BP912403 |
Clone id |
YMU001_000018_F06 |
Library |
YMU01 |
Length |
462 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000018_F06. |
Accession |
BP912403 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGGAAGACATGAATTCGGAGATTTTAAGGGCACTATCCTGCAGATGCTTGGCTTGTATGG TTATGAGAGAACAATTCTGTTAACTGCAAAGCAGGTGGTGGAGGATGATATGTTTCATAA GCTCAGTATTTACAAGAGACGGGTGTCTCGAGGTTATGCACCATGCAGCTCAATGTGTTG TGTTTGCAAACAAAGACTAAATGGGAGTGAAGCCTCTGATGGTGGAAAGATGGGTGGTCT GAGGTTCAGGACAGAGGAAAAATCTGCAACTGTCTCAGTTCGACATTCGCCGTCAACAAG AGGGACAAACTCTGTGATGATTTTTTCATGTGGACATGCAGCACATTCTAGCTGTATTAA CCCGGATGTAAATAGGATACCAGAGTTTGTAAATTGTCCTCACTGTCTGCCTAAAATTAG CCTGTCCAACCTACCAAGTGGAACGAGGACGCATCATTGAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0P5W1 |
Definition |
sp|Q0P5W1|VPS8_MOUSE Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus |
Align length |
119 |
Score (bit) |
54.3 |
E-value |
2.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TAB8 |
Definition |
tr|A9TAB8|A9TAB8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
147 |
Score (bit) |
100.0 |
E-value |
5.0e-20 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912403|Adiantum capillus-veneris mRNA, clone: YMU001_000018_F06. (462 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TAB8|A9TAB8_PHYPA Predicted protein OS=Physcomitrella paten... 100 5e-20 tr|A7PXT4|A7PXT4_VITVI Chromosome chr15 scaffold_37, whole genom... 99 1e-19 tr|Q0WMD8|Q0WMD8_ARATH Putative uncharacterized protein OS=Arabi... 86 9e-16 tr|B4FE02|B4FE02_MAIZE Putative uncharacterized protein OS=Zea m... 82 1e-14 tr|A9RD04|A9RD04_PHYPA Predicted protein OS=Physcomitrella paten... 80 5e-14 tr|Q6Z706|Q6Z706_ORYSJ Os02g0124700 protein OS=Oryza sativa subs... 79 1e-13 tr|B8AGY5|B8AGY5_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|Q54EK0|Q54EK0_DICDI RING Zn finger-containing protein OS=Dict... 61 2e-08 tr|O15715|O15715_DICDI Vps8 (Fragment) OS=Dictyostelium discoide... 61 2e-08 tr|A7SZ22|A7SZ22_NEMVE Predicted protein (Fragment) OS=Nematoste... 61 3e-08 tr|A7SUW9|A7SUW9_NEMVE Predicted protein OS=Nematostella vectens... 61 3e-08 tr|A3A2N1|A3A2N1_ORYSJ Putative uncharacterized protein OS=Oryza... 60 5e-08 tr|B6PNK0|B6PNK0_BRAFL Putative uncharacterized protein (Fragmen... 59 2e-07 tr|A8KBH1|A8KBH1_XENTR LOC100127670 protein (Fragment) OS=Xenopu... 55 2e-06 tr|Q8CIG5|Q8CIG5_MOUSE Vps8 protein OS=Mus musculus GN=Vps8 PE=2... 54 3e-06 tr|A8K8Q8|A8K8Q8_HUMAN cDNA FLJ78757 OS=Homo sapiens PE=2 SV=1 53 7e-06 tr|Q1LY85|Q1LY85_DANRE Novel protein (Fragment) OS=Danio rerio G... 53 9e-06 tr|Q6CSR5|Q6CSR5_KLULA KLLA0C18491p OS=Kluyveromyces lactis GN=K... 52 2e-05 tr|Q4SZE0|Q4SZE0_TETNG Chromosome undetermined SCAF11697, whole ... 51 3e-05 tr|A1L282|A1L282_DANRE Si:dkey-24b15.1 OS=Danio rerio GN=si:dkey... 51 3e-05 tr|B4H1B1|B4H1B1_DROPE GL22513 OS=Drosophila persimilis GN=GL225... 47 6e-04 tr|Q7QJM3|Q7QJM3_ANOGA AGAP007578-PA OS=Anopheles gambiae GN=AGA... 46 8e-04 tr|Q29FH3|Q29FH3_DROPS GA10107 OS=Drosophila pseudoobscura pseud... 46 8e-04 tr|B3RS88|B3RS88_TRIAD Putative uncharacterized protein OS=Trich... 45 0.002 tr|B0VZT1|B0VZT1_CULQU Putative uncharacterized protein OS=Culex... 44 0.003 tr|Q2UKF9|Q2UKF9_ASPOR Vacuolar assembly/sorting protein VPS8 OS... 43 0.007 tr|B8N1D1|B8N1D1_ASPFL Golgi complex component (Vps8), putative ... 43 0.007 tr|B6H1Z7|B6H1Z7_PENCH Pc13g03460 protein OS=Penicillium chrysog... 43 0.007 tr|Q382Q4|Q382Q4_9TRYP Ubiquitin ligase, putative OS=Trypanosoma... 42 0.015 tr|A8N6Z3|A8N6Z3_COPC7 Putative uncharacterized protein OS=Copri... 42 0.015
