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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912328
Clone id YMU001_000017_G12
Library
Length 442
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAAAAAAGTGAGCTATTAGAAAAAGACAACGCAGGCAGTGATATAATGCGAGGGTTGCA
TGTTGATGGTGCACATGAGGCTCGCAATTGCTGTTGACGCCAATGCGCGAGTGTAGGGCC
CACCAAAATTGGTGTGGATGATGTTATATGTGACGTATTGCATGCAACCCTCTTAGTGTG
AGGGTGTTTTACAAAAGGATAAGGCAGGGTGATGACACAACACTGCAACTCGGGTGCCGA
TGAGCATCATAGATAACACTGGCCGTTCTGGTGGGCAAGACGGCTAGCAGGGCTGTTGTG
GATAGTAGGCTCCTTATGATGTTGCCGATGGAGCCTTGGCGAGAATGGGAGGTAGGCTAA
CTGGTGGGTAGATGAGGTAGGCTAACTTGGCGAGAATGGGAGGTAGGCTAACTGGTGGGT
AGATGGGAGGTAGGCTAATTAT
■■Homology search results ■■ -
sp_hit_id O88563
Definition sp|O88563|MRP3_RAT Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus
Align length 34
Score (bit) 31.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912328|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_G12.
         (442 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88563|MRP3_RAT Canalicular multispecific organic anion trans...    31   2.0  
sp|P57999|ZAN_RABIT Zonadhesin (Fragment) OS=Oryctolagus cunicul...    30   4.5  
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l...    30   5.7  
sp|Q5TDP6|LGSN_HUMAN Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1         30   5.9  
sp|P91535|SRG20_CAEEL Serpentine receptor class gamma-20 OS=Caen...    29   9.8  
sp|Q9CBW6|NPD_MYCLE NAD-dependent deacetylase OS=Mycobacterium l...    29   9.8  
sp|P50089|YG51_YEAST Uncharacterized protein YGR237C OS=Saccharo...    29   10.0 
sp|P42044|HEMH_CUCSA Ferrochelatase-2, chloroplastic OS=Cucumis ...    29   10.0 

>sp|O88563|MRP3_RAT Canalicular multispecific organic anion
           transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1
          Length = 1522

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 215 TQHCNSGADEHHR*HWPFWWARRLAGLLWIVGSL 316
           T  C++ +    R H P+WW   LAGL+++  ++
Sbjct: 327 THSCSASSSGLFRPHGPYWWGFLLAGLMFVSSTM 360


>sp|P57999|ZAN_RABIT Zonadhesin (Fragment) OS=Oryctolagus cuniculus
           GN=ZAN PE=2 SV=2
          Length = 2282

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
 Frame = -2

Query: 243 SSAPELQCCVITLPYPFVKHPHTKRVACNTSHITSSTPILVG-PTLAHWRQ-------QQ 88
           ++ P      +T   P    P T   +   S  T+ +P  V  P  AH+         + 
Sbjct: 459 TTPPTTARSTLTSLEPTTHTPSTSLTSTTLSTTTTPSPTTVSCPANAHYESCACPASCKH 518

Query: 87  LRASCAPSTCNPRIISLPALSFSNSS 10
            +ASC P  C P  +  P L FSN+S
Sbjct: 519 PKASCKPP-CQPGCVCDPGLVFSNNS 543


>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium
           lophurae PE=4 SV=1
          Length = 351

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 164 HAIRHI*HHP-HQFWWALHSRIGVNSNCEPHVHHQHATLALYH 39
           H   H  HH  H   W  H  +G + +  PH HH H     +H
Sbjct: 145 HEEHHHHHHAAHHHPWFHHHHLGYHHHHAPHHHHHHHHAPHHH 187


>sp|Q5TDP6|LGSN_HUMAN Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1
          Length = 509

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
 Frame = -2

Query: 177 TKRVACNTSHITSSTPILVGPTLAHWRQ-QQLRAS------------C---APSTCNPRI 46
           T RV C+T  +T   P+L  P     RQ   L+AS            C    P   N +I
Sbjct: 165 TARVICDTFTVTGE-PLLTSPRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKI 223

Query: 45  ISLPALSFSNS 13
           IS PAL+F N+
Sbjct: 224 ISFPALTFLNN 234


>sp|P91535|SRG20_CAEEL Serpentine receptor class gamma-20
           OS=Caenorhabditis elegans GN=srg-20 PE=2 SV=4
          Length = 346

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
 Frame = -3

Query: 125 WWALHSRIGVNSNCEPH-VHHQHAT-------LALYHCLRCLFLIAHFF 3
           W  L SR+ VN N     V+++ A        L L+HC+ CLFL+  FF
Sbjct: 174 WNILVSRVYVNPNGAGFSVNYRDAVAWANISFLHLFHCIPCLFLMIVFF 222


>sp|Q9CBW6|NPD_MYCLE NAD-dependent deacetylase OS=Mycobacterium
           leprae GN=npdA PE=3 SV=1
          Length = 237

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 116 LHSRIGVNSNCEPHVHHQHATLALYHCLRC 27
           LH R G        VHH H +L  +HC RC
Sbjct: 91  LHERAGSTP-----VHHLHGSLFKFHCARC 115


>sp|P50089|YG51_YEAST Uncharacterized protein YGR237C
           OS=Saccharomyces cerevisiae GN=YGR237C PE=1 SV=1
          Length = 785

