BP912515 |
Clone id |
YMU001_000019_D04 |
Library |
YMU01 |
Length |
580 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000019_D04. |
Accession |
BP912515 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CATCATCATCAATACGTACTTATCTCCTCAAGGAAAGTACAACCTACTAAGCAACATATG GGTGAAATGCAAGAGTCGCGAAGCAGTAATTGCAGCATTTGACAGTGATAAGAAGGATGA AGAGCCTCTTTTTATAGGGACATATATCAATGAAAGGACTTTTACTGAAGCCTTGGAACT AGTGCCAGAAGCGGTGAGACAGAAGTTTGAGCAGCGAGGCAAGAAACTACGGTTCTTGGA GGATATGGTGATCAAATCATCGGCACAAGAGTGGATAGACAGTGACTTGATAATAAAGCC AGCAGAGGATGGTAGTCAATATGTTAATGTTCAATCTACTGCATTGATTGCGCCGTTGAA AGGAATGCCAGCCAGATTTTCTGGTATGCATTATCTCAAGCTTCTCACAGCAGCAAGAGC TTTGAGCTGGATATATGAAGATTCTTTTCGATGAGGGTCGCAAGTTCATTGGACTTCGTA TCCATTTAGTAAACCTGCAGCCTGCTCTTGTAAAGAAAAGATATCCTGTACTCCCTACAG CAAGTTCATATCAGCTAAATTGTGGATGACATCATGTGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q12297 |
Definition |
sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subunit 3 OS=Saccharomyces cerevisiae |
Align length |
64 |
Score (bit) |
31.2 |
E-value |
3.9 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912515|Adiantum capillus-veneris mRNA, clone: YMU001_000019_D04. (580 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subun... 31 3.9 sp|Q9P771|PRM1_SCHPO Plasma membrane fusion protein prm1 OS=Schi... 31 3.9 sp|Q80VN0|CCD37_MOUSE Coiled-coil domain-containing protein 37 O... 31 3.9 sp|P09436|SYIC_YEAST Isoleucyl-tRNA synthetase, cytoplasmic OS=S... 31 5.1 sp|Q5LMQ6|RPOC_SILPO DNA-directed RNA polymerase subunit beta' O... 30 6.7 sp|Q03ZM9|RS5_LEUMM 30S ribosomal protein S5 OS=Leuconostoc mese... 30 8.7 sp|Q8F332|FEOB_LEPIN Ferrous iron transport protein B OS=Leptosp... 30 8.7 sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora cra... 30 8.7 sp|Q9CEE2|CNPD_LACLA 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 30 8.7 sp|Q9VH78|ALG12_DROME Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP... 30 8.7
>sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subunit 3 OS=Saccharomyces cerevisiae GN=TAF3 PE=1 SV=1 Length = 353
Score = 31.2 bits (69), Expect = 3.9 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +2
Query: 89 IAAFDSDKKDEEPLF-IGTYINERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSA 265 + S++K+ +PL I Y+N+ L + +QK E + +K +ED++ + Sbjct: 125 VELLQSEEKESDPLSAIPDYLNQL-------LQNKGAKQKLETKNRKTELIEDLINNNGL 177
Query: 266 QEWI 277 +WI Sbjct: 178 DDWI 181
>sp|Q9P771|PRM1_SCHPO Plasma membrane fusion protein prm1 OS=Schizosaccharomyces pombe GN=prm1 PE=2 SV=1 Length = 703
Score = 31.2 bits (69), Expect = 3.9 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = -2
