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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912022
Clone id YMU001_000012_B05
Library
Length 391
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAGGAGTCTACAACAGGAAAGAAGAAGAGAGCCAATGAAAGGTAAGACAAAAGGCCCAA
CTTATAAACTACAATCTGATATTGAGGTTGCTACAGATTTAAAGAAAGTCTTGGCAGGAA
AGGATCTTGAATAGCAAGATTGAGTTTACTCTGGGAGAAGTTCTGGGCATTGCAAAGCGT
GAATTCCATGAGGAGATCATTGAGCATCATCAAGAGAAAGAGGCAAACCCTTGCTGAAGT
TTCTCGTCCACAAGTTGAAGGGGAAACCTCAAAGACACAGAGGGATGCAACTGCAAAATA
AGGAGAATGATGGAGCTGTGGTAGGATGCTACCAATCTAGTGGGAGAGTGAAGCAAGTGT
ATTTATCAAATGATGATGAAGAAGTTGAAGA
■■Homology search results ■■ -
sp_hit_id P96195
Definition sp|P96195|LEUC_AZOVI 3-isopropylmalate dehydratase large subunit OS=Azotobacter vinelandii
Align length 38
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912022|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_B05.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P96195|LEUC_AZOVI 3-isopropylmalate dehydratase large subunit...    30   3.8  
sp|P45274|AMPN_HAEIN Aminopeptidase N OS=Haemophilus influenzae ...    29   6.4  
sp|Q65CZ5|HTPG_BACLD Chaperone protein htpG OS=Bacillus lichenif...    29   8.4  
sp|P46082|BXEN_CLOBO Botulinum neurotoxin type E, nontoxic compo...    29   8.4  

>sp|P96195|LEUC_AZOVI 3-isopropylmalate dehydratase large subunit
           OS=Azotobacter vinelandii GN=leuC PE=3 SV=1
          Length = 470

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 149 LWEKFWALQSVNSMRRSLSIIKRKRQTLAEVSRPQVEG 262
           L++K W +  V       S+I   RQ L EV+ PQV G
Sbjct: 6   LYDKLWDMHEVKRRDDGSSLIYIDRQILHEVTSPQVRG 43


>sp|P45274|AMPN_HAEIN Aminopeptidase N OS=Haemophilus influenzae
           GN=pepN PE=3 SV=1
          Length = 869

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 216 ERGKPLLKFLVHKLKGKPQRHRGMQLQNKENDGAVVGC 329
           E+G  +++ L H L G+    +GMQL   ENDG    C
Sbjct: 383 EKGAEVIRML-HTLLGEQGFQKGMQLYIAENDGKAATC 419


>sp|Q65CZ5|HTPG_BACLD Chaperone protein htpG OS=Bacillus
           licheniformis (strain DSM 13 / ATCC 14580) GN=htpG PE=3
           SV=1
          Length = 626

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 262 PFNLWTRNFSKGLPLSLDDAQ*SPHGIHALQ-CPELLPE 149
           PFN +T+ F KGL L         +G+  ++ CP+LLP+
Sbjct: 290 PFNYYTKEFEKGLEL-------YSNGVLIMEKCPDLLPD 321


>sp|P46082|BXEN_CLOBO Botulinum neurotoxin type E, nontoxic
           component OS=Clostridium botulinum GN=ent-120 PE=4 SV=1
          Length = 1162

