BP912285 |
Clone id |
YMU001_000017_C06 |
Library |
YMU01 |
Length |
554 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000017_C06. |
Accession |
BP912285 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATAACACTTCTCCGATAGCTTGCAACTCTTTTGGTTTCACAATCAAGGTATCCAAGTGAC AACATTCCAAATGGAATTCCCTTCAAGAACTATCCGTATTTTCAAAGTATCTCGTACTTA ACATGGTTCTAAACGAAAGCAGTGCCATTCTCGATACTTGGCTTACATACTGGCTAAGGT ACTACTGAGCACACCCATTTGTCTCTGCTCTTTGAATTGACCTGGTTTCCCATCTTGGAA GCGTAGCAACATAACAATGCACACTCCATATCCACATCCATTTGCACCAAGTCGGTGACT AGGGCATGCCCCATCACCTCCACCATGCTCATCAACACACTAAGCTTACATGCTCGTCAT CATTAGGAAATCTACTTCCTAAGCACTATTGTACCATGAGAACCAACCCGTGATGGTAAC TAGGGCAATGCCTATCTCTCTCTTTAGATTCTAGATGAGTGCCTCTATCACGTGATAGCT ATTTGAATTAAGTACATATTTATAGCTACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTGGTCTCTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P93329 |
Definition |
sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula |
Align length |
86 |
Score (bit) |
31.6 |
E-value |
2.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8S7T6 |
Definition |
tr|Q8S7T6|Q8S7T6_ORYSJ Putative uncharacterized protein OSJNBb0005J14.5 (Fragment) OS=Oryza sativa subsp. japonica |
Align length |
62 |
Score (bit) |
37.0 |
E-value |
0.7 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912285|Adiantum capillus-veneris mRNA, clone: YMU001_000017_C06. (554 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8S7T6|Q8S7T6_ORYSJ Putative uncharacterized protein OSJNBb00... 37 0.70 tr|Q8S6Z2|Q8S6Z2_ORYSJ Putative polyprotein OS=Oryza sativa subs... 37 0.70 tr|Q7G209|Q7G209_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.70 tr|B4PTU0|B4PTU0_DROYA GE25345 OS=Drosophila yakuba GN=GE25345 P... 35 2.0 tr|Q2QRD9|Q2QRD9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 35 2.7 tr|Q7XSU3|Q7XSU3_ORYSJ OSJNBa0039K24.13 protein OS=Oryza sativa ... 35 3.5 tr|Q2R2V2|Q2R2V2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 35 3.5
>tr|Q8S7T6|Q8S7T6_ORYSJ Putative uncharacterized protein OSJNBb0005J14.5 (Fragment) OS=Oryza sativa subsp. japonica GN=OSJNBb0005J14.5 PE=4 SV=1 Length = 519
Score = 37.0 bits (84), Expect = 0.70 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +2
Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAPSPP 322 CH+ +L+ ++ + TP + P PS + +H+PYPHP +PS GH P Sbjct: 201 CHASHLSSHSSRGSVRTP------SGPRTPSSRVPYSPVHSPYPHPVSPSYTPGHTPVAS 254
Query: 323 PC 328 C Sbjct: 255 SC 256
>tr|Q8S6Z2|Q8S6Z2_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0034L04.35 PE=4 SV=1 Length = 1658
Score = 37.0 bits (84), Expect = 0.70 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +2
Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAPSPP 322 CH+ +L+ ++ + TP + P PS + +H+PYPHP +PS GH P Sbjct: 201 CHASHLSSHSSRGSVRTP------SGPRTPSSRVPYSPVHSPYPHPVSPSYTPGHTPVAS 254
Query: 323 PC 328 C Sbjct: 255 SC 256
>tr|Q7G209|Q7G209_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g38370 PE=4 SV=1 Length = 1663
Score = 37.0 bits (84), Expect = 0.70 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +2
Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAPSPP 322 CH+ +L+ ++ + TP + P PS + +H+PYPHP +PS GH P Sbjct: 201 CHASHLSSHSSRGSVRTP------SGPRTPSSRVPYSPVHSPYPHPVSPSYTPGHTPVAS 254
Query: 323 PC 328 C Sbjct: 255 SC 256
>tr|B4PTU0|B4PTU0_DROYA GE25345 OS=Drosophila yakuba GN=GE25345 PE=4 SV=1 Length = 971
Score = 35.4 bits (80), Expect = 2.0 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = -3
Query: 321 GGDGACPSHRLGANGCGYGVCIVMLLRFQDGKPGQFKEQRQ 199 GG G CPS L +GCG G C RF D KPG + R+ Sbjct: 766 GGGGTCPSMALSGSGCGGGAC-----RF-DSKPGSSRLLRR 800
>tr|Q2QRD9|Q2QRD9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g27900 PE=4 SV=1 Length = 284
Score = 35.0 bits (79), Expect = 2.7 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = +2
Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAP 313 CH+ +L+ ++ TP CS PS + +++PYPHP +PS GH P Sbjct: 184 CHASHLSSHSSRGSARTPSGPCS------PSSRAPYSPVYSPYPHPVSPSYTPGHTP 234
>tr|Q7XSU3|Q7XSU3_ORYSJ OSJNBa0039K24.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0039K24.13 PE=4 SV=2 Length = 1851
Score = 34.7 bits (78), Expect = 3.5 Identities = 19/57 (33%), Positives = 29/57 (50%) Frame = +2
Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAP 313 CH+ +L+ ++ TP + P PS + M++PYPHP +PS GH P Sbjct: 184 CHASHLSSHSSRGSARTP------SGPRSPSSRAPYSPMYSPYPHPVSPSYTPGHTP 234
>tr|Q2R2V2|Q2R2V2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g34550 PE=4 SV=1 Length = 622
Score = 34.7 bits (78), Expect = 3.5 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +2
Query: 143 CHSRYLAYILAKVLLSTPICLCSLN*PGFPSWKRSNITMHTPYPHPFAPSR*LGHAP 313 CH+ +L+ ++ TP + P PS + + +++PYPHP +PS GH P Sbjct: 199 CHASHLSSHSSRGSARTP------SGPRSPSSRAPYLPVYSPYPHPVSPSYTPGHTP 249
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