BP912515
Clone id YMU001_000019_D04
Library
Length 580
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATCATCATCAATACGTACTTATCTCCTCAAGGAAAGTACAACCTACTAAGCAACATATG
GGTGAAATGCAAGAGTCGCGAAGCAGTAATTGCAGCATTTGACAGTGATAAGAAGGATGA
AGAGCCTCTTTTTATAGGGACATATATCAATGAAAGGACTTTTACTGAAGCCTTGGAACT
AGTGCCAGAAGCGGTGAGACAGAAGTTTGAGCAGCGAGGCAAGAAACTACGGTTCTTGGA
GGATATGGTGATCAAATCATCGGCACAAGAGTGGATAGACAGTGACTTGATAATAAAGCC
AGCAGAGGATGGTAGTCAATATGTTAATGTTCAATCTACTGCATTGATTGCGCCGTTGAA
AGGAATGCCAGCCAGATTTTCTGGTATGCATTATCTCAAGCTTCTCACAGCAGCAAGAGC
TTTGAGCTGGATATATGAAGATTCTTTTCGATGAGGGTCGCAAGTTCATTGGACTTCGTA
TCCATTTAGTAAACCTGCAGCCTGCTCTTGTAAAGAAAAGATATCCTGTACTCCCTACAG
CAAGTTCATATCAGCTAAATTGTGGATGACATCATGTGTT
■■Homology search results ■■ -
sp_hit_id Q12297
Definition sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subunit 3 OS=Saccharomyces cerevisiae
Align length 64
Score (bit) 31.2
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912515|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_D04.
(580 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subun... 31 3.9
sp|Q9P771|PRM1_SCHPO Plasma membrane fusion protein prm1 OS=Schi... 31 3.9
sp|Q80VN0|CCD37_MOUSE Coiled-coil domain-containing protein 37 O... 31 3.9
sp|P09436|SYIC_YEAST Isoleucyl-tRNA synthetase, cytoplasmic OS=S... 31 5.1
sp|Q5LMQ6|RPOC_SILPO DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q03ZM9|RS5_LEUMM 30S ribosomal protein S5 OS=Leuconostoc mese... 30 8.7
sp|Q8F332|FEOB_LEPIN Ferrous iron transport protein B OS=Leptosp... 30 8.7
sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora cra... 30 8.7
sp|Q9CEE2|CNPD_LACLA 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 30 8.7
sp|Q9VH78|ALG12_DROME Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP... 30 8.7

>sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subunit
3 OS=Saccharomyces cerevisiae GN=TAF3 PE=1 SV=1
Length = 353

Score = 31.2 bits (69), Expect = 3.9
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2

Query: 89 IAAFDSDKKDEEPLF-IGTYINERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSA 265
+ S++K+ +PL I Y+N+ L + +QK E + +K +ED++ +
Sbjct: 125 VELLQSEEKESDPLSAIPDYLNQL-------LQNKGAKQKLETKNRKTELIEDLINNNGL 177

Query: 266 QEWI 277
+WI
Sbjct: 178 DDWI 181


>sp|Q9P771|PRM1_SCHPO Plasma membrane fusion protein prm1
OS=Schizosaccharomyces pombe GN=prm1 PE=2 SV=1
Length = 703

Score = 31.2 bits (69), Expect = 3.9
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -2

Query: 372 AGIPFNGAINAVD*TLTY*LPSSAGFIIKSLSIHSCADDLITISSKNRSFLPRCSNFCLT 193
AG+ F+ AINA ++ S+ I++ +S +S D +SS N++ + CS LT
Sbjct: 212 AGVNFDSAINATKAAISKPFSSARNLILEKVSNYSF--DTSMVSSPNKTHVVVCSTDDLT 269

Query: 192 ASGTSSKASV-KVLSLIYVPI 133
A + +S+ K+ ++ + +
Sbjct: 270 AISSFILSSIYKIRKVVIISL 290


>sp|Q80VN0|CCD37_MOUSE Coiled-coil domain-containing protein 37
OS=Mus musculus GN=Ccdc37 PE=2 SV=1
Length = 459

Score = 31.2 bits (69), Expect = 3.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2

Query: 203 KFEQRGKKLRFLEDMVIKSSAQEWIDSD----LIIKPAEDGSQYVNVQSTALIAPLKG 364
KFE K + ++ + K S +EW+D L K A++ S+ STA++ KG
Sbjct: 97 KFEDTLKHYKIYKEFLYKLSPKEWLDEQQEKHLAFKRAKESSELTRNNSTAILFGDKG 154


>sp|P09436|SYIC_YEAST Isoleucyl-tRNA synthetase, cytoplasmic
OS=Saccharomyces cerevisiae GN=ILS1 PE=1 SV=1
Length = 1072

