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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912100
Clone id YMU001_000015_B06
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000015_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTTATGAGATGGCACCTGTGGATCAAATGCTTGCCTTAGCTCAAAAGGAGATTTGTGCT
CTTACAACAGAGCTGTCAGTTACAAAGAAACATTATGCGGCGCTCCATGCAGCTGTGTAT
GGACCTTTTGAACCTGGTGATGGCAGCGACACATGGGACGCTTTGAGAGACTGGGATAAG
AAGGTGGCTGATTCTAGCTACAATGAGCTAGTTCGGCTTGATGAGTTCTATCGACAAGCA
CGAGCTCGAGTTAAGGAAGTGTTGCTGCAAAAGAAAGTGGAAAACTACTGCAAAGAGTTC
ATGAATTCTGTAAAGAGAGAGGAGAAGGACAACATTGGATCAGGATAGTCACTTTTCTGG
GGAGAGTGTGTGCAACGTTGCATTAGCAGCGCCACTTGTGCATTTGTTGCAGCGTGCTCC
AGGTTGCATTTCACTTCCGCAAGCAGA
■■Homology search results ■■ -
sp_hit_id P58301
Definition sp|P58301|RAD50_PYRFU DNA double-strand break repair rad50 ATPase OS=Pyrococcus furiosus
Align length 69
Score (bit) 33.1
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912100|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_B06.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58301|RAD50_PYRFU DNA double-strand break repair rad50 ATPas...    33   0.56 
sp|Q01649|CIK1_YEAST Spindle pole body-associated protein CIK1 O...    32   0.95 
sp|Q4FMZ1|FENR_PELUB Ferredoxin--NADP reductase OS=Pelagibacter ...    32   1.6  
sp|Q7SXU0|EI3JA_DANRE Eukaryotic translation initiation factor 3...    32   1.6  
sp|Q4PFE7|ATG2_USTMA Autophagy-related protein 2 OS=Ustilago may...    30   3.5  
sp|P97861|KRT86_MOUSE Keratin, type II cuticular Hb6 OS=Mus musc...    29   7.8  
sp|A1VAZ2|CNPD_DESVV 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    29   8.0  
sp|Q728D2|CNPD_DESVH 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    29   8.0  

>sp|P58301|RAD50_PYRFU DNA double-strand break repair rad50 ATPase
           OS=Pyrococcus furiosus GN=rad50 PE=1 SV=1
          Length = 882

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = +1

Query: 148 DTWDALRDWDKKVADSSYN---ELVRLDEFYRQARARVKEV----LLQKKVENYCKEFMN 306
           D + AL+++  +  D  Y    EL R++E   + + R++E+      ++K+EN  KE +N
Sbjct: 299 DAYLALKEFKNEYLDKKYKIEKELTRVEELINEIQKRIEELNEKESEKEKLENEKKEILN 358

Query: 307 SVKREEKDN 333
            +   EKD+
Sbjct: 359 KLAILEKDH 367


>sp|Q01649|CIK1_YEAST Spindle pole body-associated protein CIK1
           OS=Saccharomyces cerevisiae GN=CIK1 PE=1 SV=1
          Length = 594

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
 Frame = +1

Query: 43  QKEICALTTELSV--------------TKKHYAALHAAVYGPFEPGDGSDTWDALRDWDK 180
           Q EI  L+TE+ +              + K+  ++HA     FE     +  +A R+W  
Sbjct: 135 QNEIDGLSTEMDLKDNQCDLQRKNVELSSKNIVSMHAVKVQEFENDLEEELSNAKREWTY 194

Query: 181 KVAD-SSYNELVRLDEFYRQARARVKEV-----LLQKKVENYCKEFMNSVKRE 321
           K+ +  +     RL +  RQ +   +EV     +LQ + EN CK +   + ++
Sbjct: 195 KLMEVENLKPDERLTDEMRQLKTEFEEVNRKLFILQNENENECKNYKKELDKK 247


>sp|Q4FMZ1|FENR_PELUB Ferredoxin--NADP reductase OS=Pelagibacter
           ubique GN=SAR11_0627 PE=3 SV=1
          Length = 338

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = +1

Query: 157 DALRDWDKKVADSSYNELV-RLDEFYRQARA--RVKEVLLQKKVENYCKEFMNSVKREE 324
           D+  DW  +++ SSY  L+ R DEF     +  ++KE+    K++ Y K  +NSVK E+
Sbjct: 160 DSALDWAIELSKSSYVNLIHRRDEFTGAQLSIDKIKELEKSGKLKIYTKYQLNSVKGEQ 218


