BP912197
Clone id YMU001_000016_C05
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000016_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATCTGATGTCTTTATCTTGGAATACAGGAAATGGTTAGATAAGGTGGGGCACGGCATGC
CGTATTACATTGGCCACAAGACCTTGTCACTACCTGCTAAAGAGCCGGTTGTGGAGGCAG
CGCCGGCGGGTTTCATAGCAGCAAAGGCATCTTCACCAGCCATGAAAGGGGCTAATGCAA
CTCCATTTGCACCAAATCTTACGAACAGATATTTTCGACATGTGGTTCATTGTTCAAAAT
GCAGGGGGGCCTTCCAAAACTTGAAATCGGGGCAGAAGTTGTTTACTGTCTTGGCTGTAC
TTTCATTCAGTTTAGGGGTGCTGATATCGCGCACGCCATGGAGAGTCGCTTCTGTTGGTG
TGGGTATTCTAGCTATTGCAGGGTTATACACTTGCCAACTGGGTATCAACATGTTGACCA
CAAATGAACTGCGACCACATAGGAAATAATGTAGAACCTCTGTTTCTGAACAGGGTGTTG
TGCCATGATCACCTGGTGTATTGGACCTAATTTGTTCTCAATAGCACCTGCAACCTGACA
TAAAATGTCTGCAGGCTTGTATATTATGTC
■■Homology search results ■■ -
sp_hit_id Q9FYC2
Definition sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
Align length 130
Score (bit) 35.0
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912197|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_C05.
(570 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=A... 35 0.26
sp|P08640|MUC1_YEAST Mucin-like protein 1 OS=Saccharomyces cerev... 31 4.9
sp|Q39458|MT1_CICAR Metallothionein-like protein 1 OS=Cicer arie... 31 4.9
sp|O02671|LEPR_PIG Leptin receptor OS=Sus scrofa GN=LEPR PE=2 SV=3 30 8.4

>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic
OS=Arabidopsis thaliana GN=PAO PE=1 SV=1
Length = 537

Score = 35.0 bits (79), Expect = 0.26
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 1/130 (0%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
+D F+L +R WL + G P + G S+P+ + +T
Sbjct: 413 ADRFVLAFRNWLRRHGKSQPEWFG-------------------------STPSNQPLPST 447

Query: 183 PFAPN-LTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVG 359
+ +R+ +H CS C+GA+ + + +K V + + S R+ G
Sbjct: 448 VLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAG 507

Query: 360 VGILAIAGLY 389
+ +++ A Y
Sbjct: 508 LSLISAASAY 517


>sp|P08640|MUC1_YEAST Mucin-like protein 1 OS=Saccharomyces
cerevisiae GN=MUC1 PE=1 SV=2
Length = 1367

Score = 30.8 bits (68), Expect = 4.9
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -3

Query: 499 TPGDHGTTPCSETEVLHYFLCGRSSFVVNMLIPSWQVYNPAIARIPTPTEATLHGVRDIS 320
TP H TTPC++ + C + + + PS + A +PTP+ +T
Sbjct: 286 TPPHHDTTPCTKKKTTTSKTCTKKT-TTPVPTPSSSTTESSSAPVPTPSSSTTESSSAPV 344

Query: 319 TPKLNESTAKTV 284
T ES++ V
Sbjct: 345 TSSTTESSSAPV 356


>sp|Q39458|MT1_CICAR Metallothionein-like protein 1 OS=Cicer
arietinum PE=3 SV=1
Length = 75

Score = 30.8 bits (68), Expect = 4.9
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2

Query: 221 CGSLFKM--QGGLPKLEIGAE---VVYCLGCTFIQFRGADIAHAMESRFCWCGYSSYC 379
CG K + GL +E G VV +G T I F GA+++ A E C CG S C
Sbjct: 12 CGDQCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGCKCGSSCTC 69


>sp|O02671|LEPR_PIG Leptin receptor OS=Sus scrofa GN=LEPR PE=2 SV=3
Length = 1165

Score = 30.0 bits (66), Expect = 8.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2

