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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912293
Clone id YMU001_000017_D03
Library
Length 320
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCTTCCTTGTCTGCACCCATACTCATAGACCTTGATTCGCTAAGAGCACCATGTTTCGA
ATCTGTTTTGACACTTCCTGATTCCTTTGCTGAAACACCCTCTGATGGAAAATCACCTTT
GATTTTCATCATTACGTCATCATCTGATTGCTCCAAACCATGAATTAGAAGAGAATCTGG
TGGAAGAGATCCTCCTTGAATACCACCAAATTCAATATCCTCATCCAAAATTTCTCCCTC
CTCCACTTCTTCGTCCAATTCATGTCTGCTAGCATACCCTGGCAATCTGCATTCAGGAAT
TTGCTGAGTCTCATTCACGG
■■Homology search results ■■ -
sp_hit_id P0A3X6
Definition sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase OS=Thermosynechococcus vulcanus
Align length 55
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912293|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D03.
         (320 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase OS=Thermosy...    30   2.8  
sp|P0A3X5|CAPP_THEEB Phosphoenolpyruvate carboxylase OS=Thermosy...    30   2.8  
sp|Q7U4M0|CAPP_SYNPX Phosphoenolpyruvate carboxylase OS=Synechoc...    30   2.8  
sp|A9ILJ7|TRUA_BART1 tRNA pseudouridine synthase A OS=Bartonella...    29   6.3  
sp|Q6G1G9|TRUA_BARQU tRNA pseudouridine synthase A OS=Bartonella...    29   6.3  
sp|Q6G547|TRUA_BARHE tRNA pseudouridine synthase A OS=Bartonella...    29   6.3  
sp|A1UUB6|TRUA_BARBK tRNA pseudouridine synthase A OS=Bartonella...    29   6.3  

>sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase
           OS=Thermosynechococcus vulcanus GN=ppc PE=3 SV=1
          Length = 1011

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 154 QTMN*KRIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIPWQSAFRNLLSLIH 318
           Q M   R+WW+   L+  K  +L +    LH+F + + A IP    +R L   +H
Sbjct: 251 QLMEEIRLWWRTDELHQFKPEVLDEVEYTLHYFKEVIFAVIP--KLYRRLEQSLH 303


>sp|P0A3X5|CAPP_THEEB Phosphoenolpyruvate carboxylase
           OS=Thermosynechococcus elongatus (strain BP-1) GN=ppc
           PE=3 SV=1
          Length = 1011

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 154 QTMN*KRIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIPWQSAFRNLLSLIH 318
           Q M   R+WW+   L+  K  +L +    LH+F + + A IP    +R L   +H
Sbjct: 251 QLMEEIRLWWRTDELHQFKPEVLDEVEYTLHYFKEVIFAVIP--KLYRRLEQSLH 303


>sp|Q7U4M0|CAPP_SYNPX Phosphoenolpyruvate carboxylase
           OS=Synechococcus sp. (strain WH8102) GN=ppc PE=3 SV=1
          Length = 1010

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 172 RIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIP 279
           R+WW+   L+  K  +L +  S LH+F Q +  ++P
Sbjct: 241 RLWWRTDELHQFKPTVLDEVDSTLHYFQQVLFEAMP 276


>sp|A9ILJ7|TRUA_BART1 tRNA pseudouridine synthase A OS=Bartonella
           tribocorum (strain CIP 105476 / IBS 506) GN=truA PE=3
           SV=1
          Length = 247

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 160 MN*KRIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIPWQSAFRNL 303
           +N KR+WW    LN    +   Q     H F  F SA    +S  R L
Sbjct: 126 LNAKRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTL 173


>sp|Q6G1G9|TRUA_BARQU tRNA pseudouridine synthase A OS=Bartonella
           quintana GN=truA PE=3 SV=1
          Length = 247

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 160 MN*KRIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIPWQSAFRNL 303
           +N KR+WW    LN    +   Q     H F  F SA    +S  R L
Sbjct: 126 LNIKRVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPIRTL 173


>sp|Q6G547|TRUA_BARHE tRNA pseudouridine synthase A OS=Bartonella
           henselae GN=truA PE=3 SV=1
          Length = 247

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 160 MN*KRIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIPWQSAFRNL 303
           +N KR+WW    LN    +   Q     H F  F SA    +S  R L
Sbjct: 126 LNTKRVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPIRTL 173


>sp|A1UUB6|TRUA_BARBK tRNA pseudouridine synthase A OS=Bartonella
           bacilliformis (strain ATCC 35685 / KC583) GN=truA PE=3
           SV=1
          Length = 247

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 160 MN*KRIWWKRSSLNTTKFNILIQNFSLLHFFVQFMSASIPWQSAFRNL 303
           +N KR+WW    LN    +   Q     H F  F SA    +S  R L
Sbjct: 126 LNAKRVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKSPIRTL 173
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912293|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_D03.
         (320 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******