Query: 372 AGIPFNGAINAVD*TLTY*LPSSAGFIIKSLSIHSCADDLITISSKNRSFLPRCSNFCLT 193 AG+ F+ AINA ++ S+ I++ +S +S D +SS N++ + CS LT Sbjct: 212 AGVNFDSAINATKAAISKPFSSARNLILEKVSNYSF--DTSMVSSPNKTHVVVCSTDDLT 269
Query: 192 ASGTSSKASV-KVLSLIYVPI 133 A + +S+ K+ ++ + + Sbjct: 270 AISSFILSSIYKIRKVVIISL 290
>sp|Q80VN0|CCD37_MOUSE Coiled-coil domain-containing protein 37 OS=Mus musculus GN=Ccdc37 PE=2 SV=1 Length = 459
Score = 31.2 bits (69), Expect = 3.9 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +2
Query: 203 KFEQRGKKLRFLEDMVIKSSAQEWIDSD----LIIKPAEDGSQYVNVQSTALIAPLKG 364 KFE K + ++ + K S +EW+D L K A++ S+ STA++ KG Sbjct: 97 KFEDTLKHYKIYKEFLYKLSPKEWLDEQQEKHLAFKRAKESSELTRNNSTAILFGDKG 154
>sp|P09436|SYIC_YEAST Isoleucyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=ILS1 PE=1 SV=1 Length = 1072
Score = 30.8 bits (68), Expect = 5.1 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Frame = +2
Query: 143 YINERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDL------IIKPA 304 +++E + E +PEAV K+ + G+ + FL V+K +E+ D + + Sbjct: 775 FLSESIYLRLKEYIPEAVLAKYGKDGRSVHFLSYPVVK---KEYFDEAIETAVSRMQSVI 831
Query: 305 EDGSQYVNVQSTALIAPLKGMPARFSGMHYLKLLTAAR 418 + G ++ +L PLK + S YLK + A + Sbjct: 832 DLGRNIREKKTISLKTPLKTLVILHSDESYLKDVEALK 869
>sp|Q5LMQ6|RPOC_SILPO DNA-directed RNA polymerase subunit beta' OS=Silicibacter pomeroyi GN=rpoC PE=3 SV=1 Length = 1413
Score = 30.4 bits (67), Expect = 6.7 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +2
Query: 35 KYNLLSNIWVKCKSR--EAVIAAFDSDKKDE 121 KYN + + W KC R EA+++ +DK+DE Sbjct: 679 KYNKVVDAWSKCNDRVTEAMMSTISADKRDE 709
>sp|Q03ZM9|RS5_LEUMM 30S ribosomal protein S5 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rpsE PE=3 SV=1 Length = 168
Score = 30.0 bits (66), Expect = 8.7 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +2
Query: 182 VPEAVRQKFEQRGKKLRFLEDM---VIKSSAQEWIDSDLIIKPAEDGS 316 VPEA+R+ E +KL + + + EW +++KPAE+GS Sbjct: 58 VPEAIRKAIEDAKRKLITVPTVSTTIPHDVLGEWGGGKILVKPAEEGS 105
>sp|Q8F332|FEOB_LEPIN Ferrous iron transport protein B OS=Leptospira interrogans GN=feoB PE=3 SV=1 Length = 701
Score = 30.0 bits (66), Expect = 8.7 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = +2
Query: 176 ELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTALIAP 355 E + +R+KFE+ GK+ +LE++ KS + I S+ I+ + ++ L+ P Sbjct: 232 ETPSKLIREKFERFGKRFTYLEELTQKSIYIKKILSNAIVGDPIPNERVLSKADKILLHP 291
Query: 356 LKGM 367 G+ Sbjct: 292 FWGL 295
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa GN=ro-3 PE=3 SV=3 Length = 1367
Score = 30.0 bits (66), Expect = 8.7 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Frame = +2
Query: 71 KSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQRGKKLRFLEDM- 247 K AVI +S K+ + L I NE+ E ++L + ++F Q + LEDM Sbjct: 565 KELRAVIDDLESLKEINDELEINHVQNEKEMQEEIDLKDSIIAEQFRQANLQRESLEDME 624
