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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912344
Clone id YMU001_000018_A06
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTGTTTTTTTTTTTTTAATTGCAATGCACTCATTAATTGAGACACTTAGTCATTATAT
ATGGTCATATCAGAATTACAGATTGCTAGACCACCAAATACTGCTTATTGTACATCGTAC
AAAGATCAAAAATGGTGACTCCAATTCCACCACGTTGAGAGAGCTACATAGAATCTATGT
ATGTGACAACTGTGGTGAACAAGGGCTGGATTGCTAAATGAAAACTACTCCAATCTAGCC
TGGACCTCCTCTTTAGAAGACTCACCAATTAACCCCTGAAGACTCACAGATCCTCTCTAC
AAAAACTAGACATTGTGTTCAAACACAATACTGGACTTCATGAAGCACGACTCGCAGGCC
ATACACCAAACTTGACATTCCAATGTCACTCCAATGTCACCATCTACGATGCGTGCCCCA
AAATCTCTGCTTCTGGTGGCCGGCTGCTTCGTTCTCGTGCTAATGAAGCACCCACCAACT
CATATA
■■Homology search results ■■ -
sp_hit_id Q96JB6
Definition sp|Q96JB6|LOXL4_HUMAN Lysyl oxidase homolog 4 OS=Homo sapiens
Align length 53
Score (bit) 30.0
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912344|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_A06.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96JB6|LOXL4_HUMAN Lysyl oxidase homolog 4 OS=Homo sapiens GN...    30   5.2  
sp|Q97B98|FEN_THEVO Flap structure-specific endonuclease OS=Ther...    30   5.2  
sp|Q89AZ6|FLIJ_BUCBP Flagellar fliJ protein OS=Buchnera aphidico...    30   6.8  
sp|Q8MJ24|LOXL4_BOVIN Lysyl oxidase homolog 4 OS=Bos taurus GN=L...    29   8.9  

>sp|Q96JB6|LOXL4_HUMAN Lysyl oxidase homolog 4 OS=Homo sapiens
           GN=LOXL4 PE=1 SV=1
          Length = 756

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +2

Query: 50  YQNYRLLDHQILLIVHRTKIKNGDSNSTTLRE------LHRIYVCDNCGEQGL 190
           Y +  +  H  LL ++ +K+  G   S  L +      L R Y C N GEQG+
Sbjct: 614 YHSIEVFTHYDLLTLNGSKVAEGHKASFCLEDTNCPTGLQRRYACANFGEQGV 666


>sp|Q97B98|FEN_THEVO Flap structure-specific endonuclease
           OS=Thermoplasma volcanium GN=fen PE=3 SV=1
          Length = 335

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 291 DIVFKHNTGLHEAR---LAGHTPNLTFQCHSNVTIYDACPKISASG 419
           DIV  H T L +      A  T N+ +Q  SNV  YD  P + +SG
Sbjct: 7   DIVVSHQTSLKDQANQVFAIDTYNILYQLLSNVRQYDGTPLMDSSG 52


>sp|Q89AZ6|FLIJ_BUCBP Flagellar fliJ protein OS=Buchnera aphidicola
           subsp. Baizongia pistaciae GN=fliJ PE=3 SV=1
          Length = 155

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 350 KLDIPMSLQCHHLRCVPQNLCFW 418
           +LDI MS QC +L+C+ Q L F+
Sbjct: 39  QLDILMSYQCEYLKCLDQELKFY 61


>sp|Q8MJ24|LOXL4_BOVIN Lysyl oxidase homolog 4 OS=Bos taurus
           GN=LOXL4 PE=2 SV=1
          Length = 757

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +2

Query: 50  YQNYRLLDHQILLIVHRTKIKNGDSNSTTLRE------LHRIYVCDNCGEQGL 190
           Y +  +  H  LL ++ +K+  G   S  L +      + R Y C N GEQG+
Sbjct: 615 YHSIEVFTHYDLLTLNGSKVAEGHKASFCLEDTNCPTGMQRRYACANFGEQGV 667
tr_hit_id B1R1N1
Definition tr|B1R1N1|B1R1N1_CLOBU Transketolase OS=Clostridium butyricum 5521
Align length 39
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912344|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_A06.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1R1N1|B1R1N1_CLOBU Transketolase OS=Clostridium butyricum 55...    37   0.38 
tr|Q6LP59|Q6LP59_PHOPR Putative uncharacterized protein OS=Photo...    33   7.2  

>tr|B1R1N1|B1R1N1_CLOBU Transketolase OS=Clostridium butyricum 5521
           GN=tkt PE=4 SV=1
          Length = 663

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 339 GHTPNLTFQCHSNVTIYDACPKISASGGRLLRSRANEAP 455
           GHTP        N+ +YD CPK +  GG +++    E P
Sbjct: 510 GHTPTSLVLTRQNLPVYDGCPKRALKGGYIIKDSKKETP 548


>tr|Q6LP59|Q6LP59_PHOPR Putative uncharacterized protein
           OS=Photobacterium profundum GN=PBPRA2537 PE=4 SV=1
          Length = 231

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 5   AMHSLIETLSHYIWSYQNYRLLDHQILLIVHRTKIKNGDSNSTTLRELHR 154
           A+  L + +  ++ SY  Y LLD ++L +VH  KI     +S+ ++ L R
Sbjct: 19  AIGPLSKLIDRFVESYIGYSLLDIEMLEVVHEAKITEVSKDSSIIKPLSR 68