Query: 230 LFKMQGGLPKLEIGAEVVYCLGCTFIQFRGADIAHAMESRFCWCGYSSYC 379
L K +G PK VY LG T I+ R +D+ ESR C + ++C
Sbjct: 1060 LMKFEGNFPKEHNDERSVYYLGVTSIKKRESDVFLTDESR-VRCPFPAHC 1108


tr_hit_id Q9SK50
Definition tr|Q9SK50|Q9SK50_ARATH Putative Rieske iron-sulfur protein OS=Arabidopsis thaliana
Align length 148
Score (bit) 130.0
E-value 4.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912197|Adiantum capillus-veneris mRNA, clone:
YMU001_000016_C05.
(570 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9SK50|Q9SK50_ARATH Putative Rieske iron-sulfur protein OS=Ar... 130 4e-29
tr|A9T239|A9T239_PHYPA Predicted protein OS=Physcomitrella paten... 129 1e-28
tr|A9RIE5|A9RIE5_PHYPA Predicted protein OS=Physcomitrella paten... 129 1e-28
tr|O49931|O49931_PEA Rieske iron-sulfur protein Tic55 OS=Pisum s... 127 3e-28
tr|Q6K689|Q6K689_ORYSJ Os02g0792800 protein OS=Oryza sativa subs... 113 8e-24
tr|A2XAH0|A2XAH0_ORYSI Putative uncharacterized protein OS=Oryza... 113 8e-24
tr|Q56YA0|Q56YA0_ARATH Rieske iron-sulfur like protein (Fragment... 97 6e-19
tr|A7P679|A7P679_VITVI Chromosome chr4 scaffold_6, whole genome ... 84 7e-15
tr|B7JUP0|B7JUP0_SYNP8 Rieske (2Fe-2S) domain protein OS=Synecho... 52 3e-05
tr|B2J2T9|B2J2T9_NOSP7 Rieske (2Fe-2S) domain protein OS=Nostoc ... 51 4e-05
tr|B4C009|B4C009_9CHRO Rieske (2Fe-2S) domain protein OS=Cyanoth... 51 4e-05
tr|B0CBB9|B0CBB9_ACAM1 Pheophorbide A oxygenase OS=Acaryochloris... 49 1e-04
tr|B0JQL1|B0JQL1_MICAN Probable dioxygenase Rieske iron-sulfur c... 47 6e-04
tr|B4VSS3|B4VSS3_9CYAN Pheophorbide a oxygenase family OS=Microc... 44 0.005
tr|A7PQP0|A7PQP0_VITVI Chromosome chr6 scaffold_25, whole genome... 43 0.011
tr|Q5N0P9|Q5N0P9_SYNP6 Cell death suppressor protein Lls1 homolo... 43 0.014
tr|Q31L75|Q31L75_SYNE7 Cell death suppressor protein Lls1-like O... 43 0.014
tr|Q8YMC7|Q8YMC7_ANASP Alr5007 protein OS=Anabaena sp. (strain P... 41 0.041
tr|Q10Y35|Q10Y35_TRIEI Pheophorbide a oxygenase OS=Trichodesmium... 41 0.041
tr|A0YYB9|A0YYB9_9CYAN Rieske (2Fe-2S) region protein OS=Lyngbya... 40 0.069
tr|O04127|O04127_MAIZE Lethal leaf-spot 1 (Fragment) OS=Zea mays... 40 0.12
tr|B1XL97|B1XL97_SYNP2 Probable Rieske iron-sulfur protein OS=Sy... 39 0.15
tr|Q947Y2|Q947Y2_ORYSA Putative cell death suppressor protein OS... 39 0.15
tr|Q75HI6|Q75HI6_ORYSJ Putative iron-sulfur cluster-binding prot... 39 0.15
tr|Q10RT5|Q10RT5_ORYSJ Pheophorbide a oxygenase, chloroplast, pu... 39 0.15
tr|Q10BT2|Q10BT2_ORYSJ Cell death suppressor protein Lls1, putat... 39 0.15
tr|Q0DV66|Q0DV66_ORYSJ Os03g0146400 protein OS=Oryza sativa subs... 39 0.15
tr|Q0DMJ4|Q0DMJ4_ORYSJ Os03g0805600 protein OS=Oryza sativa subs... 39 0.15
tr|A3ANT8|A3ANT8_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.15
tr|A2XN43|A2XN43_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.15

>tr|Q9SK50|Q9SK50_ARATH Putative Rieske iron-sulfur protein
OS=Arabidopsis thaliana GN=At2g24820 PE=2 SV=1
Length = 539

Score = 130 bits (328), Expect = 4e-29
Identities = 60/148 (40%), Positives = 84/148 (56%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ EYRKW+DKVGHGMPY+ GH+T+SL G IAA ++S KG T
Sbjct: 391 SDTWVAEYRKWMDKVGHGMPYHFGHRTISLPKVPPVVEHAPAGLIAALSASYPAKGGIGT 450

