BP912086
Clone id YMU001_000012_H07
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACGGGGATCAATCAATCATTACTAGTTAAGTTCCCCGCTTGGCCTGCCTGCCAATTATC
ACCTGACCATCCCATTGCCAAGCCGAAAATCCTAGCCGCAAGCTCACGTGTGCCGACTCG
AAAGTGCCCGGCTCCTACCGCATTTCGAGATTCCCCAAAATCCCGAACCGAGGCCGCAAA
AATGCTAGATTTCATCTGCAATTAACTCCGAGCAACTGCACCCAATCTTCCGACTTCCAT
AACTTTCCGCTCCGAACTCCGTTTGACAAGCAGTCAATCCCTGCTAAGTCCATATGATGC
ATACCTCGCTCTAGAACTCTGTCGAAGTCCAAAAAATACCATATGGCACGGCTCCCCATG
CAATCACGTGGGCATCAACCGGACCCCTGGCAAAACTTCAAATGGCCATATCCAACAATC
TGTAGCTCCGATCTGCAATCTGAAAAGACTAGCATGCTCCATAAATTGAGCACTACGCGT
CTATACACTGACATCACCTTGGACCACCTGTCCCTAGCTGCCCTATCCGGCAAGAA
■■Homology search results ■■ -
sp_hit_id Q84JS6
Definition sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana
Align length 34
Score (bit) 31.2
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912086|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_H07.
(536 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6 OS=Arabi... 31 3.3
sp|Q99KW3|TARA_MOUSE TRIO and F-actin-binding protein OS=Mus mus... 31 4.3
sp|Q4WYE5|MUS81_ASPFU Crossover junction endonuclease mus81 OS=A... 31 4.3
sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN... 31 4.3
sp|Q2JFH0|RS3_FRASC 30S ribosomal protein S3 OS=Frankia sp. (str... 30 5.7
sp|P56668|KNX11_MAIZE Homeobox protein knotted-1-like 11 (Fragme... 30 5.7
sp|P56663|KNOX5_MAIZE Homeobox protein knotted-1-like 5 (Fragmen... 30 5.7
sp|Q7GDL5|KNOSA_ORYSJ Homeobox protein knotted-1-like 10 OS=Oryz... 30 5.7
sp|A2Y007|KNOSA_ORYSI Homeobox protein knotted-1-like 10 OS=Oryz... 30 5.7
sp|Q5VWN6|CJ018_HUMAN Uncharacterized protein C10orf18 OS=Homo s... 30 5.7
sp|Q66HX0|S35B1_DANRE Solute carrier family 35 member B1 OS=Dani... 30 7.4
sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinas... 30 7.4
sp|P46640|KNAT2_ARATH Homeobox protein knotted-1-like 2 OS=Arabi... 30 7.4
sp|Q43484|KNOX3_HORVU Homeobox protein KNOX3 OS=Hordeum vulgare ... 30 9.7
sp|Q75LX7|KNOS4_ORYSJ Homeobox protein knotted-1-like 4 OS=Oryza... 30 9.7
sp|O04134|KNAP1_MALDO Homeobox protein knotted-1-like 1 OS=Malus... 30 9.7
sp|Q0CHV5|IML1_ASPTN Vacuolar membrane-associated protein iml1 O... 30 9.7

>sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6
OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1
Length = 327

Score = 31.2 bits (69), Expect = 3.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1

Query: 319 LSKSKKYHMARLPMQSRGHQPDPWQ-NFKWPYPT 417
L SKK +LP ++R D W ++KWPYPT
Sbjct: 242 LEFSKKKKKGKLPREARQALLDWWNLHYKWPYPT 275


>sp|Q99KW3|TARA_MOUSE TRIO and F-actin-binding protein OS=Mus musculus
GN=Triobp PE=1 SV=3
Length = 2014

Score = 30.8 bits (68), Expect = 4.3
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1

Query: 304 PRSRTLSKSKKYHMARLPMQSRGHQPDPWQNFKWPYPTICSSDLQSEKTS 453
P S + + RL SR HQP P W P CS LQ E ++
Sbjct: 1154 PPSNGIQGAPPRGQGRLQELSRPHQPTPSSENSWAGPAECSCALQPEAST 1203


