BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912108|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_C04.
         (446 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O29750|HMEB_ARCFU Hdr-like menaquinol oxidoreductase integral...    34   0.32 
sp|Q52KN9|NCM_XENLA Nucampholin homolog OS=Xenopus laevis PE=2 SV=1    32   0.93 
sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha ...    31   2.1  
sp|P01021|BNP_AGKHA Bradykinin-potentiating and C-type natriuret...    30   4.6  
sp|Q2T9Q6|TEKT2_BOVIN Tektin-2 OS=Bos taurus GN=TEKT2 PE=2 SV=1        30   6.0  
sp|P19260|MSA2_PLAFG Merozoite surface antigen 2, allelic form 2...    30   6.0  
sp|Q2WGN9|GAB4_HUMAN GRB2-associated-binding protein 4 OS=Homo s...    30   6.0  
sp|Q9CJH4|TILS_LACLA tRNA(Ile)-lysidine synthase OS=Lactococcus ...    29   7.8  
sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidi...    29   7.8  
sp|P15375|MYF6_MOUSE Myogenic factor 6 OS=Mus musculus GN=Myf6 P...    29   7.8  

>sp|O29750|HMEB_ARCFU Hdr-like menaquinol oxidoreductase integral
           membrane subunit OS=Archaeoglobus fulgidus GN=hmeB PE=3
           SV=1
          Length = 395

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 24/80 (30%), Positives = 35/80 (43%)
 Frame = +1

Query: 7   LLLMEIYFDILYTLTVMDVSYLNGLALLSHSLPSAILAKGLFVAPASSMIEYVPQKATSS 186
           LLL  +YF   +T   +D   + GLAL+   L   ++  G F+A       Y+P    + 
Sbjct: 207 LLLANLYFTFRFTKRELDPKLIRGLALIFAGL---MMVLGYFLAVEGLEKGYIPALHEAV 263

Query: 187 GRSFLAQCSPCKWPFCLLFL 246
              FL   S   W F LL +
Sbjct: 264 QFVFLTPTSGVFWSFWLLVI 283


>sp|Q52KN9|NCM_XENLA Nucampholin homolog OS=Xenopus laevis PE=2 SV=1
          Length = 803

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -1

Query: 404 TMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDEAPRRSRYGEGKKRRQNG 225
           T KQ   S    +      E+     + +S S+E + SSS+ ++ RR ++ + KK+ +  
Sbjct: 703 TQKQNVESSDSSSDSSSGSESSSDSDSSSSSSSESSSSSSDSDSSRRKKHSQKKKKSREA 762

Query: 224 H-LQGEHWARNDRPEE 180
           H    +  A +DR +E
Sbjct: 763 HKAASKKQAPDDRRKE 778


>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha
           OS=Rattus norvegicus GN=Scn3a PE=1 SV=1
          Length = 1951

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -1

Query: 311 SNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQGEHWARNDR 189
           S+E ++ SS+     R+R    KKRRQ  HL+G H A  DR
Sbjct: 485 SSEASKLSSKSAKEWRNRR---KKRRQREHLEGNHRADGDR 522


>sp|P01021|BNP_AGKHA Bradykinin-potentiating and C-type natriuretic
           peptides OS=Agkistrodon halys blomhoffi PE=1 SV=4
          Length = 263

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = -1

Query: 443 NETSAAGVAEVRNTM----KQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDE 276
           +E+ A G   +R  +    +  +   A G  G  S     A   R S S   + +S+   
Sbjct: 133 HESPAGGTTALREELSLGPEAASGPAAAGADGGRSGSKAPAALHRLSKSKGASATSASAS 192

Query: 275 APRRSRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*G 165
            P R    +GK+ RQN       WAR   P+  A  G
Sbjct: 193 RPMRDLRTDGKQARQN-------WARMVNPDHHAVGG 222


