BP912061 |
Clone id |
YMU001_000012_F01 |
Library |
YMU01 |
Length |
532 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000012_F01. |
Accession |
BP912061 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GGGGATGGCTAAGGCAAACAGGAGCATGAGCAGCAGCAGCAATGCCACAAAACACTTTCT TCCAGTCGATCCTAAATAGCTTCACAACTAACAAAAACATGCTTTTCGGTCTTCAGATGA CCAAATTTCTACTTGCAGCAAACAATCTGCCTTCGTGATAATAAGGTTAAGATTTCCAAT GGGAAAAAAATGCAGGAAGAGAGAATTTCATCTGCACAAGATAACATAGGTTAACCTTTT CAAAAGGATGTAATTGAAATCTTCTAAATCATGCCTCGATTTGTCCCAGCAATACTTTGA CTACATCAACTTCAAAGTTACCACAATTTGTAAATCATGAGAGAGGCAAATAGTGCACCC ACCACAACTCCTTTGTTCTCGAGGGTCTACAACAAGCAATCTGTCAGCACCTCCCCACCA ATCGGAGATGTCACAATACCCTGTGCATATCATCTCGGTCAGTATCAGACTTCAAGCTCA TAATTTACAAGCAACATTAGGCTGTTTCAGAAAACTACTCTGGAGTAGATAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6ZJW9 |
Definition |
sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp. japonica |
Align length |
28 |
Score (bit) |
42.0 |
E-value |
0.002 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TIK0 |
Definition |
tr|A9TIK0|A9TIK0_PHYPA Actin-related protein ARP4 OS=Physcomitrella patens subsp. patens |
Align length |
33 |
Score (bit) |
42.7 |
E-value |
0.011 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912061|Adiantum capillus-veneris mRNA, clone: YMU001_000012_F01. (532 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TIK0|A9TIK0_PHYPA Actin-related protein ARP4 OS=Physcomitre... 43 0.011 tr|B8BAL4|B8BAL4_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.019 tr|B7ERY7|B7ERY7_ORYSJ cDNA clone:J033050O03, full insert sequen... 42 0.019 tr|B6TTQ6|B6TTQ6_MAIZE Actin-like protein 6A OS=Zea mays PE=2 SV=1 40 0.056 tr|B4FNB4|B4FNB4_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.056 tr|B7FM82|B7FM82_MEDTR Putative uncharacterized protein OS=Medic... 40 0.074 tr|B7FM30|B7FM30_MEDTR Putative uncharacterized protein OS=Medic... 40 0.074 tr|Q5FAM0|Q5FAM0_BRAOL Putative Acttin-related protein 4 (ARP4) ... 40 0.096 tr|A9SCW1|A9SCW1_PHYPA Actin-related protein Arp4 OS=Physcomitre... 37 0.62 tr|A7PGQ2|A7PGQ2_VITVI Chromosome chr17 scaffold_16, whole genom... 36 1.1 tr|Q4DPJ9|Q4DPJ9_TRYCR Dispersed gene family protein 1 (DGF-1), ... 34 4.1 tr|Q12W09|Q12W09_METBU Putative uncharacterized protein OS=Metha... 34 4.1 tr|Q3R789|Q3R789_XYLFA Putative uncharacterized protein OS=Xylel... 33 6.9 tr|B7FVL5|B7FVL5_PHATR Predicted protein OS=Phaeodactylum tricor... 33 7.0 tr|B4KPL7|B4KPL7_DROMO GI20352 OS=Drosophila mojavensis GN=GI203... 33 9.2
>tr|A9TIK0|A9TIK0_PHYPA Actin-related protein ARP4 OS=Physcomitrella patens subsp. patens GN=ARP1508 PE=3 SV=1 Length = 451
Score = 42.7 bits (99), Expect = 0.011 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVVGALFA 345 + +V SPIGGEVLTDCL TLE KG+++ F+ Sbjct: 205 KAVVRSPIGGEVLTDCLQRTLEAKGIIIRPRFS 237
>tr|B8BAL4|B8BAL4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27738 PE=4 SV=1 Length = 443
Score = 42.0 bits (97), Expect = 0.019 Identities = 17/28 (60%), Positives = 24/28 (85%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + TSPIGGE LTDC++ +LE+KGVV+ Sbjct: 200 KSVATSPIGGEFLTDCMMKSLESKGVVI 227
>tr|B7ERY7|B7ERY7_ORYSJ cDNA clone:J033050O03, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 443
Score = 42.0 bits (97), Expect = 0.019 Identities = 17/28 (60%), Positives = 24/28 (85%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + TSPIGGE LTDC++ +LE+KGVV+ Sbjct: 200 KSVATSPIGGEFLTDCMMKSLESKGVVI 227
>tr|B6TTQ6|B6TTQ6_MAIZE Actin-like protein 6A OS=Zea mays PE=2 SV=1 Length = 443
Score = 40.4 bits (93), Expect = 0.056 Identities = 15/28 (53%), Positives = 24/28 (85%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + TSP+GGE LTDC++ +LE+KG+V+ Sbjct: 200 KSVSTSPVGGEFLTDCMMKSLESKGIVI 227
>tr|B4FNB4|B4FNB4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 443
Score = 40.4 bits (93), Expect = 0.056 Identities = 15/28 (53%), Positives = 24/28 (85%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + TSP+GGE LTDC++ +LE+KG+V+ Sbjct: 200 KSVSTSPVGGEFLTDCMMKSLESKGIVI 227
>tr|B7FM82|B7FM82_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 298
Score = 40.0 bits (92), Expect = 0.074 Identities = 16/28 (57%), Positives = 23/28 (82%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + TSPIGGE LTDCL+ +LE+KG+ + Sbjct: 201 KAVATSPIGGEFLTDCLMKSLESKGIAM 228
>tr|B7FM30|B7FM30_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 445
Score = 40.0 bits (92), Expect = 0.074 Identities = 16/28 (57%), Positives = 23/28 (82%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + TSPIGGE LTDCL+ +LE+KG+ + Sbjct: 201 KAVATSPIGGEFLTDCLMKSLESKGIAM 228
>tr|Q5FAM0|Q5FAM0_BRAOL Putative Acttin-related protein 4 (ARP4) OS=Brassica oleracea GN=B21F5.6 PE=3 SV=1 Length = 442
Score = 39.7 bits (91), Expect = 0.096 Identities = 16/28 (57%), Positives = 24/28 (85%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + +V++PIGGE LTDCLL +LE+KG+ + Sbjct: 198 KAVVSAPIGGEFLTDCLLKSLESKGIKI 225
>tr|A9SCW1|A9SCW1_PHYPA Actin-related protein Arp4 OS=Physcomitrella patens subsp. patens GN=ARP1509 PE=3 SV=1 Length = 443
Score = 37.0 bits (84), Expect = 0.62 Identities = 18/26 (69%), Positives = 20/26 (76%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGV 366 + IV S IGGEVLTDCL TLE KG+ Sbjct: 193 KAIVRSAIGGEVLTDCLQRTLEAKGI 218
>tr|A7PGQ2|A7PGQ2_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017642001 PE=3 SV=1 Length = 419
Score = 36.2 bits (82), Expect = 1.1 Identities = 13/28 (46%), Positives = 23/28 (82%) Frame = -3
Query: 443 QGIVTSPIGGEVLTDCLL*TLENKGVVV 360 + + +SPIGGE LT+C++ +LE+KG+ + Sbjct: 175 KAVASSPIGGEFLTECMMKSLESKGISI 202
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