>sp|Q7SXU0|EI3JA_DANRE Eukaryotic translation initiation factor 3
           subunit J-A OS=Danio rerio GN=eif3ja PE=1 SV=1
          Length = 249

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 97  AALHAAVYGPFEPGDGSDTWDALRDWDKKVADSSYNELVRLDEFYRQARARVKEVLLQKK 276
           AA+H    G  E  D  D WD   + +K+  +    E    ++     + + KE L +KK
Sbjct: 21  AAVHDKWEGEDEDDDVKDNWDDDEEEEKEEEEEKKTEAKPTEKKKLSEKIKEKENLQRKK 80

Query: 277 VENYCKEFMNSVKRE 321
            E   K+ +   KR+
Sbjct: 81  QEELRKQQLEETKRD 95


>sp|Q4PFE7|ATG2_USTMA Autophagy-related protein 2 OS=Ustilago maydis
            GN=ATG2 PE=3 SV=1
          Length = 2081

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 329  TTLDQDSHFSGESVCNVALAAP 394
            TTLD D  F GESV +++L AP
Sbjct: 1425 TTLDSDEFFGGESVASLSLLAP 1446


>sp|P97861|KRT86_MOUSE Keratin, type II cuticular Hb6 OS=Mus
           musculus GN=Krt86 PE=2 SV=2
          Length = 486

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = +3

Query: 9   DGTCGSNACLSSK------GDLCSYNRAVSYKETLCGAPCS 113
           +G    N C+SS       GDLC    A +    +C APCS
Sbjct: 419 EGVGSVNVCVSSSRGGVVCGDLCVSGTAPAVNTRVCSAPCS 459


>sp|A1VAZ2|CNPD_DESVV 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=Dvul_0585 PE=3 SV=1
          Length = 519

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
 Frame = +1

Query: 178 KKVADSSYNELVR--LDEFYRQARARVKEVLLQKKVE--NYCKEFMNSVKREEKD 330
           K++ D+  NEL +  ++E  ++A+A+ KE+LLQ + E  N  +E  N  K  E++
Sbjct: 30  KRIGDA--NELAKRIVEEARKEAQAQKKEILLQGQDEIFNQKRELENEFKERERE 82


>sp|Q728D2|CNPD_DESVH 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=DVU_2671 PE=3 SV=1
          Length = 519

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
 Frame = +1

Query: 178 KKVADSSYNELVR--LDEFYRQARARVKEVLLQKKVE--NYCKEFMNSVKREEKD 330
           K++ D+  NEL +  ++E  ++A+A+ KE+LLQ + E  N  +E  N  K  E++
Sbjct: 30  KRIGDA--NELAKRIVEEARKEAQAQKKEILLQGQDEIFNQKRELENEFKERERE 82
tr_hit_id A7P568
Definition tr|A7P568|A7P568_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera
Align length 91
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912100|Adiantum capillus-veneris mRNA, clone:
YMU001_000015_B06.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P568|A7P568_VITVI Chromosome chr4 scaffold_6, whole genome ...    52   1e-05
tr|Q1H8M4|Q1H8M4_BETVU Regulator of chromosome condensation fami...    50   7e-05
tr|Q9LYD4|Q9LYD4_ARATH Putative uncharacterized protein F15N18_1...    47   5e-04
tr|Q93Z10|Q93Z10_ARATH AT5g11580/F15N18_170 OS=Arabidopsis thali...    47   5e-04
tr|Q8LCD8|Q8LCD8_ARATH Putative uncharacterized protein OS=Arabi...    47   5e-04
tr|Q5C1W2|Q5C1W2_SCHJA SJCHGC09058 protein (Fragment) OS=Schisto...    36   1.1  
tr|A4I352|A4I352_LEIIN Putative uncharacterized protein OS=Leish...    36   1.1  
tr|Q8IAS3|Q8IAS3_PLAF7 Erythrocyte membrane protein 1 (PfEMP1) O...    35   1.4  
tr|A7M388|A7M388_BACOV Putative uncharacterized protein OS=Bacte...    35   1.9  
tr|Q4FYM8|Q4FYM8_LEIMA Putative uncharacterized protein OS=Leish...    35   1.9  
tr|A0A1S5|A0A1S5_9ZZZZ Anaerobic sulfite reductase subunit A (Fr...    33   5.5  
tr|Q6FMT0|Q6FMT0_CANGA Similar to uniprot|P41834 Saccharomyces c...    33   5.5  
tr|Q54XS8|Q54XS8_DICDI Putative uncharacterized protein OS=Dicty...    33   7.0  
tr|Q6BGA8|Q6BGA8_PARTE Guanylate-binding protein, putative (Chro...    33   9.4  
tr|Q5DBU1|Q5DBU1_SCHJA SJCHGC07038 protein OS=Schistosoma japoni...    33   9.4  
tr|Q4GYE8|Q4GYE8_9TRYP Chaperone protein DNAJ, putative OS=Trypa...    33   9.4  
tr|Q974W8|Q974W8_SULTO Putative uncharacterized protein ST0542 O...    33   9.4  