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 252 KLKGKPQRHRGMQLQNKENDGAVVGCYQSSGRVKQVYLSN 371
           KL G  + + G ++   ENDG V     S+G  K +YLSN
Sbjct: 883 KLIGSKEDNCGWEIYF-ENDGLVFNIIDSNGNEKNIYLSN 921
tr_hit_id A9TLY3
Definition tr|A9TLY3|A9TLY3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 31
Score (bit) 47.4
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912022|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_B05.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLY3|A9TLY3_PHYPA Predicted protein OS=Physcomitrella paten...    47   1e-09
tr|A9SMK9|A9SMK9_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-09
tr|A9SUM8|A9SUM8_PHYPA Predicted protein OS=Physcomitrella paten...    46   1e-08
tr|A9RP16|A9RP16_PHYPA Predicted protein OS=Physcomitrella paten...    46   1e-08
tr|A9SU30|A9SU30_PHYPA Predicted protein OS=Physcomitrella paten...    45   3e-08
tr|A9TLS3|A9TLS3_PHYPA Predicted protein OS=Physcomitrella paten...    44   3e-08
tr|A9TMV1|A9TMV1_PHYPA Predicted protein OS=Physcomitrella paten...    42   5e-08
tr|A9RID4|A9RID4_PHYPA Predicted protein OS=Physcomitrella paten...    43   6e-08
tr|A9T5Y4|A9T5Y4_PHYPA Predicted protein OS=Physcomitrella paten...    44   7e-08
tr|A9T9C2|A9T9C2_PHYPA Predicted protein OS=Physcomitrella paten...    40   8e-08
tr|A9SBL6|A9SBL6_PHYPA Predicted protein OS=Physcomitrella paten...    40   8e-08
tr|A9TWG5|A9TWG5_PHYPA Predicted protein OS=Physcomitrella paten...    40   8e-08
tr|A9RCF3|A9RCF3_PHYPA Predicted protein OS=Physcomitrella paten...    40   8e-08
tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella paten...    42   8e-08
tr|A9SP90|A9SP90_PHYPA Predicted protein OS=Physcomitrella paten...    44   9e-08
tr|A9T007|A9T007_PHYPA Predicted protein OS=Physcomitrella paten...    40   1e-07
tr|A9TW93|A9TW93_PHYPA Predicted protein OS=Physcomitrella paten...    44   1e-07
tr|A9RCA2|A9RCA2_PHYPA Predicted protein OS=Physcomitrella paten...    41   1e-07
tr|A9RWA4|A9RWA4_PHYPA Predicted protein OS=Physcomitrella paten...    40   1e-07
tr|A9RT73|A9RT73_PHYPA Predicted protein OS=Physcomitrella paten...    41   2e-07
tr|A9TQX3|A9TQX3_PHYPA Predicted protein OS=Physcomitrella paten...    41   2e-07
tr|A9TQ49|A9TQ49_PHYPA Predicted protein OS=Physcomitrella paten...    39   2e-07
tr|A9TQ71|A9TQ71_PHYPA Predicted protein OS=Physcomitrella paten...    41   2e-07
tr|A9U4P9|A9U4P9_PHYPA Predicted protein OS=Physcomitrella paten...    40   3e-07
tr|A9SM21|A9SM21_PHYPA Predicted protein OS=Physcomitrella paten...    39   3e-07
tr|A9TZK3|A9TZK3_PHYPA Predicted protein OS=Physcomitrella paten...    40   3e-07
tr|A9RJ89|A9RJ89_PHYPA Predicted protein OS=Physcomitrella paten...    39   4e-07
tr|A9SRH0|A9SRH0_PHYPA Predicted protein OS=Physcomitrella paten...    39   4e-07
tr|A9RAT5|A9RAT5_PHYPA Predicted protein OS=Physcomitrella paten...    40   4e-07
tr|A9RIU3|A9RIU3_PHYPA Predicted protein OS=Physcomitrella paten...    40   7e-07

>tr|A9TLY3|A9TLY3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94474 PE=4 SV=1
          Length = 260

 Score = 47.4 bits (111), Expect(2) = 1e-09
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           + RE  K K K PTYKLQSDIEVATDLKK+L
Sbjct: 139 KEREIGKEKAKAPTYKLQSDIEVATDLKKIL 169



 Score = 38.1 bits (87), Expect(2) = 1e-09
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAK 177
           +K  +ERIL+ K+EFT+GE+LGIAK
Sbjct: 166 KKILEERILSEKVEFTIGEILGIAK 190


>tr|A9SMK9|A9SMK9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_81432 PE=4 SV=1
          Length = 460

 Score = 47.0 bits (110), Expect(2) = 5e-09
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           + RE  K KTK P YKLQSDIE ATDLKKVL
Sbjct: 355 KEREIRKEKTKAPAYKLQSDIEAATDLKKVL 385



 Score = 36.6 bits (83), Expect(2) = 5e-09
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAKR 180
           +K  +ERIL+ K+EFT+GE+L IAKR
Sbjct: 382 KKVLEERILSRKVEFTIGEILRIAKR 407


>tr|A9SUM8|A9SUM8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84202 PE=4 SV=1
          Length = 238

 Score = 45.8 bits (107), Expect(2) = 1e-08
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           ++RE  K K K P YKLQSDIE ATDLKKVL
Sbjct: 7   KKREIRKEKAKAPAYKLQSDIEAATDLKKVL 37



 Score = 36.6 bits (83), Expect(2) = 1e-08
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAK 177
           +K  +E+IL+ K+EFT+GE+LGIAK
Sbjct: 34  KKVLEEQILSGKVEFTIGEILGIAK 58