Query: 248 --------VIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTALI 349 ++ S + D E+ S+ +N +S A++ Sbjct: 625 YTLSRFRELVTSLQSDLEDMRASHAVTENESEQLNSRSRAML 666
>sp|Q9CEE2|CNPD_LACLA 2',3'-cyclic-nucleotide 2'-phosphodiesterase OS=Lactococcus lactis subsp. lactis GN=ytgF PE=3 SV=1 Length = 531
Score = 30.0 bits (66), Expect = 8.7 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +2
Query: 2 IIINTYLSPQGKYNLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALEL 181 I+INT S G LSNI V + +A+ AA +++ I YI EA+ Sbjct: 409 IVINTIASHHGDTEPLSNIAVLVAAADALSAARPGARRES----IENYIKRLKDLEAIST 464
Query: 182 VPEAVRQKFE-QRGKKLRFL 238 E V F Q G+++R + Sbjct: 465 SFEGVETAFALQAGREIRVM 484
>sp|Q9VH78|ALG12_DROME Probable dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1, 6-mannosyltransferase OS=Drosophila melanogaster GN=CG8412 PE=2 SV=1 Length = 678
Score = 30.0 bits (66), Expect = 8.7 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = -1
Query: 442 IFIYPA---QSSCCCEKLEIMHTRKSGWHSFQRRNQCSRLNINILTTILCWLYYQVTVYP 272 I+++P ++C C+++ M++ KS WHSF + L +N+ T+ L T YP Sbjct: 303 IYVFPVLNIAAACACQRIW-MNSAKSTWHSFLALACGAHLLLNVFITLFL-LVISGTNYP 360
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LLK3 |
Definition |
tr|B8LLK3|B8LLK3_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
150 |
Score (bit) |
155.0 |
E-value |
1.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912515|Adiantum capillus-veneris mRNA, clone: YMU001_000019_D04. (580 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LLK3|B8LLK3_PICSI Putative uncharacterized protein OS=Picea... 155 1e-36 tr|A9RWM0|A9RWM0_PHYPA Predicted protein OS=Physcomitrella paten... 85 3e-15 tr|B6PM14|B6PM14_BRAFL Putative uncharacterized protein OS=Branc... 57 1e-06 tr|B6LYB4|B6LYB4_BRAFL Putative uncharacterized protein OS=Branc... 50 1e-04 tr|Q3JBY3|Q3JBY3_NITOC N-6 DNA methylase OS=Nitrosococcus oceani... 36 1.4 tr|B6C0Y7|B6C0Y7_9GAMM N-6 DNA Methylase superfamily OS=Nitrosoc... 36 1.4 tr|B6ADN3|B6ADN3_9CRYT Putative uncharacterized protein OS=Crypt... 35 2.3 tr|B4JV77|B4JV77_DROGR GH17417 OS=Drosophila grimshawi GN=GH1741... 35 2.3 tr|Q22SD1|Q22SD1_TETTH Putative uncharacterized protein OS=Tetra... 35 3.0 tr|B4K8U1|B4K8U1_DROMO GI22746 OS=Drosophila mojavensis GN=GI227... 35 3.0 tr|A5KN53|A5KN53_9FIRM Putative uncharacterized protein OS=Rumin... 35 4.0 tr|A8PES7|A8PES7_COPC7 Predicted protein OS=Coprinopsis cinerea ... 34 6.8 tr|Q5YQJ6|Q5YQJ6_NOCFA Putative ABC transporter ATP-binding prot... 33 8.8 tr|B4FYC3|B4FYC3_MAIZE Putative uncharacterized protein OS=Zea m... 33 8.8
>tr|B8LLK3|B8LLK3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 530