>tr|A9TAB8|A9TAB8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_90137 PE=4 SV=1 Length = 2123
Score = 100 bits (248), Expect = 5e-20 Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 2/147 (1%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G H F DF+ TIL ML YGYERTIL TAK + E+D F+ + +R + GYA SS+CC Sbjct: 1848 GSHPFQDFRPTILNMLSAYGYERTILRTAKHLTEEDTFYNIYALRRGCAHGYAALSSICC 1907
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCIN 361 +C L + E ++V + ++R +N+ I+ CGHAAH C+ Sbjct: 1908 ICGLGLEDDTLQGHTRSTAENSHGESTKGVMAV--ATTSRSSNAFSIYFCGHAAHILCVV 1965
Query: 362 PDVN--RIPEFVNCPHCLPKISLSNLP 436 D + P CP C K+ S+ P Sbjct: 1966 DDGSHKEDPSLPGCPVCSLKVKSSSSP 1992
>tr|A7PXT4|A7PXT4_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026165001 PE=4 SV=1 Length = 953
Score = 99.0 bits (245), Expect = 1e-19 Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G EFGDFK TIL MLG YG+ER IL TAK ++EDD F+ +S+ K+ S GYAP S +CC Sbjct: 701 GNQEFGDFKVTILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLICC 760
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSC-- 355 +C + +S +S+ +F+CGHA H C Sbjct: 761 ICNCLFTKNSSS------------------------------SSIRVFNCGHATHLQCEL 790
Query: 356 INPDVNRIPEFVNCPHCLPK 415 + + + V CP CLPK Sbjct: 791 LENEASNRSSSVGCPVCLPK 810
>tr|Q0WMD8|Q0WMD8_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 392
Score = 85.9 bits (211), Expect = 9e-16 Identities = 52/146 (35%), Positives = 66/146 (45%), Gaps = 8/146 (5%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G EFGDFK TIL MLG YG+ER IL TAK ++EDD F+ +++ K+ S GYAP S +CC Sbjct: 149 GTQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYSMNLLKKGASHGYAPRSLLCC 208
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCIN 361 +C L T V +F+CGHA H C Sbjct: 209 ICSCPLT------------------------------KTFYALRVRVFNCGHATHLQC-E 237
Query: 362 PDVNRIPEFVN--------CPHCLPK 415 P N + CP C+ K Sbjct: 238 PSENETSTSASSIHVSSSGCPVCMTK 263
>tr|B4FE02|B4FE02_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 297
Score = 82.4 bits (202), Expect = 1e-14 Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G EFGDFK I +ML +Y YE+ IL TAK V+EDD F+ LS+ KR V G+AP + +CC Sbjct: 58 GNQEFGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCC 117
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCIN 361 +C N S + +G ++V +FSCGHA H C + Sbjct: 118 IC----NCSLSKEG--------------------------AISAVRLFSCGHATHLQCES 147
Query: 362 PDV--NRIPEFVNCPHCL 409 + CP CL Sbjct: 148 EQTRSSNQESKEGCPVCL 165
>tr|A9RD04|A9RD04_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64289 PE=4 SV=1 Length = 2010
Score = 80.1 bits (196), Expect = 5e-14 Identities = 43/120 (35%), Positives = 66/120 (55%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G H GDF+ I +L Y YE TIL AKQ+VE+ + H L + R + YA +S CC Sbjct: 1776 GSHPLGDFRAAICNLLSAYTYEFTILGKAKQLVEESLHHSLYMLLRGSTHAYALSNSKCC 1835
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCIN 361 +CK L G +S+ ++ G+ ++ S S S ++ + + +CGHAAH+ CI+ Sbjct: 1836 ICKLELVGVHSSNMNELIGV--------SSSSQSTSTSEVCSDGLQVLTCGHAAHAFCIS 1887
