BP912213 |
Clone id |
YMU001_000016_D12 |
Library |
YMU01 |
Length |
396 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000016_D12. |
Accession |
BP912213 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2272Contig1 |
Sequence |
ACATAATTTTGAAAAAAATGCACAATTATCAGGCTTGAGCAATGAGTTACAAGAGAGGGG ATAAGCAACCCCTTCTTATTCTTTGGAAGATAAACAAGCACGCCAAAGAAGTATAATAAA ACTTGTGCTTTGGGATACTTGTTTGACATGTGCCTCTGTGTAACAATCCCTCCATAAACC CACATATGACCCCAGACATCAATGAGGCAGATCTCGACAGAAAGCTTCCTCACTCTGCCG CCTATACGTTATTCATCTGAGTCGGATCCTGGATTTTCTCCACCTCGCCGAACACTACTC TTCTTGCCCTTTACCCTTTGCATTGACATTTCTCCATCCAATGTCAACATGCTGGACTTT GCCAGCCTCTCTTCCAGCTCCTCTGTAGTGAACTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O64628 |
Definition |
sp|O64628|TXND9_ARATH Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana |
Align length |
47 |
Score (bit) |
37.0 |
E-value |
0.031 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNH2 |
Definition |
tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
52 |
Score (bit) |
50.1 |
E-value |
6.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912213|Adiantum capillus-veneris mRNA, clone: YMU001_000016_D12. (396 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea... 50 6e-05 tr|A7QW72|A7QW72_VITVI Chromosome chr3 scaffold_199, whole genom... 44 0.005 tr|A5BWR2|A5BWR2_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005 tr|A9PC45|A9PC45_POPTR Putative uncharacterized protein OS=Popul... 42 0.020 tr|B7FMC0|B7FMC0_MEDTR Putative uncharacterized protein OS=Medic... 40 0.058 tr|Q6YW09|Q6YW09_ORYSJ Os08g0250700 protein OS=Oryza sativa subs... 39 0.099 tr|A3BR71|A3BR71_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.099 tr|A2YT09|A2YT09_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.099 tr|Q541V3|Q541V3_ARATH Putative ATP binding protein OS=Arabidops... 37 0.49 tr|Q6LGT2|Q6LGT2_PHOPR Putative multidrug efflux RND transporter... 35 2.4 tr|A1RH32|A1RH32_SHESW Transporter, hydrophobe/amphiphile efflux... 33 5.4 tr|B7V501|B7V501_PSEAE Transporter, hydrophobe/amphiphile efflux... 33 5.4 tr|B7D114|B7D114_9BURK Transporter, hydrophobe/amphiphile efflux... 33 5.4 tr|Q9LSU4|Q9LSU4_ARATH Genomic DNA, chromosome 3, P1 clone: MWL2... 33 5.4 tr|Q8L9H7|Q8L9H7_ARATH Putative ATP binding protein OS=Arabidops... 33 5.4 tr|B3TP06|B3TP06_VIBAN GroEL OS=Vibrio anguillarum PE=4 SV=1 33 7.1 tr|Q8GWR9|Q8GWR9_ARATH Putative uncharacterized protein At3g2558... 33 7.1 tr|A9SSS0|A9SSS0_PHYPA Predicted protein OS=Physcomitrella paten... 33 7.1 tr|A6X6A3|A6X6A3_OCHA4 Transporter, hydrophobe/amphiphile efflux... 33 9.2 tr|Q7B852|Q7B852_TROWH 60 kDa chaperonin OS=Tropheryma whipplei ... 33 9.2 tr|B7VHQ8|B7VHQ8_VIBSP 60 kDa chaperonin (Protein Cpn60) (GroEL ... 33 9.2
>tr|A9NNH2|A9NNH2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 217
Score = 50.1 bits (118), Expect = 6e-05 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS----SVRRGGENPGSDSDE 252 EF+TEELEERLAKS ++ +GE S R + K S S+R+ G SDSD+ Sbjct: 166 EFSTEELEERLAKSKIIVFEGESSASRFRSKVSSNNRSIRQSGNGDDSDSDD 217
>tr|A7QW72|A7QW72_VITVI Chromosome chr3 scaffold_199, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007723001 PE=4 SV=1 Length = 238