Score = 155 bits (393), Expect = 1e-36 Identities = 72/150 (48%), Positives = 104/150 (69%) Frame = +2
Query: 2 IIINTYLSPQGKYNLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALEL 181 I + YLS K+ ++ NIW+K KS EA+ + F + + + +N TF AL L Sbjct: 382 IFVQVYLSSADKFGIIKNIWIKMKSYEAIQSIFQKSESQSKNVSAAD-LNADTFHRALSL 440
Query: 182 VPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTALIAPLK 361 PE R+KF + GKKLRF+ED+V+KSS Q+WIDSD+I+KPAEDG +V+VQST +I P+ Sbjct: 441 TPEVFRRKFYECGKKLRFIEDLVVKSSGQDWIDSDVIMKPAEDGLDFVDVQSTVIITPVS 500
Query: 362 GMPARFSGMHYLKLLTAARALSWIYEDSFR 451 G+ +RF+GMHY+K+L+ A+ + WI DSF+ Sbjct: 501 GVASRFAGMHYMKILSVAKCMEWIMLDSFQ 530
>tr|A9RWM0|A9RWM0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71504 PE=4 SV=1 Length = 483
Score = 85.1 bits (209), Expect = 3e-15 Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 6/134 (4%) Frame = +2
Query: 2 IIINTYLSPQGKYNLLSNIWVKCKSREAVIAAF---DSDKKDEEP---LFIGTYINERTF 163 + I TYLSP K + N+WVK KSREA++ F D +P L +G IN +TF Sbjct: 301 VFITTYLSPAEKQGIC-NLWVKMKSREALLPHFGAGDDAGARYDPAAILTLGKEINTKTF 359
Query: 164 TEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYVNVQSTA 343 AL LV E R+KF + GKKL+F++D +++ SA WI+SDL P E G V V++ Sbjct: 360 DAALSLVSEDAREKFMKMGKKLQFVDDSLMQ-SAVSWIESDLSFTPTESGD--VEVRTPI 416
Query: 344 LIAPLKGMPARFSG 385 L +P P RF+G Sbjct: 417 LYSPANINP-RFAG 429
>tr|B6PM14|B6PM14_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_108576 PE=4 SV=1 Length = 571
Score = 56.6 bits (135), Expect = 1e-06 Identities = 36/102 (35%), Positives = 51/102 (50%) Frame = +2
Query: 146 INERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYV 325 +N+ F A +++Q+G +L F +D + KS+ W+ L DG+ V Sbjct: 471 LNQMAFQIASTAASTVAMARYQQKGHQLTFADDEM-KSTGSGWLSGALTFDDQGDGT--V 527
Query: 326 NVQSTALIAPLKGMPARFSGMHYLKLLTAARALSWIYEDSFR 451 V S AL+ L F GMHY KLL+ RAL +IY DS R Sbjct: 528 KVTSPALVTSLDAWFG-FDGMHYCKLLSPFRALEYIYTDSLR 568
>tr|B6LYB4|B6LYB4_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_75999 PE=4 SV=1 Length = 505
Score = 49.7 bits (117), Expect = 1e-04 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 17/119 (14%) Frame = +2
Query: 146 INERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWIDSDLIIKPAEDGSQYV 325 +N+ F A +++Q+G +L F +D + KS+ W+ L + DG+ + Sbjct: 386 LNQMAFQIASTAASTVAMARYQQKGHQLTFADDEM-KSTGSGWLSGALTFEDQGDGTVKI 444
Query: 326 N-----------------VQSTALIAPLKGMPARFSGMHYLKLLTAARALSWIYEDSFR 451 V S AL+ L F GMHY KLL+ RAL +IY DS R Sbjct: 445 QCIYHKARAITYRTNALQVTSPALVTSLDAWFG-FDGMHYCKLLSPFRALEYIYTDSLR 502
>tr|Q3JBY3|Q3JBY3_NITOC N-6 DNA methylase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_1159 PE=4 SV=1 Length = 238
Score = 36.2 bits (82), Expect = 1.4 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Frame = +2
