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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912609
Clone id YMU001_000020_H04
Library
Length 400
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATACCGTTTACCTTCTCATGAGGATTGGTGGGTGTTCTTTGCCCTAACTTAGGAGACTT
GATTGTTGCGTAGCAGGGGACTTCGGTGTTTGAGGTTGCACAAACTGGCCATCATGGCCA
TCATATCCGATTGGAGTTTTAGGGTAAAGTACCTCTTGATTAGCATGTGGATGTACATTG
GCAGCTTGTTAGAGTGGTGTGCTCTTCAAAGCGGCGCTCTTGTGTTGACCCTATCTTGAT
TGCAGTGGAGACATTACTTTGGAGATTGTGGATATGGTAGGGAAAGCCCCTAGTTAATTT
GGATTGGGATCGTGGTGAGTGGCAGTGGCCTTCTTTGAAGGCTGATGGGGTCCCTCTTTC
ATTTTTTGAGTACATTGTCTCCCTTGGGAGGAGGCTTATC
■■Homology search results ■■ -
sp_hit_id Q92212
Definition sp|Q92212|STE20_CANAL Serine/threonine-protein kinase CST20 OS=Candida albicans
Align length 71
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912609|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_H04.
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92212|STE20_CANAL Serine/threonine-protein kinase CST20 OS=C...    33   0.58 
sp|Q8Y5N8|SYI_LISMO Isoleucyl-tRNA synthetase OS=Listeria monocy...    30   4.9  
sp|Q71Y01|SYI_LISMF Isoleucyl-tRNA synthetase OS=Listeria monocy...    30   4.9  
sp|Q929Z6|SYI_LISIN Isoleucyl-tRNA synthetase OS=Listeria innocu...    30   4.9  
sp|Q0AYC7|SYI_SYNWW Isoleucyl-tRNA synthetase OS=Syntrophomonas ...    29   6.3  
sp|Q9MA43|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=...    29   6.4  
sp|A0AKC5|SYI_LISW6 Isoleucyl-tRNA synthetase OS=Listeria welshi...    29   8.3  
sp|Q039Q9|SYI_LACC3 Isoleucyl-tRNA synthetase OS=Lactobacillus c...    29   8.3  

>sp|Q92212|STE20_CANAL Serine/threonine-protein kinase CST20
           OS=Candida albicans GN=CST20 PE=3 SV=2
          Length = 1228

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -3

Query: 260 KVMSPLQSR*GQHKSAALKSTPL*QAANVHPHANQEVLY-PKTPIGYDGHDGQFVQPQ-T 87
           KV++P QS   + +S         Q+ N HPH +    Y P+TP  +   +GQF+  +  
Sbjct: 600 KVITPSQSMPTKTESK--------QSENQHPHEDNATQYTPRTPTSH-VQEGQFIPSRPA 650

Query: 86  PKSPATQQSSL 54
           PK P+T  SS+
Sbjct: 651 PKPPSTPLSSM 661


>sp|Q8Y5N8|SYI_LISMO Isoleucyl-tRNA synthetase OS=Listeria
           monocytogenes GN=ileS PE=3 SV=1
          Length = 921

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 227 DPILIAVETLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFF 367
           D +L AV+ + W    W    L N+  DRG+W     +A GVPL  F
Sbjct: 419 DDLLAAVKGVNWTP-AWGETRLFNMVRDRGDWVISRQRAWGVPLPIF 464


>sp|Q71Y01|SYI_LISMF Isoleucyl-tRNA synthetase OS=Listeria
           monocytogenes serotype 4b (strain F2365) GN=ileS PE=3
           SV=1
          Length = 921

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 227 DPILIAVETLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFF 367
           D +L AV+ + W    W    L N+  DRG+W     +A GVPL  F
Sbjct: 419 DDLLAAVKGVNWTP-AWGETRLFNMVRDRGDWVISRQRAWGVPLPIF 464


>sp|Q929Z6|SYI_LISIN Isoleucyl-tRNA synthetase OS=Listeria innocua
           GN=ileS PE=3 SV=1
          Length = 921

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 227 DPILIAVETLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFF 367
           D +L AV+ + W    W    L N+  DRG+W     +A GVPL  F
Sbjct: 419 DDLLAAVKGVNWTP-AWGETRLFNMVRDRGDWVISRQRAWGVPLPIF 464