>sp|Q4WYE5|MUS81_ASPFU Crossover junction endonuclease mus81
OS=Aspergillus fumigatus GN=mus81 PE=3 SV=1
Length = 596

Score = 30.8 bits (68), Expect = 4.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2

Query: 206 LRATAPNLPTSITFRSELRLTSSQSLLSPYDAYLALELC 322
LRA P++ S+TF + LTS +LS D +L + +C
Sbjct: 491 LRARDPSVTYSVTFSTFSALTSKSDILSLRDVFLKMLMC 529


>sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN-1
PE=2 SV=1
Length = 359

Score = 30.8 bits (68), Expect = 4.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1

Query: 328 SKKYHMARLPMQSRGHQPDPW-QNFKWPYPTICSSDLQSEKTSM 456
SKK +LP ++R W Q++KWPYP+ +E T +
Sbjct: 263 SKKKKKGKLPKEARQQLLSWWDQHYKWPYPSETQKVALAESTGL 306


>sp|Q2JFH0|RS3_FRASC 30S ribosomal protein S3 OS=Frankia sp. (strain
CcI3) GN=rpsC PE=3 SV=1
Length = 315

Score = 30.4 bits (67), Expect = 5.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2

Query: 35 PAWPACQLSPDHPIAKPKILAASSRVPTRKCPAPTAFRDSPKSRTE 172
PA A P P+A+P AAS+ PA A ++P+ E
Sbjct: 270 PAGEAAATEPTAPVAEPATAAASAPAEAASAPAEAAVANTPEKAEE 315


>sp|P56668|KNX11_MAIZE Homeobox protein knotted-1-like 11 (Fragment)
OS=Zea mays GN=KNOX11 PE=3 SV=1
Length = 88

Score = 30.4 bits (67), Expect = 5.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1

Query: 307 RSRTLSKSKKYHMARLPMQSRGHQPDPWQ-NFKWPYPT 417
RS L K KK +LP +R D W +++WPYPT
Sbjct: 21 RSEFLKKRKK---GKLPKDARSALMDWWNTHYRWPYPT 55


>sp|P56663|KNOX5_MAIZE Homeobox protein knotted-1-like 5 (Fragment)
OS=Zea mays GN=KNOX5 PE=2 SV=1
Length = 85

Score = 30.4 bits (67), Expect = 5.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1

Query: 307 RSRTLSKSKKYHMARLPMQSRGHQPDPWQ-NFKWPYPT 417
RS L K KK +LP +R D W +++WPYPT
Sbjct: 18 RSEFLKKRKK---GKLPKDARSALMDWWNTHYRWPYPT 52


>sp|Q7GDL5|KNOSA_ORYSJ Homeobox protein knotted-1-like 10 OS=Oryza
sativa subsp. japonica GN=OSH71 PE=2 SV=1
Length = 311

Score = 30.4 bits (67), Expect = 5.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1

Query: 307 RSRTLSKSKKYHMARLPMQSRGHQPDPWQ-NFKWPYPT 417
RS L K KK +LP +R D W +++WPYPT
Sbjct: 214 RSEFLKKRKK---GKLPKDARSALMDWWNTHYRWPYPT 248


>sp|A2Y007|KNOSA_ORYSI Homeobox protein knotted-1-like 10 OS=Oryza
sativa subsp. indica GN=OSH71 PE=2 SV=2
Length = 311

Score = 30.4 bits (67), Expect = 5.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1

Query: 307 RSRTLSKSKKYHMARLPMQSRGHQPDPWQ-NFKWPYPT 417
RS L K KK +LP +R D W +++WPYPT
Sbjct: 214 RSEFLKKRKK---GKLPKDARSALMDWWNTHYRWPYPT 248


>sp|Q5VWN6|CJ018_HUMAN Uncharacterized protein C10orf18 OS=Homo
sapiens GN=C10orf18 PE=1 SV=1
Length = 2430