Query: 41 NLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQ-- 214 +L+++ W + A +A F+ K+++ L I Y++ TF E E+ +AV+++ EQ Sbjct: 162 SLINDQWSIINEKFAHVAGFEEIKENDFNLNIPRYVD--TFEEEEEIDIQAVQREIEQLE 219
Query: 215 ------RGKKLRFLEDMVI 253 RGK R L+DMV+ Sbjct: 220 AELAEVRGKMDRLLKDMVV 238
>tr|B6C0Y7|B6C0Y7_9GAMM N-6 DNA Methylase superfamily OS=Nitrosococcus oceani AFC27 GN=NOC27_578 PE=4 SV=1 Length = 244
Score = 36.2 bits (82), Expect = 1.4 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Frame = +2
Query: 41 NLLSNIWVKCKSREAVIAAFDSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQ-- 214 +L+++ W + A +A F+ K+++ L I Y++ TF E E+ +AV+++ EQ Sbjct: 168 SLINDQWSIINEKFAHVAGFEEIKENDFNLNIPRYVD--TFEEEEEIDIQAVQREIEQLE 225
Query: 215 ------RGKKLRFLEDMVI 253 RGK R L+DMV+ Sbjct: 226 AELAEVRGKMDRLLKDMVV 244
>tr|B6ADN3|B6ADN3_9CRYT Putative uncharacterized protein OS=Cryptosporidium muris RN66 GN=CMU_008150 PE=4 SV=1 Length = 5879
Score = 35.4 bits (80), Expect = 2.3 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Frame = -2
Query: 312 PSSAGFIIKSLSIHSCA----DDLITISSKNRSFLPRCSNFCLTASGTSSKASVKVLSLI 145 PSS +II+ H C +++++ S R +C F A+G S +L++ Sbjct: 1793 PSSELYIIRKHLHHICMVTIIPNILSLKSSCRRMAQKCLVFLANATGVSVAT---LLNIS 1849
Query: 144 YVPIKRGSSSFLSLSNAAITASRLLHFTHMLLSRL 40 + GSSS LS S++ IT++ +L +LLSRL Sbjct: 1850 FTSGNEGSSS-LSTSSSCITSNTIL---QLLLSRL 1880
>tr|B4JV77|B4JV77_DROGR GH17417 OS=Drosophila grimshawi GN=GH17417 PE=4 SV=1 Length = 672
Score = 35.4 bits (80), Expect = 2.3 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -1
Query: 442 IFIYPA---QSSCCCEKLEIMHTRKSGWHSFQRRNQCSRLNINILTTILCWLYYQVTVYP 272 I+++P ++C C+++ M++ KS WHSF S L +N++ TI L T YP Sbjct: 303 IYVFPVLNIAAACACQRMW-MNSAKSAWHSFLALIAASHLLVNVIITIFL-LVVSGTNYP 360
>tr|Q22SD1|Q22SD1_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00006050 PE=4 SV=1 Length = 8668
Score = 35.0 bits (79), Expect = 3.0 Identities = 16/65 (24%), Positives = 36/65 (55%) Frame = +2
Query: 101 DSDKKDEEPLFIGTYINERTFTEALELVPEAVRQKFEQRGKKLRFLEDMVIKSSAQEWID 280 D K++++ L I TY+N+ + +E + + + + E + KK++F +++I ++ D Sbjct: 2793 DFSKQEQQILIINTYLNDSKCKQQIEFIMQKIDELSEYKNKKIQFQLNIIILVRVEDLYD 2852
Query: 281 SDLII 295 II Sbjct: 2853 MIPII 2857
>tr|B4K8U1|B4K8U1_DROMO GI22746 OS=Drosophila mojavensis GN=GI22746 PE=4 SV=1 Length = 619
Score = 35.0 bits (79), Expect = 3.0 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = -1
Query: 442 IFIYPA---QSSCCCEKLEIMHTRKSGWHSFQRRNQCSRLNINILTTILCWLYYQVTVYP 272 I+++P ++C C +L M++ KS WHSF S L +N+L TI L T YP Sbjct: 303 IYVFPVLNIAAACGCHRLW-MNSAKSAWHSFLALIAASHLLVNVLITIFL-LVVSGTNYP 360
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