>sp|Q2T9Q6|TEKT2_BOVIN Tektin-2 OS=Bos taurus GN=TEKT2 PE=2 SV=1
          Length = 430

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -1

Query: 356 GSMEAKQAIFTRNSLSNEVAESSSEDEAPR-RSRYGEGKKRRQNGHLQGE-HWARNDRPE 183
           G  E K+AI  R +++  +AE+++E EA R  + +   K+ R+   L  E  W   +  E
Sbjct: 229 GEAEMKKAIELREAIALTIAETNNELEAQRVATEFAFRKRLREMEKLYSELKWQEKNTLE 288

Query: 182 EVA 174
           E+A
Sbjct: 289 EIA 291


>sp|P19260|MSA2_PLAFG Merozoite surface antigen 2, allelic form 2
           OS=Plasmodium falciparum (isolate FCR-3 / Gambia)
           GN=MSA2 PE=1 SV=1
          Length = 287

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/89 (23%), Positives = 35/89 (39%)
 Frame = -1

Query: 440 ETSAAGVAEVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDEAPRRS 261
           ET+ A      N+  Q +S      P     + K          N  A ++ + E+P   
Sbjct: 154 ETNQANKETQNNSNVQQDSQTKSNVPPTQDADTKSPTAQPEQAENS-APTAEQTESPELQ 212

Query: 260 RYGEGKKRRQNGHLQGEHWARNDRPEEVA 174
              E K   Q+GH+   H +RN+ P+  +
Sbjct: 213 SAPENKGTGQHGHM---HGSRNNHPQNTS 238


>sp|Q2WGN9|GAB4_HUMAN GRB2-associated-binding protein 4 OS=Homo
           sapiens GN=GAB4 PE=2 SV=1
          Length = 574

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 335 PALLPYYRTPGSLQPMRNLSVSLC 406
           P +L YY+  GS +P+R ++++LC
Sbjct: 76  PDVLEYYKNDGSKKPLRTINLNLC 99


>sp|Q9CJH4|TILS_LACLA tRNA(Ile)-lysidine synthase OS=Lactococcus
           lactis subsp. lactis GN=tilS PE=3 SV=1
          Length = 423

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 183 GGSLLRNILNHRGGRSDKQTFCKDSTGQGM 94
           GG L+R +L       D QT+ +DST QG+
Sbjct: 154 GGQLIRPLLKFTKEELDAQTYYEDSTNQGL 183


>sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4
           OS=Coccidioides immitis GN=SPB4 PE=3 SV=1
          Length = 626

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = -1

Query: 347 EAKQAIFTRNSLSNEVAESSSE-DEAP-----RRSRYGEGKKRRQNGHLQGEHWARNDRP 186
           E+  +  T N L      SSS  D AP      +    E ++ R+    + EHW +    
Sbjct: 515 ESLNSATTHNPLKRPAPSSSSNNDTAPWSKTLEKKSDKEKRRERKRAKKEREHWEKMTEE 574

Query: 185 EEVAF*GTYSIIEEAGATNR 126
           E+     T+ ++EE    NR
Sbjct: 575 EKTKSRETHQMLEELRKKNR 594


>sp|P15375|MYF6_MOUSE Myogenic factor 6 OS=Mus musculus GN=Myf6 PE=2
           SV=1
          Length = 242

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 61  VSYLNGLALLSHSLPSAILAKGLFVAPASSMIEYVPQKATSSGRSFLAQCSPCKWP 228
           +SY+  L  L H L      + L V P S    Y P++    G  FL  CSP +WP
Sbjct: 138 ISYIERLQDLLHRLDQQEKMQELGVDPYS----YKPKQEILEGADFLRTCSP-QWP 188