Score = 30.8 bits (68), Expect = 5.1
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +2

Query: 143 YINERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDL------IIKPA 304
+++E + E +PEAV K+ + G+ + FL V+K +E+ D + +
Sbjct: 775 FLSESIYLRLKEYIPEAVLAKYGKDGRSVHFLSYPVVK---KEYFDEAIETAVSRMQSVI 831

Query: 305 EDGSQYVNVQSTALIAPLKGMPARFSGMHYLKLLTAAR 418
+ G ++ +L PLK + S YLK + A +
Sbjct: 832 DLGRNIREKKTISLKTPLKTLVILHSDESYLKDVEALK 869


>sp|Q5LMQ6|RPOC_SILPO DNA-directed RNA polymerase subunit beta'
OS=Silicibacter pomeroyi GN=rpoC PE=3 SV=1
Length = 1413

Score = 30.4 bits (67), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2

Query: 35 KYNLLSNIWVKCKSR--EAVIAAFDSDKKDE 121
KYN + + W KC R EA+++ +DK+DE
Sbjct: 679 KYNKVVDAWSKCNDRVTEAMMSTISADKRDE 709


>sp|Q03ZM9|RS5_LEUMM 30S ribosomal protein S5 OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 /
NCDO 523) GN=rpsE PE=3 SV=1
Length = 168

Score = 30.0 bits (66), Expect = 8.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2

Query: 182 VPEAVRQKFEQRGKKLRFLEDM---VIKSSAQEWIDSDLIIKPAEDGS 316
VPEA+R+ E +KL + + + EW +++KPAE+GS
Sbjct: 58 VPEAIRKAIEDAKRKLITVPTVSTTIPHDVLGEWGGGKILVKPAEEGS 105


>sp|Q8F332|FEOB_LEPIN Ferrous iron transport protein B OS=Leptospira
interrogans GN=feoB PE=3 SV=1
Length = 701

Score = 30.0 bits (66), Expect = 8.7
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2

Query: 176 ELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTALIAP 355
E + +R+KFE+ GK+ +LE++ KS + I S+ I+ + ++ L+ P
Sbjct: 232 ETPSKLIREKFERFGKRFTYLEELTQKSIYIKKILSNAIVGDPIPNERVLSKADKILLHP 291

Query: 356 LKGM 367
G+
Sbjct: 292 FWGL 295


>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa
GN=ro-3 PE=3 SV=3
Length = 1367

Score = 30.0 bits (66), Expect = 8.7
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Frame = +2

Query: 71 KSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQRGKKLRFLEDM- 247
K AVI +S K+ + L I NE+ E ++L + ++F Q + LEDM
Sbjct: 565 KELRAVIDDLESLKEINDELEINHVQNEKEMQEEIDLKDSIIAEQFRQANLQRESLEDME 624

Query: 248 --------VIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTALI 349
++ S + D E+ S+ +N +S A++
Sbjct: 625 YTLSRFRELVTSLQSDLEDMRASHAVTENESEQLNSRSRAML 666


>sp|Q9CEE2|CNPD_LACLA 2',3'-cyclic-nucleotide 2'-phosphodiesterase
OS=Lactococcus lactis subsp. lactis GN=ytgF PE=3 SV=1
Length = 531

Score = 30.0 bits (66), Expect = 8.7
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2

Query: 2 IIINTYLSPQGKYNLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALEL 181
I+INT S G LSNI V + +A+ AA +++ I YI EA+
Sbjct: 409 IVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRES----IENYIKRLKDLEAIST 464

Query: 182 VPEAVRQKFE-QRGKKLRFL 238
E V F Q G+++R +
Sbjct: 465 SFEGVETAFALQAGREIRVM 484


>sp|Q9VH78|ALG12_DROME Probable
dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,
6-mannosyltransferase OS=Drosophila melanogaster
GN=CG8412 PE=2 SV=1
Length = 678

Score = 30.0 bits (66), Expect = 8.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -1

Query: 442 IFIYPA---QSSCCCEKLEIMHTRKSGWHSFQRRNQCSRLNINILTTILCWLYYQVTVYP 272
I+++P ++C C+++ M++ KS WHSF + L +N+ T+ L T YP
Sbjct: 303 IYVFPVLNIAAACACQRIW-MNSAKSTWHSFLALACGAHLLLNVFITLFL-LVISGTNYP 360