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 270 QNGQCYL*CSSAPELQCCVITLPYPFVKHPHTKRVACNTSH-ITSSTPILVGPTLA 106
           +NG   +  ++ PE +  + TL Y   +    +R+  NTS  +T+++  L+GP L+
Sbjct: 362 RNGDHLVIITTIPEFEAKIDTLAYKEKRRHRLERMTSNTSESMTTASHSLIGPDLS 417


>sp|P42044|HEMH_CUCSA Ferrochelatase-2, chloroplastic OS=Cucumis
           sativus GN=HEMH PE=2 SV=1
          Length = 514

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 29  NAGSDIMRGLHVDGAHEARNCC*RQCASVGPTKIG 133
           N   D+++GLH+ G  E ++   + C SVG   +G
Sbjct: 66  NGDRDVIQGLHLSGPIEKKSRLGQACCSVGTFTVG 100
tr_hit_id B4I184
Definition tr|B4I184|B4I184_DROSE GM18501 OS=Drosophila sechellia
Align length 66
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912328|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_G12.
         (442 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4I184|B4I184_DROSE GM18501 OS=Drosophila sechellia GN=GM1850...    34   4.1  
tr|Q63N68|Q63N68_BURPS Putative O-acetyl transferase (O-antigen-...    33   5.4  
tr|Q3JH33|Q3JH33_BURP1 Putative O-acetyl transferase (O-antigen-...    33   5.4  
tr|A3P2Q4|A3P2Q4_BURP0 Putative lipopolysaccharide biosynthesis ...    33   5.4  
tr|A3NH49|A3NH49_BURP6 Galactoside O-acetyltransferase OS=Burkho...    33   5.4  
tr|B7CX35|B7CX35_BURPS Putative lipopolysaccharide biosynthesis ...    33   5.4  
tr|B2KJA5|B2KJA5_BURPS Putative lipopolysaccharide biosynthesis ...    33   5.4  
tr|B1N1L5|B1N1L5_BURPS Putative acetyltransferase OS=Burkholderi...    33   5.4  
tr|A8KHI6|A8KHI6_BURPS Putative acetyltransferase OS=Burkholderi...    33   5.4  
tr|A8EB87|A8EB87_BURPS Putative acetyltransferase OS=Burkholderi...    33   5.4  
tr|A4LS99|A4LS99_BURPS Putative acetyltransferase OS=Burkholderi...    33   5.4  
tr|B0WB34|B0WB34_CULQU Latent nuclear antigen OS=Culex quinquefa...    33   7.0  
tr|Q6NU06|Q6NU06_XENLA MGC81364 protein OS=Xenopus laevis GN=nlk...    33   9.2  
tr|B0JZD9|B0JZD9_XENTR Nlk protein OS=Xenopus tropicalis GN=nlk ...    33   9.2  

>tr|B4I184|B4I184_DROSE GM18501 OS=Drosophila sechellia GN=GM18501
           PE=4 SV=1
          Length = 492

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -2

Query: 246 CSSAPELQCCVITLPYPFVKHPHTKRVACNTSHITSSTPILVGPTLAHWRQQQLRASCAP 67
           C+ + E    + + P P  +   T+   C+T   T +TP    PT    +     ++CAP
Sbjct: 140 CTCSEEPSTAIPSSPCPCTEETTTQTPTCSTQG-TPTTPCTCAPTTTTTKCTTTTSTCAP 198

Query: 66  STCNPR 49
           +T  PR
Sbjct: 199 TTTTPR 204


>tr|Q63N68|Q63N68_BURPS Putative O-acetyl transferase
           (O-antigen-related) OS=Burkholderia pseudomallei
           GN=BPSS0427 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|Q3JH33|Q3JH33_BURP1 Putative O-acetyl transferase
           (O-antigen-related) OS=Burkholderia pseudomallei (strain
           1710b) GN=BURPS1710b_A1969 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|A3P2Q4|A3P2Q4_BURP0 Putative lipopolysaccharide biosynthesis
           O-acetyl transferase OS=Burkholderia pseudomallei
           (strain 1106a) GN=BURPS1106A_A0578 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|A3NH49|A3NH49_BURP6 Galactoside O-acetyltransferase
           OS=Burkholderia pseudomallei (strain 668)
           GN=BURPS668_A0671 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|B7CX35|B7CX35_BURPS Putative lipopolysaccharide biosynthesis
           O-acetyl transferase OS=Burkholderia pseudomallei 576
           GN=BUC_4753 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|B2KJA5|B2KJA5_BURPS Putative lipopolysaccharide biosynthesis
           O-acetyl transferase OS=Burkholderia pseudomallei 1655
           GN=BURPS1655_0437 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|B1N1L5|B1N1L5_BURPS Putative acetyltransferase OS=Burkholderia
           pseudomallei S13 GN=BURPSS13_L0071 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|A8KHI6|A8KHI6_BURPS Putative acetyltransferase OS=Burkholderia
           pseudomallei Pasteur 52237 GN=BURPSPAST_D0383 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160


>tr|A8EB87|A8EB87_BURPS Putative acetyltransferase OS=Burkholderia
           pseudomallei 406e GN=BURPS406E_O0137 PE=4 SV=1
          Length = 189

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 41  DIMRGLHVDGAHEARNCC*RQCASVGPTKIGVDDVICD---VLHATLLV*GC 187
           D   G   DGAH A +   R  A V P +IG D  ICD   +L  T L  GC
Sbjct: 109 DHAHGDSADGAHRAMSPARRPLARVEPIRIGDDCWICDGAVILAGTRLAPGC 160