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912108|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_C04.
         (446 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9S9Q6|Q9S9Q6_ARATH F26G16.5 protein OS=Arabidopsis thaliana ...    50   7e-05
tr|A9LNK9|A9LNK9_ARATH Cleavage and polyadenylation specificity ...    50   7e-05
tr|A5BGM3|A5BGM3_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|B4PGP5|B4PGP5_DROYA GE21359 OS=Drosophila yakuba GN=GE21359 P...    35   2.4  
tr|A5DVS1|A5DVS1_LODEL Putative uncharacterized protein OS=Lodde...    34   4.1  
tr|Q8A6V1|Q8A6V1_BACTN Galactose-binding-like protein OS=Bactero...    33   5.3  
tr|Q5VRM6|Q5VRM6_ORYSJ Putative uncharacterized protein OSJNBa00...    33   7.0  
tr|B2V1Q6|B2V1Q6_CLOBA Putative ATP-dependent RNA helicase RhlE ...    33   9.1  
tr|A4E6U7|A4E6U7_9ACTN Translation initiation factor IF-2 OS=Col...    33   9.1  
tr|Q18329|Q18329_CAEEL Protein C30F2.3, partially confirmed by t...    33   9.1  
tr|Q16FC5|Q16FC5_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.1  
tr|B6KUT1|B6KUT1_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.1  
tr|A5K8R6|A5K8R6_PLAVI Putative uncharacterized protein OS=Plasm...    33   9.1  
tr|A4R4L4|A4R4L4_MAGGR Putative uncharacterized protein OS=Magna...    33   9.1  

>tr|Q9S9Q6|Q9S9Q6_ARATH F26G16.5 protein OS=Arabidopsis thaliana
           GN=F26G16.5 PE=4 SV=1
          Length = 335

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/29 (79%), Positives = 25/29 (86%)
 Frame = -1

Query: 320 NSLSNEVAESSSEDEAPRRSRYGEGKKRR 234
           NSL NE +ES  EDEAPRRSR+GEGKKRR
Sbjct: 307 NSLRNEESESEDEDEAPRRSRHGEGKKRR 335


>tr|A9LNK9|A9LNK9_ARATH Cleavage and polyadenylation specificity
           factor-YT521B OS=Arabidopsis thaliana GN=At1g30460 PE=2
           SV=1
          Length = 631

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/29 (79%), Positives = 25/29 (86%)
 Frame = -1

Query: 320 NSLSNEVAESSSEDEAPRRSRYGEGKKRR 234
           NSL NE +ES  EDEAPRRSR+GEGKKRR
Sbjct: 603 NSLRNEESESEDEDEAPRRSRHGEGKKRR 631


>tr|A5BGM3|A5BGM3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022201 PE=4 SV=1
          Length = 299

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = -1

Query: 320 NSLSNEVAESSSEDEAPRRSRYGEGKKRR 234
           NS  N+  ES SEDEAPRRSR+GEGKK+R
Sbjct: 273 NSFRND--ESESEDEAPRRSRHGEGKKKR 299


>tr|B4PGP5|B4PGP5_DROYA GE21359 OS=Drosophila yakuba GN=GE21359 PE=4
           SV=1
          Length = 914

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -1

Query: 338 QAIFTRNSLSNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQ 216
           Q  F+ ++ S  + +SS  +EAP+R R  E KK +QN H+Q
Sbjct: 709 QMRFSPDNHSARLVQSSRLEEAPKREREQEPKKEQQNTHIQ 749


>tr|A5DVS1|A5DVS1_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_01457 PE=4 SV=1
          Length = 510

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
 Frame = -1

Query: 416 EVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSL-SNEVAESSSEDEAPRRSRYGEGKK 240
           EV+ T K+++SS +  +      ++  +  + +S  S+  ++SSS DE  + S   E  K
Sbjct: 165 EVKKTSKKSSSSSSSSSESDSDSDSSSSSSSSSSSDSDSDSDSSSSDEEEKDSEV-ENPK 223

Query: 239 RRQNGHLQGEHWARNDR--PEEVAF*GTYSIIEEAGAT 132
           +R+N  +  +  ++  +   EE A   + ++ EE GAT
Sbjct: 224 KRKNEEVVADETSKKSKTEAEETAAPTSPAVAEEEGAT 261