tr_hit_id B8LLK3
Definition tr|B8LLK3|B8LLK3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 150
Score (bit) 155.0
E-value 1.0e-36
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912515|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_D04.
(580 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LLK3|B8LLK3_PICSI Putative uncharacterized protein OS=Picea... 155 1e-36
tr|A9RWM0|A9RWM0_PHYPA Predicted protein OS=Physcomitrella paten... 85 3e-15
tr|B6PM14|B6PM14_BRAFL Putative uncharacterized protein OS=Branc... 57 1e-06
tr|B6LYB4|B6LYB4_BRAFL Putative uncharacterized protein OS=Branc... 50 1e-04
tr|Q3JBY3|Q3JBY3_NITOC N-6 DNA methylase OS=Nitrosococcus oceani... 36 1.4
tr|B6C0Y7|B6C0Y7_9GAMM N-6 DNA Methylase superfamily OS=Nitrosoc... 36 1.4
tr|B6ADN3|B6ADN3_9CRYT Putative uncharacterized protein OS=Crypt... 35 2.3
tr|B4JV77|B4JV77_DROGR GH17417 OS=Drosophila grimshawi GN=GH1741... 35 2.3
tr|Q22SD1|Q22SD1_TETTH Putative uncharacterized protein OS=Tetra... 35 3.0
tr|B4K8U1|B4K8U1_DROMO GI22746 OS=Drosophila mojavensis GN=GI227... 35 3.0
tr|A5KN53|A5KN53_9FIRM Putative uncharacterized protein OS=Rumin... 35 4.0
tr|A8PES7|A8PES7_COPC7 Predicted protein OS=Coprinopsis cinerea ... 34 6.8
tr|Q5YQJ6|Q5YQJ6_NOCFA Putative ABC transporter ATP-binding prot... 33 8.8
tr|B4FYC3|B4FYC3_MAIZE Putative uncharacterized protein OS=Zea m... 33 8.8

>tr|B8LLK3|B8LLK3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 530

Score = 155 bits (393), Expect = 1e-36
Identities = 72/150 (48%), Positives = 104/150 (69%)
Frame = +2

Query: 2 IIINTYLSPQGKYNLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALEL 181
I + YLS K+ ++ NIW+K KS EA+ + F + + + +N TF AL L
Sbjct: 382 IFVQVYLSSADKFGIIKNIWIKMKSYEAIQSIFQKSESQSKNVSAAD-LNADTFHRALSL 440

Query: 182 VPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTALIAPLK 361
PE R+KF + GKKLRF+ED+V+KSS Q+WIDSD+I+KPAEDG +V+VQST +I P+
Sbjct: 441 TPEVFRRKFYECGKKLRFIEDLVVKSSGQDWIDSDVIMKPAEDGLDFVDVQSTVIITPVS 500

Query: 362 GMPARFSGMHYLKLLTAARALSWIYEDSFR 451
G+ +RF+GMHY+K+L+ A+ + WI DSF+
Sbjct: 501 GVASRFAGMHYMKILSVAKCMEWIMLDSFQ 530


>tr|A9RWM0|A9RWM0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_71504 PE=4 SV=1
Length = 483

Score = 85.1 bits (209), Expect = 3e-15
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Frame = +2

Query: 2 IIINTYLSPQGKYNLLSNIWVKCKSREAVIAAF---DSDKKDEEP---LFIGTYINERTF 163
+ I TYLSP K + N+WVK KSREA++ F D +P L +G IN +TF
Sbjct: 301 VFITTYLSPAEKQGIC-NLWVKMKSREALLPHFGAGDDAGARYDPAAILTLGKEINTKTF 359

Query: 164 TEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTA 343
AL LV E R+KF + GKKL+F++D +++ SA WI+SDL P E G V V++
Sbjct: 360 DAALSLVSEDAREKFMKMGKKLQFVDDSLMQ-SAVSWIESDLSFTPTESGD--VEVRTPI 416

Query: 344 LIAPLKGMPARFSG 385
L +P P RF+G
Sbjct: 417 LYSPANINP-RFAG 429


>tr|B6PM14|B6PM14_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_108576 PE=4 SV=1
Length = 571

Score = 56.6 bits (135), Expect = 1e-06
Identities = 36/102 (35%), Positives = 51/102 (50%)
Frame = +2

Query: 146 INERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYV 325
+N+ F A +++Q+G +L F +D + KS+ W+ L DG+ V
Sbjct: 471 LNQMAFQIASTAASTVAMARYQQKGHQLTFADDEM-KSTGSGWLSGALTFDDQGDGT--V 527

Query: 326 NVQSTALIAPLKGMPARFSGMHYLKLLTAARALSWIYEDSFR 451
V S AL+ L F GMHY KLL+ RAL +IY DS R
Sbjct: 528 KVTSPALVTSLDAWFG-FDGMHYCKLLSPFRALEYIYTDSLR 568


>tr|B6LYB4|B6LYB4_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_75999 PE=4 SV=1
Length = 505

Score = 49.7 bits (117), Expect = 1e-04
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Frame = +2

Query: 146 INERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYV 325
+N+ F A +++Q+G +L F +D + KS+ W+ L + DG+ +
Sbjct: 386 LNQMAFQIASTAASTVAMARYQQKGHQLTFADDEM-KSTGSGWLSGALTFEDQGDGTVKI 444