>tr|A7P568|A7P568_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032419001
           PE=4 SV=1
          Length = 538

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
 Frame = +1

Query: 46  KEICALTTELSVTKKHYAALHAAVYG-PFEPGD------GSDTWDALRDWDKKVADSSYN 204
           KE+  L ++LS  +++ + LH +++G PFE  D       S  +D  ++W+  +  +   
Sbjct: 439 KEMKLLHSKLSTMERYASILHGSIFGKPFEEQDIPISLQNSGFFDIAKEWENMLESADRG 498

Query: 205 ELVRLDEFYRQARARVKEVLLQKKVENYCKE 297
           +LV L++FYR   A VK+ L++++++   KE
Sbjct: 499 KLVMLEKFYRNMLAGVKDKLMKRRIQEIIKE 529


>tr|Q1H8M4|Q1H8M4_BETVU Regulator of chromosome condensation family
           protein OS=Beta vulgaris GN=rcc PE=2 SV=1
          Length = 573

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
 Frame = +1

Query: 7   EMAPVDQMLALAQKEICALTTELSVTKKHYAALHAAVYG-PFEPGD------GSDTWDAL 165
           E+  VD+ ++   +E+  L ++LSV +++   LH +++G PFE  +       SD++D  
Sbjct: 458 EVTEVDEKVSPTLEEMKRLQSKLSVMERYVTILHGSLFGRPFEEREIPASLLESDSFDVS 517

Query: 166 RDWDKKVADSSYNELVRLDEFYRQARARVKEVLLQKKVENYCKEFMNS 309
             W   +  +   EL RL+ FY      VK+ ++++K++   +E + S
Sbjct: 518 EAWKTMLEAADRKELRRLEMFYGNMLDGVKDKIMKRKIQEIVRECLQS 565


>tr|Q9LYD4|Q9LYD4_ARATH Putative uncharacterized protein F15N18_170
           OS=Arabidopsis thaliana GN=F15N18_170 PE=4 SV=1
          Length = 541

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
 Frame = +1

Query: 22  DQMLALAQKEICALTTELSVTKKHYAALHAAVYG-PFEPGDG-------SDTWDALRDWD 177
           D   + + +EI  L ++L V +++ + LH +++G PF   +        S  +D  ++W 
Sbjct: 433 DDGKSASTEEIKRLESKLMVMERYASILHGSIFGKPFNEEEDIPYSLRVSGYFDMGKEWG 492

Query: 178 KKVADSSYNELVRLDEFYRQARARVKEVLLQKKVENYCKEFMNS 309
           + +  +  ++L+RL  FY     RVK+ +LQ++++   K+ + S
Sbjct: 493 EMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRIQEIMKDCLQS 536


>tr|Q93Z10|Q93Z10_ARATH AT5g11580/F15N18_170 OS=Arabidopsis thaliana
           GN=At5g11580 PE=2 SV=1
          Length = 553

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
 Frame = +1

Query: 22  DQMLALAQKEICALTTELSVTKKHYAALHAAVYG-PFEPGDG-------SDTWDALRDWD 177
           D   + + +EI  L ++L V +++ + LH +++G PF   +        S  +D  ++W 
Sbjct: 445 DDGKSASTEEIKRLESKLMVMERYASILHGSIFGKPFNEEEDIPYSLRVSGYFDMGKEWG 504

Query: 178 KKVADSSYNELVRLDEFYRQARARVKEVLLQKKVENYCKEFMNS 309
           + +  +  ++L+RL  FY     RVK+ +LQ++++   K+ + S
Sbjct: 505 EMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRIQEIMKDCLQS 548