Score = 30.4 bits (67), Expect = 5.7
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 16/140 (11%)
Frame = +2

Query: 53 QLSPDHPIAKPKILAASSRVPTRKCPAPTAFRDSP-----KSRTEAAKMLD--FICN*LR 211
Q PD P+ KPK S+RV C D K TE A LD + N L
Sbjct: 708 QKPPDDPVVKPKDRPPSARVKKSSCSRIVLSCDDSVKITFKCETEYAFSLDSKYTNNPLE 767

Query: 212 ATA---------PNLPTSITFRSELRLTSSQSLLSPYDAYLALELCRSPKNTIWHGSPCN 364
T +LP ++ E++L + Y ++ RS + + H +P
Sbjct: 768 KTVVRALHGPWNTDLPDNV---EEVKLLLHMWVALFYSN--QNKIIRSSRKVVEHSNPAK 822

Query: 365 HVGINRTPGKTSNGHIQQSV 424
+V IN T I++S+
Sbjct: 823 YVSINSTLESCELREIEESL 842


tr_hit_id A7T5Z2
Definition tr|A7T5Z2|A7T5Z2_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 110
Score (bit) 36.2
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912086|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_H07.
(536 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7T5Z2|A7T5Z2_NEMVE Predicted protein (Fragment) OS=Nematoste... 36 1.1
tr|A5BQK0|A5BQK0_VITVI Putative uncharacterized protein OS=Vitis... 34 4.2
tr|Q84ZW2|Q84ZW2_SOLLC Knotted protein TKN4 OS=Solanum lycopersi... 34 5.5
tr|Q7Y0Z5|Q7Y0Z5_SOLLC Knotted homeodomain protein 4 (Fragment) ... 34 5.5
tr|O80410|O80410_IPONI Pharbitis kntted-like gene 2 short produc... 33 7.2
tr|O80409|O80409_IPONI Pharbitis kntted-like gene 2 OS=Ipomoea n... 33 7.2
tr|B2NIL5|B2NIL5_IPOBA Class-I knotted1-like homeobox protein IB... 33 7.2
tr|A3AZL5|A3AZL5_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.3

>tr|A7T5Z2|A7T5Z2_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g65358 PE=4 SV=1
Length = 242

Score = 36.2 bits (82), Expect = 1.1
Identities = 32/110 (29%), Positives = 43/110 (39%)
Frame = +1

Query: 88 NPSRKLTCADSKVPGSYRISRFPKIPNRGRKNARFHLQLTPSNCTQSSDFHNFPLRTPFD 267
NPSR L K P Y SR PN PS +S + + +P +
Sbjct: 73 NPSRPL-----KSPNHYPYSRVKYYPN-------------PSRPLKSPNHYPYPRVKYYP 114

Query: 268 KQSIPAKSI*CIPRSRTLSKSKKYHMARLPMQSRGHQPDPWQNFKWPYPT 417
S P KS P S+ K Y P++S H P PW + +P P+
Sbjct: 115 NPSRPLKS----PNHYPYSRVKYYPNPSRPLKSPNHYPYPWVKY-YPNPS 159


>tr|A5BQK0|A5BQK0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041829 PE=4 SV=1
Length = 1593

Score = 34.3 bits (77), Expect = 4.2
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2

Query: 197 CN*LRATAPNLPTSITFRSELRLTSSQSLLSPYDAYLALELCRSPKNTIWHGSPCNHVGI 376
C+ LR + TS+ +R +L +S LS D + AL + ++IW P H G
Sbjct: 1337 CSYLRCINSRIITSVKYRLDLLYVPIESFLSYQDKWDALVVILGAASSIWRSDPYFHFGH 1396

Query: 377 NRTP 388
TP
Sbjct: 1397 LITP 1400


>tr|Q84ZW2|Q84ZW2_SOLLC Knotted protein TKN4 OS=Solanum lycopersicum
GN=kn4 PE=2 SV=1
Length = 335

Score = 33.9 bits (76), Expect = 5.5
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1