>tr|Q8A6V1|Q8A6V1_BACTN Galactose-binding-like protein
           OS=Bacteroides thetaiotaomicron GN=BT_1775 PE=4 SV=1
          Length = 570

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -1

Query: 428 AGVAEVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDEAPRRSRYGE 249
           AGVA  +NT     S+ AG       ME K+  +    ++ +V  ++ ED A  R  +GE
Sbjct: 460 AGVAPDKNTEWYVTSTEAGEW-----MEWKELPYAAGDITVKVCYAAKED-AKIRFDFGE 513

Query: 248 GKKRRQNG----HLQGEHWARND 192
           G KRRQ      H  G  W   D
Sbjct: 514 GTKRRQGPVVELHATGGEWVTVD 536


>tr|Q5VRM6|Q5VRM6_ORYSJ Putative uncharacterized protein
           OSJNBa0004I20.23 (Putative uncharacterized protein
           P0029D06.1) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0004I20.23 PE=4 SV=1
          Length = 824

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -1

Query: 314 LSNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*GTYSIIEEAGA 135
           LS+  AES+  D A R      G++R + G+     WAR  R E       YSI+   G+
Sbjct: 724 LSDVAAESTPADRARRERMRPGGQRRGRRGNEAVTGWARRRRAER------YSIVTAGGS 777

Query: 134 TNRPFAR 114
           T+    R
Sbjct: 778 TSARLRR 784


>tr|B2V1Q6|B2V1Q6_CLOBA Putative ATP-dependent RNA helicase RhlE
           OS=Clostridium botulinum (strain Alaska E43 / type E3)
           GN=CLH_3339 PE=4 SV=1
          Length = 432

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 410 RNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSED--EAPRRSRYGEGKKR 237
           ++++K    ++    P   ++E ++   TR     + A+  + D  + P+R+ YGE ++ 
Sbjct: 354 KSSLKDIEKTIGKNIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPKRNWYGEKRRS 413

Query: 236 RQNGHLQGE 210
           + NG  QG+
Sbjct: 414 QGNGGQQGK 422


>tr|A4E6U7|A4E6U7_9ACTN Translation initiation factor IF-2
           OS=Collinsella aerofaciens ATCC 25986 GN=COLAER_00124
           PE=3 SV=1
          Length = 904

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = -1

Query: 323 RNSLSNEVAESSSEDEAPRRSRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*GTYSIIEE 144
           R + SN VA      + P   + G+GKKR+   + + +H++R  R  E        ++EE
Sbjct: 221 RTNASNNVAAGM---DFPNPDKQGKGKKRKGGHNNEEDHYSRMAREAEEY--SREKVLEE 275

Query: 143 AGATNRPFARIALGRE*LRRAK 78
           A A     +R + GR   R+ K
Sbjct: 276 ARAAVEEASRESTGRRKKRKEK 297


>tr|Q18329|Q18329_CAEEL Protein C30F2.3, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=C30F2.3
           PE=4 SV=2
          Length = 403

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 24/107 (22%), Positives = 43/107 (40%)
 Frame = -1

Query: 443 NETSAAGVAEVRNTMKQTNSSLAGGTPGFGSMEAKQAIFTRNSLSNEVAESSSEDEAPRR 264
           NE S   + E+RN  +QTN S +GG     S       +T  +LSN+   S +  +  +R
Sbjct: 58  NEYSQTYLEELRNYEQQTNPSSSGGVITSSSSVPANGYYTGPALSNDQQNSVNYQQIVQR 117

Query: 263 SRYGEGKKRRQNGHLQGEHWARNDRPEEVAF*GTYSIIEEAGATNRP 123
           +          + ++ G ++       +     +YS   +  A   P
Sbjct: 118 NPSAYSNTGSSSSNIYGYNYNSGSSGSQATGSNSYSNNAQYSAPTNP 164