BP912285
Clone id YMU001_000017_C06
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATAACACTTCTCCGATAGCTTGCAACTCTTTTGGTTTCACAATCAAGGTATCCAAGTGAC
AACATTCCAAATGGAATTCCCTTCAAGAACTATCCGTATTTTCAAAGTATCTCGTACTTA
ACATGGTTCTAAACGAAAGCAGTGCCATTCTCGATACTTGGCTTACATACTGGCTAAGGT
ACTACTGAGCACACCCATTTGTCTCTGCTCTTTGAATTGACCTGGTTTCCCATCTTGGAA
GCGTAGCAACATAACAATGCACACTCCATATCCACATCCATTTGCACCAAGTCGGTGACT
AGGGCATGCCCCATCACCTCCACCATGCTCATCAACACACTAAGCTTACATGCTCGTCAT
CATTAGGAAATCTACTTCCTAAGCACTATTGTACCATGAGAACCAACCCGTGATGGTAAC
TAGGGCAATGCCTATCTCTCTCTTTAGATTCTAGATGAGTGCCTCTATCACGTGATAGCT
ATTTGAATTAAGTACATATTTATAGCTACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTGGTCTCTCT
■■Homology search results ■■ -
sp_hit_id P93329
Definition sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula
Align length 86
Score (bit) 31.6
E-value 2.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912285|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C06.
(554 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=... 32 2.7
sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS... 31 4.6
sp|P08411|POLN_SFV Non-structural polyprotein OS=Semliki forest ... 30 7.9
sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1,... 30 7.9

>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula
GN=ENOD20 PE=3 SV=1
Length = 268

Score = 31.6 bits (70), Expect = 2.7
Identities = 30/86 (34%), Positives = 39/86 (45%)
Frame = +2

Query: 77 FPSRTIRIFKVSRT*HGSKRKQCHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNIT 256
+ T+ + K + H K+ H R L LA V++ P+ L S P P RS+
Sbjct: 93 YDGNTMVVLKKTGIHHFISGKKRHCR-LGLKLAVVVMVAPV-LSSPPPPPSPPTPRSS-- 148

Query: 257 MHTPYPHPFAPSR*LGHAPSPPPCSS 334
TP PHP P R L PSP P S
Sbjct: 149 --TPIPHP--PRRSLPSPPSPSPSPS 170


>sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C
OS=Saccharomyces cerevisiae GN=YHR217C PE=5 SV=1
Length = 153

Score = 30.8 bits (68), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2

Query: 233 SWKRSNITMHTPYPHPF----APSR*LGHAPSPPPCSSTH 340
S + S+I +HTP+PHP P+ H P+P P H
Sbjct: 11 SMQYSDIYIHTPHPHPHPHPHTPTHTHPHTPTPTPHPHPH 50


>sp|P08411|POLN_SFV Non-structural polyprotein OS=Semliki forest
virus PE=1 SV=2
Length = 2432

Score = 30.0 bits (66), Expect = 7.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1

Query: 253 NNAHSISTSICTKSVTRACPITSTMLINTL 342
N H+I T +C KS++R C T +++TL
Sbjct: 832 NFNHNICTEVCHKSISRRCTRPVTAIVSTL 861


>sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1,
chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2
Length = 371

Score = 30.0 bits (66), Expect = 7.9
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1

Query: 250 HNNAHSISTSICTKSVTRACPITSTMLIN 336
H++ H +SI TKS +R+CPIT T I+
Sbjct: 13 HHHNHHHPSSILTKSRSRSCPITLTKPIS 41


tr_hit_id Q8S7T6
Definition tr|Q8S7T6|Q8S7T6_ORYSJ Putative uncharacterized protein OSJNBb0005J14.5 (Fragment) OS=Oryza sativa subsp. japonica
Align length 62
Score (bit) 37.0
E-value 0.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912285|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_C06.
(554 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8S7T6|Q8S7T6_ORYSJ Putative uncharacterized protein OSJNBb00... 37 0.70
tr|Q8S6Z2|Q8S6Z2_ORYSJ Putative polyprotein OS=Oryza sativa subs... 37 0.70
tr|Q7G209|Q7G209_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.70
tr|B4PTU0|B4PTU0_DROYA GE25345 OS=Drosophila yakuba GN=GE25345 P... 35 2.0
tr|Q2QRD9|Q2QRD9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 35 2.7
tr|Q7XSU3|Q7XSU3_ORYSJ OSJNBa0039K24.13 protein OS=Oryza sativa ... 35 3.5
tr|Q2R2V2|Q2R2V2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 35 3.5