>tr|Q8LCD8|Q8LCD8_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 553

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
 Frame = +1

Query: 22  DQMLALAQKEICALTTELSVTKKHYAALHAAVYG-PFEPGDG-------SDTWDALRDWD 177
           D   + + +EI  L ++L V +++ + LH +++G PF   +        S  +D  ++W 
Sbjct: 445 DDGKSASTEEIKRLESKLMVMERYASILHGSIFGKPFNEEEDIPYSLRVSGYFDMGKEWG 504

Query: 178 KKVADSSYNELVRLDEFYRQARARVKEVLLQKKVENYCKEFMNS 309
           + +  +  ++L+RL  FY     RVK+ +LQ++++   K+ + S
Sbjct: 505 EMLESADKSQLMRLQAFYEDMIGRVKDKVLQRRIQEIMKDCLQS 548


>tr|Q5C1W2|Q5C1W2_SCHJA SJCHGC09058 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 405

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 26/90 (28%), Positives = 43/90 (47%)
 Frame = +1

Query: 61  LTTELSVTKKHYAALHAAVYGPFEPGDGSDTWDALRDWDKKVADSSYNELVRLDEFYRQA 240
           L +EL    K  A L   VY  F               DK++ D     + + DE+ RQ 
Sbjct: 108 LKSELDTQIKEQAELRKKVYEEFLH-------------DKQMVDEVVRRIKQEDEYERQK 154

Query: 241 RARVKEVLLQKKVENYCKEFMNSVKREEKD 330
           R + KE L++K++++Y KE    +K E+++
Sbjct: 155 RQKRKE-LIRKEIDHYKKEREEHIKAEKEN 183


>tr|A4I352|A4I352_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ27.2140 PE=4 SV=1
          Length = 570

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 61  LTTELSVTKKHYAALHAAVYGPFEPGDGSDTWDAL--RDWDKKVADSSYNE 207
           +TT L   K HY+     V G  EPG+G     AL  R W + VAD SY++
Sbjct: 160 ITTYLQQRKAHYSWAKLIVSGCCEPGEGEVKMSALLRRLWAETVADGSYSQ 210


>tr|Q8IAS3|Q8IAS3_PLAF7 Erythrocyte membrane protein 1 (PfEMP1)
           OS=Plasmodium falciparum (isolate 3D7) GN=VAR PE=4 SV=1
          Length = 2265

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +1

Query: 106 HAAVYGPFEPGDGSDTWDALRDWDKKVADSSYNELVRLDEFYRQARARVKEVLLQKKVEN 285
           H   Y    PG GS T  AL    +  AD    ++VR  + YR  + ++K    + K+E 
Sbjct: 168 HLEQYDATYPGSGSTTCTALA---RSFAD--IGDIVRGRDLYRGNKKKIKTETERDKLEQ 222

Query: 286 YCKEFMNSVKREEKDNIGS 342
             KE   ++K+E  + + S
Sbjct: 223 KLKEIFKNIKKENNEKLKS 241


>tr|A7M388|A7M388_BACOV Putative uncharacterized protein
           OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_04576 PE=4
           SV=1
          Length = 242

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
 Frame = +1

Query: 13  APVDQMLALAQKEICALTTELSVTKKHYAALHAAVYGPF-EPGDGSDTWDALRDWDKKVA 189
           A + Q L   +K + A+  ELS   K Y+   AA Y  + E  +   +W+ L    + V 
Sbjct: 21  AVLAQDLKEMEKNLSAINEELSQKTKEYSWQLAAAYADYCEANNKYISWNDLPYLQQVV- 79

Query: 190 DSSYNELVRLDEFYRQARARVKEV----LLQKKVENYCKEFMNSVKREEKDNIGSG*SLF 357
              Y     L+ +  + +A  +E+       K+ ++  K+   +V +EEKD + +  S F
Sbjct: 80  --EYERPASLETYRLEHKANKEELDKFLNTYKEYKDLVKKQKEAVTKEEKDAVSTAFSAF 137

Query: 358 W 360
           W
Sbjct: 138 W 138


>tr|Q4FYM8|Q4FYM8_LEIMA Putative uncharacterized protein
           OS=Leishmania major strain Friedlin GN=LMJ_0351 PE=4
           SV=1
          Length = 585

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 61  LTTELSVTKKHYAALHAAVYGPFEPGDGSDTWDAL--RDWDKKVADSSYNE 207
           +TT L   K HY+     V G  EPG+G     AL  R W + VAD SY++
Sbjct: 160 ITTYLQQRKAHYSWAKLIVSGCCEPGEGEVKISALLRRLWAETVADGSYSQ 210