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
APNL NRYFRH++HC C ++ + + + + AV +L +L+ W+ +G
Sbjct: 451 MHAPNLANRYFRHIIHCRSCSNVIKSFELWKNILSATAVALTALAILVVSRQWKAVLLGS 510

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
L A YTC IN+ T N +R HR+
Sbjct: 511 AALCSAAAYTCLRAINLNTNNFIRTHRR 538


>tr|A9T239|A9T239_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_235252 PE=4 SV=1
Length = 487

Score = 129 bits (324), Expect = 1e-28
Identities = 64/148 (43%), Positives = 84/148 (56%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ E+RKW D VGHGMPYY GHKT+S GF AA ASS +G+
Sbjct: 337 SDTWVSEFRKWNDLVGHGMPYYFGHKTISQAKNPAVVEVAPAGFSAAAASSYPAQGSFGE 396

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
FA + TNRYFRHVVHC C A + ++ QK+ T + + + +++ WR V
Sbjct: 397 MFARDPTNRYFRHVVHCRSCLSALGSFQTYQKVATAFGLAAAGVAIVLPSVVWRATLVIT 456

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
+LA A Y C GI +LT N +RPHRK
Sbjct: 457 ALLAFAAAYACSRGIAILTKNYVRPHRK 484


>tr|A9RIE5|A9RIE5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_114684 PE=4 SV=1
Length = 481

Score = 129 bits (323), Expect = 1e-28
Identities = 63/148 (42%), Positives = 84/148 (56%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ E+RKW D+VG GMPYY GH+T S GF AA ASS +G+
Sbjct: 331 SDTWVSEFRKWNDRVGRGMPYYFGHQTTSAAINPAILEAAPAGFSAAAASSYPAQGSFGE 390

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
FA + TNRYFRHVVHC C A N + QK+ L +++ + + +S WR + V +
Sbjct: 391 MFARDPTNRYFRHVVHCKSCLKALNNFQKFQKVGIALGLIATGVAITLSSVMWRASFVTI 450

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
+LA A Y C G+ LT N +RPHRK
Sbjct: 451 ALLAFATSYACSRGVAALTVNYVRPHRK 478


>tr|O49931|O49931_PEA Rieske iron-sulfur protein Tic55 OS=Pisum
sativum GN=tic55 PE=2 SV=1
Length = 553

Score = 127 bits (320), Expect = 3e-28
Identities = 60/148 (40%), Positives = 83/148 (56%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ EYRKW+DKVGHGMPY+ GH T+SL G +A ++S KG T
Sbjct: 405 SDTWVAEYRKWMDKVGHGMPYHFGHSTISLPEEPAVVEHAPAGLVAGLSASSPAKGGIGT 464

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
APNL NRYFRHV+HC C A + + + + + + V +L +L+S W+V +
Sbjct: 465 MHAPNLANRYFRHVIHCKGCSSAIKAFQIWKNVLSGVVVALAALAILVSGRQWKVLLLAS 524

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
L G+Y C I M TTN +R HR+
Sbjct: 525 ASLCSVGVYACSTAIAMNTTNFIRVHRR 552


>tr|Q6K689|Q6K689_ORYSJ Os02g0792800 protein OS=Oryza sativa subsp.
japonica GN=P0700F06.13 PE=2 SV=1
Length = 539

Score = 113 bits (282), Expect = 8e-24
Identities = 54/148 (36%), Positives = 77/148 (52%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ EYR+W+D+ GHGMPYY GH TLS G +A ++S KG
Sbjct: 391 SDTWVAEYRRWMDRAGHGMPYYFGHSTLSPPPVPAVVEQAPAGAVAGMSASFPAKGGVGA 450

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
APN TNRYFRHVVHC CR + + S + F LA + + +L + + +
Sbjct: 451 THAPNPTNRYFRHVVHCKGCRDSVKRYASLKNAFAALAAAAVAAAILAATRQLKAVLLAS 510

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
A Y C ++++TTN +R HR+
Sbjct: 511 AAALAAASYACNWVLSLITTNFIRTHRR 538


>tr|A2XAH0|A2XAH0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_09250 PE=4 SV=1
Length = 539