Score = 43.5 bits (101), Expect = 0.005 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS--SVRRGGENPGSDSD 255 EF+TEELEERLAK+ ++ +GE S+ K SVR+ + SDSD Sbjct: 190 EFSTEELEERLAKAQVIIFEGESSLHASKSSSQPRSVRQSSNSYSSDSD 238
>tr|A5BWR2|A5BWR2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013928 PE=4 SV=1 Length = 207
Score = 43.5 bits (101), Expect = 0.005 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKS--SVRRGGENPGSDSD 255 EF+TEELEERLAK+ ++ +GE S+ K SVR+ + SDSD Sbjct: 159 EFSTEELEERLAKAQVIIFEGESSLHASKSSSQPRSVRQSSNSYSSDSD 207
>tr|A9PC45|A9PC45_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 213
Score = 41.6 bits (96), Expect = 0.020 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGK---KSSVRRGGENPGSDSD 255 EF TE+LEERLAK+ ++ +GE S+ K + SVR+ + SDSD Sbjct: 164 EFNTEDLEERLAKAQVIFFEGESSLNSSKSSAQTRRSVRQSESHDSSDSD 213
>tr|B7FMC0|B7FMC0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 213
Score = 40.0 bits (92), Expect = 0.058 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKG---KKSSVRRGGENPGSDSD 255 +F+TE LEERLAK+ ++ L+GE S+ R + K SVR+ SDS+ Sbjct: 164 DFSTEVLEERLAKAQVIFLEGESSIHRARSGAQTKRSVRQSTTADSSDSE 213
>tr|Q6YW09|Q6YW09_ORYSJ Os08g0250700 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0012K14.33 PE=2 SV=1 Length = 210
Score = 39.3 bits (90), Expect = 0.099 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENPGSDSD 255 +F+TE+LEERLAK+ ++ LDGE K K SVR+ SDS+ Sbjct: 163 DFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 210
>tr|A3BR71|A3BR71_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025543 PE=4 SV=1 Length = 112
Score = 39.3 bits (90), Expect = 0.099 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENPGSDSD 255 +F+TE+LEERLAK+ ++ LDGE K K SVR+ SDS+ Sbjct: 65 DFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 112
>tr|A2YT09|A2YT09_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28462 PE=4 SV=1 Length = 190
Score = 39.3 bits (90), Expect = 0.099 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVK-GKKSSVRRGGENPGSDSD 255 +F+TE+LEERLAK+ ++ LDGE K K SVR+ SDS+ Sbjct: 143 DFSTEDLEERLAKAQVIFLDGEGPAHASKQATKRSVRQSDTGNSSDSE 190
>tr|Q541V3|Q541V3_ARATH Putative ATP binding protein OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1 Length = 211
Score = 37.0 bits (84), Expect = 0.49 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = -2
Query: 395 EFTTEELEERLAKSSMLTLDGEMSMQRVKGKKSSVRRGGENPGSDSD 255 +F+TE+LEER+A++ ++ DGE S + K R ++ SDSD Sbjct: 163 DFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSD 209
>tr|Q6LGT2|Q6LGT2_PHOPR Putative multidrug efflux RND transporter MexF OS=Photobacterium profundum GN=R00426 PE=4 SV=1 Length = 1044
Score = 34.7 bits (78), Expect = 2.4 Identities = 29/96 (30%), Positives = 40/96 (41%) Frame = +2
Query: 59 G*ATPSYSLEDKQARQRSIIKLVLWDTCLTCASV*QSLHKPTYDPRHQ*GRSRQKASSLC 238 G A P YS + QA ++K L D +H D +Q Q + Sbjct: 837 GAAAPGYSSDQAQAAMIEVLKTHLQD----------GMHYEWTDVVYQ-----QIIAGNT 881
Query: 239 RLYVIHLSRILDFLHLAEHYSSCPLPFALTFLHPMS 346 +Y+ L IL FL LA Y S LP A+ + PM+ Sbjct: 882 MIYIFPLVIILVFLVLAAQYESLKLPMAIILIVPMT 917
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