>tr|Q8S7T6|Q8S7T6_ORYSJ Putative uncharacterized protein
OSJNBb0005J14.5 (Fragment) OS=Oryza sativa subsp.
japonica GN=OSJNBb0005J14.5 PE=4 SV=1
Length = 519

Score = 37.0 bits (84), Expect = 0.70
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2

Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAPSPP 322
CH+ +L+ ++ + TP + P PS + +H+PYPHP +PS GH P
Sbjct: 201 CHASHLSSHSSRGSVRTP------SGPRTPSSRVPYSPVHSPYPHPVSPSYTPGHTPVAS 254

Query: 323 PC 328
C
Sbjct: 255 SC 256


>tr|Q8S6Z2|Q8S6Z2_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNBa0034L04.35 PE=4 SV=1
Length = 1658

Score = 37.0 bits (84), Expect = 0.70
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2

Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAPSPP 322
CH+ +L+ ++ + TP + P PS + +H+PYPHP +PS GH P
Sbjct: 201 CHASHLSSHSSRGSVRTP------SGPRTPSSRVPYSPVHSPYPHPVSPSYTPGHTPVAS 254

Query: 323 PC 328
C
Sbjct: 255 SC 256


>tr|Q7G209|Q7G209_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g38370 PE=4 SV=1
Length = 1663

Score = 37.0 bits (84), Expect = 0.70
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2

Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAPSPP 322
CH+ +L+ ++ + TP + P PS + +H+PYPHP +PS GH P
Sbjct: 201 CHASHLSSHSSRGSVRTP------SGPRTPSSRVPYSPVHSPYPHPVSPSYTPGHTPVAS 254

Query: 323 PC 328
C
Sbjct: 255 SC 256


>tr|B4PTU0|B4PTU0_DROYA GE25345 OS=Drosophila yakuba GN=GE25345 PE=4
SV=1
Length = 971

Score = 35.4 bits (80), Expect = 2.0
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3

Query: 321 GGDGACPSHRLGANGCGYGVCIVMLLRFQDGKPGQFKEQRQ 199
GG G CPS L +GCG G C RF D KPG + R+
Sbjct: 766 GGGGTCPSMALSGSGCGGGAC-----RF-DSKPGSSRLLRR 800


>tr|Q2QRD9|Q2QRD9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g27900 PE=4 SV=1
Length = 284

Score = 35.0 bits (79), Expect = 2.7
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2

Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAP 313
CH+ +L+ ++ TP CS PS + +++PYPHP +PS GH P
Sbjct: 184 CHASHLSSHSSRGSARTPSGPCS------PSSRAPYSPVYSPYPHPVSPSYTPGHTP 234


>tr|Q7XSU3|Q7XSU3_ORYSJ OSJNBa0039K24.13 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0039K24.13 PE=4 SV=2
Length = 1851

Score = 34.7 bits (78), Expect = 3.5
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2

Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAP 313
CH+ +L+ ++ TP + P PS + M++PYPHP +PS GH P
Sbjct: 184 CHASHLSSHSSRGSARTP------SGPRSPSSRAPYSPMYSPYPHPVSPSYTPGHTP 234


>tr|Q2R2V2|Q2R2V2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g34550 PE=4 SV=1
Length = 622

Score = 34.7 bits (78), Expect = 3.5
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2

Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAP 313
CH+ +L+ ++ TP + P PS + + +++PYPHP +PS GH P
Sbjct: 199 CHASHLSSHSSRGSARTP------SGPRSPSSRAPYLPVYSPYPHPVSPSYTPGHTP 249