Score = 113 bits (282), Expect = 8e-24
Identities = 54/148 (36%), Positives = 77/148 (52%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ EYR+W+D+ GHGMPYY GH TLS G +A ++S KG
Sbjct: 391 SDTWVAEYRRWMDRAGHGMPYYFGHSTLSPPPVPAVVEQAPAGAVAGMSASFPAKGGVGA 450

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
APN TNRYFRHVVHC CR + + S + F LA + + +L + + +
Sbjct: 451 THAPNPTNRYFRHVVHCKGCRDSVKRYASLKNAFAALAAAAVAAAILAATRQLKAVLLAS 510

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
A Y C ++++TTN +R HR+
Sbjct: 511 AAALAAASYACNWVLSLITTNFIRTHRR 538


>tr|Q56YA0|Q56YA0_ARATH Rieske iron-sulfur like protein (Fragment)
OS=Arabidopsis thaliana GN=At2g24820 PE=2 SV=1
Length = 283

Score = 97.1 bits (240), Expect = 6e-19
Identities = 42/86 (48%), Positives = 54/86 (62%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++ EYRKW+DKVGHGMPY+ GH+T+SL G IAA ++S KG T
Sbjct: 197 SDTWVAEYRKWMDKVGHGMPYHFGHRTISLPKVPPVVEHAPAGLIAALSASYPAKGGIGT 256

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQN 260
APNL NRYFRH++HC C ++
Sbjct: 257 MHAPNLANRYFRHIIHCRSCSNVIKS 282


>tr|A7P679|A7P679_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032812001
PE=4 SV=1
Length = 520

Score = 83.6 bits (205), Expect = 7e-15
Identities = 40/106 (37%), Positives = 61/106 (57%)
Frame = +3

Query: 129 GFIAAKASSPAMKGANATPFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSF 308
G +A ++S KG T APN NRYFRHVVHC CR + ++ + +F LA+ S
Sbjct: 414 GLVAGLSASSPAKGGIGTMHAPNPANRYFRHVVHCKGCRSVVKAFQAWKNVFFTLALAST 473

Query: 309 SLGVLISRTPWRVASVGVGILAIAGLYTCQLGINMLTTNELRPHRK 446
+L +L++ W+ + L++AG+Y C + M TTN +R HR+
Sbjct: 474 ALAILVTGRQWKALLLVGTALSLAGMYACSTVVAMNTTNFVRIHRR 519


>tr|B7JUP0|B7JUP0_SYNP8 Rieske (2Fe-2S) domain protein
OS=Synechococcus sp. (strain PCC 8801 / RF-1)
GN=PCC8801_1530 PE=4 SV=1
Length = 450

Score = 51.6 bits (122), Expect = 3e-05
Identities = 35/148 (23%), Positives = 63/148 (42%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD+ ++EYRKWLD G +P+Y G+ T A S G N+
Sbjct: 329 SDLLVVEYRKWLDTFGKALPFYQGYTT---------------------AKSSPKTGENSQ 367

Query: 183 PFAPNLTNRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVGV 362
+R+ +H C CR Q + QK+ +A+L + +L T + S+ +
Sbjct: 368 --TKVTLDRFKQHTQICHSCRQTHQRIIITQKVLIAVAILLAACAILTDGTKLEIISILL 425

Query: 363 GILAIAGLYTCQLGINMLTTNELRPHRK 446
+ ++ +G+ +L T +P+ +
Sbjct: 426 SLFSL----IIAVGLGVLKTKFEQPYTR 449


>tr|B2J2T9|B2J2T9_NOSP7 Rieske (2Fe-2S) domain protein OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_F1863 PE=4 SV=1
Length = 451

Score = 51.2 bits (121), Expect = 4e-05
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +3

Query: 3 SDVFILEYRKWLDKVGHGMPYYIGHKTLSLXXXXXXXXXXXXGFIAAKASSPAMKGANAT 182
SD ++EYRKWLDK G +P+Y G+ T + N+
Sbjct: 331 SDTLVVEYRKWLDKFGSSLPFYQGYST-------------------------SKNVGNSE 365

Query: 183 PFAPNLT-NRYFRHVVHCSKCRGAFQNLKSGQKLFTVLAVLSFSLGVLISRTPWRVASVG 359
+T +R+ +H + C C A+Q ++ +A+ ++G+L + R+A++
Sbjct: 366 SDEKLITLDRFSQHTIICHSCNQAYQVTNKVRQSCIGVAIALAAIGILADDSRIRIAAIS 425

Query: 360 VGILAI 377
V I AI
Sbjct: 426 VSITAI 431