNGFQLMSAMAGATGILQTGQGLSLSLGSQILPG 107


>sp|Q92831|PCAF_HUMAN Histone acetyltransferase PCAF OS=Homo sapiens
           GN=PCAF PE=1 SV=3
          Length = 832

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = -2

Query: 210 DSWKSRSPSPFQSLYNPPMRTLRAI-----SSCRCCSHSVDA 100
           + WK+ +PSP      PP   L+ I      SCR CSH++ A
Sbjct: 109 NGWKNPNPSP-----TPPRADLQQIIVSLTESCRSCSHALAA 145


>sp|Q3ZYL6|ISPH_DEHSC 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase OS=Dehalococcoides sp. (strain CBDB1) GN=ispH
           PE=3 SV=1
          Length = 284

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 29  PRTLTKAVKNQVQKAITHKVDDRVASTLCEQQRQEEIA 142
           P   T  VKN + +A+    + R+A TLC   R  + A
Sbjct: 165 PTGFTSFVKNVIDQALVKDAEIRIADTLCHDIRDRQAA 202


>sp|A5FPY7|ISPH_DEHSB 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase OS=Dehalococcoides sp. (strain BAV1) GN=ispH
           PE=3 SV=1
          Length = 284

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 29  PRTLTKAVKNQVQKAITHKVDDRVASTLCEQQRQEEIA 142
           P   T  VKN + +A+    + R+A TLC   R  + A
Sbjct: 165 PTGFTSFVKNVIDQALVKDAEIRIADTLCHDIRDRQAA 202


>sp|A3CSI6|SYI_METMJ Isoleucyl-tRNA synthetase OS=Methanoculleus
            marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=ileS
            PE=3 SV=1
          Length = 1059

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 89   DDRVASTLCEQQRQEEIALNVRIGGL 166
            DDRVAS + E++ Q+EIA  VR   L
Sbjct: 998  DDRVASLIAEEEWQKEIAGEVRAAAL 1023


>sp|Q9JHD1|PCAF_MOUSE Histone acetyltransferase PCAF OS=Mus musculus
           GN=Pcaf PE=1 SV=2
          Length = 813

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = -2

Query: 210 DSWKSRSPSPFQSLYNPPMRTLRAI-----SSCRCCSHSVDA 100
           + WK+ +PSP      PP   L+ I      SCR CSH++ A
Sbjct: 91  NGWKNPNPSP-----TPPRGDLQQIIVSLTESCRSCSHALAA 127


>sp|P38631|FKS1_YEAST 1,3-beta-glucan synthase component FKS1
            OS=Saccharomyces cerevisiae GN=FKS1 PE=1 SV=2
          Length = 1876

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 295  IGEMLMCDGGDCCWAPLYHVCC 230
            +G +  C G  CC  PL+ +CC
Sbjct: 1614 LGVLFFCMGMSCCSGPLFGMCC 1635
tr_hit_id Q2GVA2
Definition tr|Q2GVA2|Q2GVA2_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 43
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912707|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_A02.
         (298 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2GVA2|Q2GVA2_CHAGB Putative uncharacterized protein OS=Chaet...    35   2.4  
tr|A7EB04|A7EB04_SCLS1 Putative uncharacterized protein OS=Scler...    34   3.1  
tr|A3XKU5|A3XKU5_9FLAO Putative uncharacterized protein OS=Leeuw...    33   7.0  
tr|Q86EQ2|Q86EQ2_SCHJA Clone ZZD1548 mRNA sequence OS=Schistosom...    33   9.2  
tr|Q5DDT1|Q5DDT1_SCHJA SJCHGC09425 protein OS=Schistosoma japoni...    33   9.2  
tr|Q1QYD2|Q1QYD2_CHRSD DNA helicase/exodeoxyribonuclease V, alph...    33   9.2  

>tr|Q2GVA2|Q2GVA2_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_08102 PE=4 SV=1
          Length = 886

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 35  TLTKAVKNQVQKAITHKVDDRVASTLCEQQRQEEIALNVRIGG 163
           TLTK  ++   K   HK ++R  +TL +QQ+ +   L+VR+GG
Sbjct: 504 TLTKETQDLKVKIEGHKRENRRLATLLDQQKDDSARLSVRLGG 546


>tr|A7EB04|A7EB04_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_02490 PE=4 SV=1
          Length = 935

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 38  LTKAVKNQVQKAITHKVDDRVASTLCEQQRQEEIALNVRIGG 163
           LTK  ++   K  THK ++R  +TL EQQ+ +   LN R+ G
Sbjct: 562 LTKETQDLKVKIETHKRENRRLTTLIEQQKDDAARLNTRLAG 603


>tr|A3XKU5|A3XKU5_9FLAO Putative uncharacterized protein
           OS=Leeuwenhoekiella blandensis MED217 GN=MED217_01730
           PE=4 SV=1
          Length = 811

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 5   TKQRKKWRP--RTLTKAVKNQVQKAITHKVDDRVASTLCEQQRQEEIALNVRIGGL*SDW 178
           TKQ+ K++P  + +T   K+      THKVDD++  T+ +    +++ L  RI  + S +
Sbjct: 34  TKQKSKFKPYNKVITAEAKSDAGLFTTHKVDDKLYFTIPDSLMGKDMLLVSRIAKVPSGY 93

Query: 179 KG 184
            G
Sbjct: 94  GG 95


>tr|Q86EQ2|Q86EQ2_SCHJA Clone ZZD1548 mRNA sequence OS=Schistosoma
           japonicum PE=2 SV=1
          Length = 304

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 235 CCCLDPGNGFVEIEVSIPFPVTLQPTNAN 149
           C C+ P NG++E   SI   V LQP N N
Sbjct: 52  CYCVKPSNGYIEPHQSIEVAVMLQPFNYN 80


>tr|Q5DDT1|Q5DDT1_SCHJA SJCHGC09425 protein OS=Schistosoma japonicum
           PE=2 SV=1
          Length = 354

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 235 CCCLDPGNGFVEIEVSIPFPVTLQPTNAN 149
           C C+ P NG++E   SI   V LQP N N
Sbjct: 52  CYCVKPSNGYIEPHQSIEVAVMLQPFNYN 80


>tr|Q1QYD2|Q1QYD2_CHRSD DNA helicase/exodeoxyribonuclease V, alpha
           subunit OS=Chromohalobacter salexigens (strain DSM 3043
           / ATCC BAA-138 / NCIMB 13768) GN=Csal_1170 PE=4 SV=1
          Length = 655

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 251 PTLSCVLLFGSGQWIRGNRGLHPLSSHFTTHQCEH*GRSPLAVVVRIAWTPH 96
           P +S   LF S  W      L PL +HF     EH  R+P+ V++  A   H
Sbjct: 14  PGMSRESLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAAALASH 65