>tr|A9RP16|A9RP16_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68639 PE=4 SV=1
          Length = 158

 Score = 46.2 bits (108), Expect(2) = 1e-08
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           + RE  K K K PTYKLQSDIE ATDLKKVL
Sbjct: 7   KEREIGKEKAKAPTYKLQSDIEAATDLKKVL 37



 Score = 35.8 bits (81), Expect(2) = 1e-08
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAKR 180
           +K  +ERIL+ K+EF +GE+LGIAK+
Sbjct: 34  KKVLEERILSRKVEFIIGEILGIAKQ 59


>tr|A9SU30|A9SU30_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84011 PE=4 SV=1
          Length = 293

 Score = 44.7 bits (104), Expect(2) = 3e-08
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           ++RE  K K K P YKLQSDIE ATDLKKVL
Sbjct: 122 KKRELEKQKAKAPAYKLQSDIESATDLKKVL 152



 Score = 36.2 bits (82), Expect(2) = 3e-08
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAK 177
           +K  +ERIL+ K+EFT+GE+LGI K
Sbjct: 149 KKVLEERILSGKVEFTIGEILGIIK 173


>tr|A9TLS3|A9TLS3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94415 PE=4 SV=1
          Length = 107

 Score = 44.3 bits (103), Expect(2) = 3e-08
 Identities = 22/31 (70%), Positives = 23/31 (74%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           + RE  K K K P YKLQSDIE ATDLKKVL
Sbjct: 7   KEREIGKEKAKAPAYKLQSDIEAATDLKKVL 37



 Score = 36.6 bits (83), Expect(2) = 3e-08
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAK 177
           +K  +ERIL+ K+EFT+GE+LGI K
Sbjct: 34  KKVLEERILSGKVEFTIGEILGITK 58


>tr|A9TMV1|A9TMV1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94810 PE=4 SV=1
          Length = 284

 Score = 41.6 bits (96), Expect(2) = 5e-08
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +3

Query: 39  KGKTKGPTYKLQSDIEVATDLKKVL 113
           KGK+K  TYKLQSDIE ATDLK++L
Sbjct: 7   KGKSKHVTYKLQSDIEAATDLKRIL 31



 Score = 38.5 bits (88), Expect(2) = 5e-08
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 115 QERILNSKIEFTLGEVLGIAKR 180
           +ER+LN+KIEFTL E+LGIAKR
Sbjct: 32  KERVLNAKIEFTLREILGIAKR 53


>tr|A9RID4|A9RID4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66531 PE=4 SV=1
          Length = 396

 Score = 42.7 bits (99), Expect(2) = 6e-08
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           + R+  K K K P YKLQSDIE ATDLKKVL
Sbjct: 196 KERKIGKEKAKAPAYKLQSDIEAATDLKKVL 226



 Score = 37.0 bits (84), Expect(2) = 6e-08
 Identities = 15/25 (60%), Positives = 23/25 (92%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAK 177
           +K  +ERIL++K+EFT+G++LGIAK
Sbjct: 223 KKVLEERILSAKVEFTIGKILGIAK 247


>tr|A9T5Y4|A9T5Y4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_88511 PE=4 SV=1
          Length = 177

 Score = 43.9 bits (102), Expect(2) = 7e-08
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +3

Query: 21  RRREPMKGKTKGPTYKLQSDIEVATDLKKVL 113
           + RE  K K K P YKLQSDIE ATDLKK+L
Sbjct: 7   KEREIGKEKAKAPAYKLQSDIEAATDLKKIL 37



 Score = 35.8 bits (81), Expect(2) = 7e-08
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 103 RKSWQERILNSKIEFTLGEVLGIAKR 180
           +K  +ERIL+ K+EFT+ E+LGI KR
Sbjct: 34  KKILEERILSGKVEFTIDEILGITKR 59


>tr|A9T9C2|A9T9C2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89784 PE=4 SV=1
          Length = 750

 Score = 40.4 bits (93), Expect(2) = 8e-08
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +3

Query: 39  KGKTKGPTYKLQSDIEVATDLKKVL 113
           KGK+K  TYKLQSDIE ATDLK VL
Sbjct: 473 KGKSKHVTYKLQSDIEAATDLKGVL 497



 Score = 38.9 bits (89), Expect(2) = 8e-08
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 115 QERILNSKIEFTLGEVLGIAKR 180
           +ER+LN+KIEFTL E+LGIAKR
Sbjct: 498 EERVLNAKIEFTLREILGIAKR 519