>tr|Q6Z706|Q6Z706_ORYSJ Os02g0124700 protein OS=Oryza sativa subsp. japonica GN=P0575F10.31 PE=4 SV=1 Length = 474
Score = 78.6 bits (192), Expect = 1e-13 Identities = 43/115 (37%), Positives = 57/115 (49%) Frame = +2
Query: 11 EFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCCVCK 190 EFGDFK I +ML +Y YE+ IL TAK V+EDD F+ LS+ KR V G AP + +CC+C Sbjct: 232 EFGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGLAPQTFVCCICN 291
Query: 191 QRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSC 355 L+ A +++ +FSCGHA H C Sbjct: 292 CSLSKESA------------------------------VSAIRVFSCGHATHLQC 316
>tr|B8AGY5|B8AGY5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05666 PE=4 SV=1 Length = 1926
Score = 78.6 bits (192), Expect = 1e-13 Identities = 43/115 (37%), Positives = 57/115 (49%) Frame = +2
Query: 11 EFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCCVCK 190 EFGDFK I +ML +Y YE+ IL TAK V+EDD F+ LS+ KR V G AP + +CC+C Sbjct: 1684 EFGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGLAPQTFVCCICN 1743
Query: 191 QRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSC 355 L+ A +++ +FSCGHA H C Sbjct: 1744 CSLSKESA------------------------------VSAIRVFSCGHATHLQC 1768
>tr|Q54EK0|Q54EK0_DICDI RING Zn finger-containing protein OS=Dictyostelium discoideum GN=vps8 PE=4 SV=1 Length = 1751
Score = 61.2 bits (147), Expect = 2e-08 Identities = 37/152 (24%), Positives = 64/152 (42%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G +E GDFK I M+ +E IL TA +++ DMF + ++SR Y P S C Sbjct: 1515 GGNELGDFKSIITDMMDTCTFETIILKTANDLIQADMFSATQTFVEKLSRAYTPNISKCG 1574
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCIN 361 +C + L+ A ++ + T ++++++ C H HS C+ Sbjct: 1575 MCYRPLS--------------------EAPIAKQQPNHTMALDTLIVYQCNHTFHSECLG 1614
Query: 362 PDVNRIPEFVNCPHCLPKISLSNLPSGTRTHH 457 + CP C + LPS +++ Sbjct: 1615 -------KHKVCPLCSKEKERKKLPSSLTSNN 1639
>tr|O15715|O15715_DICDI Vps8 (Fragment) OS=Dictyostelium discoideum GN=vps8 PE=4 SV=1 Length = 708
Score = 61.2 bits (147), Expect = 2e-08 Identities = 37/152 (24%), Positives = 64/152 (42%) Frame = +2
Query: 2 GRHEFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCC 181 G +E GDFK I M+ +E IL TA +++ DMF + ++SR Y P S C Sbjct: 472 GGNELGDFKSIITDMMDTCTFETIILKTANDLIQADMFSATQTFVEKLSRAYTPNISKCG 531
Query: 182 VCKQRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCIN 361 +C + L+ A ++ + T ++++++ C H HS C+ Sbjct: 532 MCYRPLS--------------------EAPIAKQQPNHTMALDTLIVYQCNHTFHSECLG 571
Query: 362 PDVNRIPEFVNCPHCLPKISLSNLPSGTRTHH 457 + CP C + LPS +++ Sbjct: 572 -------KHKVCPLCSKEKERKKLPSSLTSNN 596
>tr|A7SZ22|A7SZ22_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g138669 PE=4 SV=1 Length = 1278
Score = 60.8 bits (146), Expect = 3e-08 Identities = 39/132 (29%), Positives = 57/132 (43%) Frame = +2
Query: 11 EFGDFKGTILQMLGLYGYERTILLTAKQVVEDDMFHKLSIYKRRVSRGYAPCSSMCCVCK 190 +FG+ K IL ML Y YE T+L T Q++ D+ +S + +RG AP S++C +C Sbjct: 1067 KFGEIKELILGMLNTYNYESTLLKTTNQLLAKDLHSSMSALRSNRNRGLAPVSTVCGMC- 1125
Query: 191 QRLNGSEASDGGKMGGLRFRTEEKSATVSVRHSPSTRGTNSVMIFSCGHAAHSSCINPDV 370 + S +SD R T V I CGH H+ C+ Sbjct: 1126 ---HHSSSSD-------------------------ARKTGKVAILRCGHMFHTECLT-GT 1156
Query: 371 NRIPEFVNCPHC 406 + + V CP C Sbjct: 1157 SDVTTTVICPFC 1168
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