>sp|Q0AYC7|SYI_SYNWW Isoleucyl-tRNA synthetase OS=Syntrophomonas
           wolfei subsp. wolfei (strain Goettingen) GN=ileS PE=3
           SV=1
          Length = 927

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 236 LIAVETLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFFEYIVSLGRRLI 400
           L A++T+ W +  W    + N+  DRG+W     +  GVP+  F Y  S G  LI
Sbjct: 426 LNAIDTVKW-IPSWGRDRIFNMIRDRGDWCISRQRTWGVPIPIF-YCESCGEALI 478


>sp|Q9MA43|ATX2_ARATH Histone-lysine N-methyltransferase ATX2
           OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1
          Length = 1193

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = -3

Query: 374 CTQKMKEGPHQPSKKATATHHDPNPN*LGAFPTISTISKVMSPL--QSR*GQHKSAALKS 201
           C  K +EG     K     H   NP    +  ++ ++S   S L  ++  G HK      
Sbjct: 3   CVPKEEEGEDTQIKTELHDHAADNPVRYASLESVYSVSSSSSSLCCKTAAGSHKKVNALK 62

Query: 200 TPL*QAANVHPHANQEVLY 144
            P+  +  + PH   E+++
Sbjct: 63  LPMSDSFELQPHRRPEIVH 81


>sp|A0AKC5|SYI_LISW6 Isoleucyl-tRNA synthetase OS=Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 /
           SLCC5334) GN=ileS PE=3 SV=1
          Length = 921

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 227 DPILIAVETLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFF 367
           D +L AV+ + W    W    L N+  DRG+W     +A GVPL  F
Sbjct: 419 DDLLKAVKGVNWTP-AWGETRLFNMVRDRGDWVISRQRAWGVPLPIF 464


>sp|Q039Q9|SYI_LACC3 Isoleucyl-tRNA synthetase OS=Lactobacillus
           casei (strain ATCC 334) GN=ileS PE=3 SV=1
          Length = 928

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 227 DPILIAVETLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFF 367
           D IL A++T+ ++   W    L N+  DRG+W     +A GVPL  F
Sbjct: 419 DQILKAIDTVDFKP-SWGKTRLYNMIRDRGDWVISRQRAWGVPLPIF 464
tr_hit_id A9SA28
Definition tr|A9SA28|A9SA28_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912609|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_H04.
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SA28|A9SA28_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.4  
tr|B6FCI6|B6FCI6_9ENTR Putative uncharacterized protein OS=Enter...    35   1.9  
tr|A9SEE5|A9SEE5_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|Q5N2L5|Q5N2L5_SYNP6 Permease protein of amino acid ABC transp...    33   9.1  
tr|Q31RN9|Q31RN9_SYNE7 Amino acid ABC transporter, permease prot...    33   9.1  
tr|A4RUJ8|A4RUJ8_OSTLU Predicted protein (Fragment) OS=Ostreococ...    33   9.1  
tr|B8ME85|B8ME85_9EURO NB-ARC and TPR domain protein OS=Talaromy...    33   9.1  
tr|Q54L49|Q54L49_DICDI Putative uncharacterized protein (Fragmen...    33   9.2  

>tr|A9SA28|A9SA28_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76531 PE=4 SV=1
          Length = 496

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 263 RLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFFEYIVSLG 388
           RLW++   P+  L WD  +WQW  L     P +FF+Y    G
Sbjct: 302 RLWLFGTVPISQLGWDPRDWQWARLGC-LQPCNFFQYTTKRG 342


>tr|B6FCI6|B6FCI6_9ENTR Putative uncharacterized protein
           OS=Enterobacter cancerogenus ATCC 35316 GN=ENTCAN_02452
           PE=4 SV=1
          Length = 336

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = +3

Query: 105 LAIMAIISDWSFRVKYLLISMWMYIGSLLEWCALQSGALVLTLS*LQWRHYFGDCGYGRE 284
           LAI+A +S W+      + + W  + +L  W  L   ALVL LS LQWR    D  + R 
Sbjct: 203 LAIIAAVSVWTPLSYPAIAARWFSLPNL--WFLLPVPALVLLLSVLQWRCLNNDDSHSR- 259

Query: 285 SP*LIWIGIV 314
            P ++ +G++
Sbjct: 260 -PFILTLGLI 268


>tr|A9SEE5|A9SEE5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_78252 PE=4 SV=1
          Length = 337