Query: 199 QLTPSNCTQSSDFHNFPLRTPFDKQSIPAKSI*CIPRSRTLSKSKKYHMARLPMQSRGHQ 378
Q +P+NC ++ +R K S S+ R L K KK +LP ++R
Sbjct: 211 QESPANCEGDNELKEMLMR----KYSGYLSSL----RKEFLKKRKK---GKLPKEARIVL 259

Query: 379 PDPWQN-FKWPYPTICSSDLQSEKTSMLHK 465
D W+N ++WPYPT + SE T + K
Sbjct: 260 LDWWKNHYRWPYPTEEEKNRLSEMTGLDQK 289


>tr|Q7Y0Z5|Q7Y0Z5_SOLLC Knotted homeodomain protein 4 (Fragment)
OS=Solanum lycopersicum GN=KN4 PE=2 SV=1
Length = 338

Score = 33.9 bits (76), Expect = 5.5
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1

Query: 199 QLTPSNCTQSSDFHNFPLRTPFDKQSIPAKSI*CIPRSRTLSKSKKYHMARLPMQSRGHQ 378
Q +P+NC ++ +R K S S+ R L K KK +LP ++R
Sbjct: 214 QESPANCEGDNELKEMLMR----KYSGYLSSL----RKEFLKKRKK---GKLPKEARIVL 262

Query: 379 PDPWQN-FKWPYPTICSSDLQSEKTSMLHK 465
D W+N ++WPYPT + SE T + K
Sbjct: 263 LDWWKNHYRWPYPTEEEKNRLSEMTGLDQK 292


>tr|O80410|O80410_IPONI Pharbitis kntted-like gene 2 short product 1
OS=Ipomoea nil GN=PKn2s1 PE=2 SV=1
Length = 237

Score = 33.5 bits (75), Expect = 7.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1

Query: 310 SRTLSKSKKYHMARLPMQSRGHQPDPWQN-FKWPYPTICSSDLQSEKTSMLHK 465
S L SKK +LP ++R D W + +KWPYPT +E T + K
Sbjct: 147 SLKLEFSKKKKKGKLPKEARQTLLDWWSDHYKWPYPTEADKIALAESTGLDQK 199


>tr|O80409|O80409_IPONI Pharbitis kntted-like gene 2 OS=Ipomoea nil
GN=PKn2 PE=2 SV=1
Length = 322

Score = 33.5 bits (75), Expect = 7.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1

Query: 310 SRTLSKSKKYHMARLPMQSRGHQPDPWQN-FKWPYPTICSSDLQSEKTSMLHK 465
S L SKK +LP ++R D W + +KWPYPT +E T + K
Sbjct: 232 SLKLEFSKKKKKGKLPKEARQTLLDWWSDHYKWPYPTEADKIALAESTGLDQK 284


>tr|B2NIL5|B2NIL5_IPOBA Class-I knotted1-like homeobox protein IBKN4
OS=Ipomoea batatas GN=Ibkn4 PE=2 SV=1
Length = 314

Score = 33.5 bits (75), Expect = 7.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1

Query: 310 SRTLSKSKKYHMARLPMQSRGHQPDPWQN-FKWPYPTICSSDLQSEKTSMLHK 465
S L SKK +LP ++R D W + +KWPYPT +E T + K
Sbjct: 224 SLKLEFSKKKKKGKLPKEARQTLLDWWSDHYKWPYPTEADKIALAESTGLDQK 276


>tr|A3AZL5|A3AZL5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016237 PE=3 SV=1
Length = 174

Score = 33.1 bits (74), Expect = 9.3
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1

Query: 307 RSRTLSKSKKYHMARLPMQSRGHQPDPWQ-NFKWPYPTICS-SDLQSEKTSMLHKLSTTR 480
RS L K KK +LP +R D W +++WPYPT+ S L + + H
Sbjct: 48 RSEFLKKRKK---GKLPKDARSALMDWWNTHYRWPYPTVMSRKRLFDTQKPLTHTDLGLC 104

Query: 481 LYTDITL--DHLSLAALSG 531
L D++ D + LAA++G
Sbjct: 105 LPIDLSQEEDKVRLAAMTG 123