Query: 326 N-----------------VQSTALIAPLKGMPARFSGMHYLKLLTAARALSWIYEDSFR 451
V S AL+ L F GMHY KLL+ RAL +IY DS R
Sbjct: 445 QCIYHKARAITYRTNALQVTSPALVTSLDAWFG-FDGMHYCKLLSPFRALEYIYTDSLR 502


>tr|Q3JBY3|Q3JBY3_NITOC N-6 DNA methylase OS=Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848) GN=Noc_1159 PE=4 SV=1
Length = 238

Score = 36.2 bits (82), Expect = 1.4
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +2

Query: 41 NLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQ-- 214
+L+++ W + A +A F+ K+++ L I Y++ TF E E+ +AV+++ EQ
Sbjct: 162 SLINDQWSIINEKFAHVAGFEEIKENDFNLNIPRYVD--TFEEEEEIDIQAVQREIEQLE 219

Query: 215 ------RGKKLRFLEDMVI 253
RGK R L+DMV+
Sbjct: 220 AELAEVRGKMDRLLKDMVV 238


>tr|B6C0Y7|B6C0Y7_9GAMM N-6 DNA Methylase superfamily
OS=Nitrosococcus oceani AFC27 GN=NOC27_578 PE=4 SV=1
Length = 244

Score = 36.2 bits (82), Expect = 1.4
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +2

Query: 41 NLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQ-- 214
+L+++ W + A +A F+ K+++ L I Y++ TF E E+ +AV+++ EQ
Sbjct: 168 SLINDQWSIINEKFAHVAGFEEIKENDFNLNIPRYVD--TFEEEEEIDIQAVQREIEQLE 225

Query: 215 ------RGKKLRFLEDMVI 253
RGK R L+DMV+
Sbjct: 226 AELAEVRGKMDRLLKDMVV 244


>tr|B6ADN3|B6ADN3_9CRYT Putative uncharacterized protein
OS=Cryptosporidium muris RN66 GN=CMU_008150 PE=4 SV=1
Length = 5879

Score = 35.4 bits (80), Expect = 2.3
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = -2

Query: 312 PSSAGFIIKSLSIHSCA----DDLITISSKNRSFLPRCSNFCLTASGTSSKASVKVLSLI 145
PSS +II+ H C +++++ S R +C F A+G S +L++
Sbjct: 1793 PSSELYIIRKHLHHICMVTIIPNILSLKSSCRRMAQKCLVFLANATGVSVAT---LLNIS 1849

Query: 144 YVPIKRGSSSFLSLSNAAITASRLLHFTHMLLSRL 40
+ GSSS LS S++ IT++ +L +LLSRL
Sbjct: 1850 FTSGNEGSSS-LSTSSSCITSNTIL---QLLLSRL 1880


>tr|B4JV77|B4JV77_DROGR GH17417 OS=Drosophila grimshawi GN=GH17417
PE=4 SV=1
Length = 672

Score = 35.4 bits (80), Expect = 2.3
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -1

Query: 442 IFIYPA---QSSCCCEKLEIMHTRKSGWHSFQRRNQCSRLNINILTTILCWLYYQVTVYP 272
I+++P ++C C+++ M++ KS WHSF S L +N++ TI L T YP
Sbjct: 303 IYVFPVLNIAAACACQRMW-MNSAKSAWHSFLALIAASHLLVNVIITIFL-LVVSGTNYP 360


>tr|Q22SD1|Q22SD1_TETTH Putative uncharacterized protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00006050 PE=4
SV=1
Length = 8668

Score = 35.0 bits (79), Expect = 3.0
Identities = 16/65 (24%), Positives = 36/65 (55%)
Frame = +2

Query: 101 DSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWID 280
D K++++ L I TY+N+ + +E + + + + E + KK++F +++I ++ D
Sbjct: 2793 DFSKQEQQILIINTYLNDSKCKQQIEFIMQKIDELSEYKNKKIQFQLNIIILVRVEDLYD 2852

Query: 281 SDLII 295
II
Sbjct: 2853 MIPII 2857


>tr|B4K8U1|B4K8U1_DROMO GI22746 OS=Drosophila mojavensis GN=GI22746
PE=4 SV=1
Length = 619

Score = 35.0 bits (79), Expect = 3.0
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -1

Query: 442 IFIYPA---QSSCCCEKLEIMHTRKSGWHSFQRRNQCSRLNINILTTILCWLYYQVTVYP 272
I+++P ++C C +L M++ KS WHSF S L +N+L TI L T YP
Sbjct: 303 IYVFPVLNIAAACGCHRLW-MNSAKSAWHSFLALIAASHLLVNVLITIFL-LVVSGTNYP 360