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 218 SCVDPILIAVE--TLLWRLWIW*GKPLVNLDWDRGEWQWPSLKADGVPLSFFEYIVSLGR 391
           S +DP  +  E  TL +R+W++   P++ L WD  +W W  +       +F+ Y   LG 
Sbjct: 42  SRLDPARLPREQNTLPYRVWLFSSAPILYLPWDPIDWHWNDIGC-VKGRNFYAYTTKLGY 100

Query: 392 RL 397
           R+
Sbjct: 101 RI 102


>tr|Q5N2L5|Q5N2L5_SYNP6 Permease protein of amino acid ABC
           transporter OS=Synechococcus sp. (strain ATCC 27144 /
           PCC 6301 / SAUG 1402/1) GN=syc1265_c PE=3 SV=1
          Length = 396

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 15/57 (26%)
 Frame = +2

Query: 260 WRLWIW*G--KPLVNLDWD-----------RGEWQWPSLKA--DGVPLSFFEYIVSL 385
           WRLW+W G   P + L W            R  W W  L A   G+PL +F + + L
Sbjct: 77  WRLWLWLGLLSPTLGLTWGCLATGSHRWQRRSLWGWAGLAAAIAGIPLPWFPHKLGL 133


>tr|Q31RN9|Q31RN9_SYNE7 Amino acid ABC transporter, permease
           protein, 3-TM region, His/Glu/Gln/Arg/opine
           OS=Synechococcus elongatus (strain PCC 7942)
           GN=Synpcc7942_0248 PE=3 SV=1
          Length = 396

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 15/57 (26%)
 Frame = +2

Query: 260 WRLWIW*G--KPLVNLDWD-----------RGEWQWPSLKA--DGVPLSFFEYIVSL 385
           WRLW+W G   P + L W            R  W W  L A   G+PL +F + + L
Sbjct: 77  WRLWLWLGLLSPTLGLTWGCLATGSHRWQRRSLWGWAGLAAAIAGIPLPWFPHKLGL 133


>tr|A4RUJ8|A4RUJ8_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_7192 PE=4 SV=1
          Length = 201

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 164 HVDVHWQLVRVVCSSKRRSCVDPIL----IAVETLLWRLWIW*GKPLVNLDWDRGEW 322
           H  VHW L  +    KR S  D +L    +AV+ L  R  I   K  +N DWD  EW
Sbjct: 93  HQSVHWVLAEIDTRKKRISYYDSLLGESGVAVKNLK-RWLIDEAKNKLNEDWDPDEW 148


>tr|B8ME85|B8ME85_9EURO NB-ARC and TPR domain protein OS=Talaromyces
            stipitatus ATCC 10500 GN=TSTA_015960 PE=4 SV=1
          Length = 1007

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 393  LLPRETMYSKNERGTPSAFKEGHCHS--PRSQSKLTRGFPYHIHNLQSNVSTAIKIGSTQ 220
            L  RE  Y  N+R +    K  H +     SQ KLT  F YHI  LQ   ST   IG   
Sbjct: 850  LAAREEAYGINDRESFMTGKLLHAYGNVKASQGKLTESFEYHIRGLQQYKST---IGGNH 906

Query: 219  ER 214
             R
Sbjct: 907  HR 908


>tr|Q54L49|Q54L49_DICDI Putative uncharacterized protein (Fragment)
            OS=Dictyostelium discoideum GN=DDB_0218867 PE=4 SV=1
          Length = 1553

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
 Frame = -3

Query: 368  QKMKEGPHQPSKKATATHHDPNPN*LGAFPTISTISKVMSPLQSR*GQHKSAALKSTPL* 189
            Q +  G  QPS      +H   P+   A    + + +  +P   +   H      STP  
Sbjct: 985  QHLITGIQQPSTPHQIPNHMQQPSTPQAHQIPNHMQQPSTPQAHQIPNHMQQP--STPQA 1042

Query: 188  QAANVH---PHANQEVLYPKTPIGYDGHDGQFVQPQTPKSPATQQSSLLS*GKEHPP 27
                 H   PH  Q+   P+  I       Q  QP TP+ P+T  SS    GK H P
Sbjct: 1043 HQIPNHMQQPHTPQQPNTPQQNIKIQSSQPQLQQPHTPQQPSTPGSS----GKPHTP 1095