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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912018
Clone id YMU001_000012_B01
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000012_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCCCACACTGGCCAGAATCGCATCACCATAAATTGAGTATCCTAAGAGATCGCTTGCTC
TTCTATTCCATTGTAGTCCATCTTCCCCAGATAACTTAACTCCGACAAGTGCCTCCCCAA
AAGCGTCCGGATGAATACGCATGTCTGGAATGGCACAGTAAAGCCGAGTATCATGAGGAG
CCTTAGGGACAGTCCTTGACATCATAATGCCAGACCCCTCTCTAGTGCCAAGCTTTCTAG
CTAAGATATCCATATAGTAGTCTGGAGGTTCAATCTCAATTTCTATGCTCCTAACCATCA
AATCTTCGGAAGAAGGTATGTAAACAGCCTCAAATTTGGAATAGGCCTCTCTTTGAGACT
CTGAGGCAAGGAACTCCTCTTGAAATTGCGGCGAGAGTGCCACTTTTCTTTTAATCAGGT
AACCATCCTCACAGCAGACCAAAGGGCACCTTTTTGCAGCTTCCCTTATCATAGCCACTG
CAAATAAAGGATCACAGTCTGAAGATGCATGTAAGGACC
■■Homology search results ■■ -
sp_hit_id P06356
Definition sp|P06356|RR3_MARPO 30S ribosomal protein S3, chloroplastic OS=Marchantia polymorpha
Align length 112
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912018|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_B01.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06356|RR3_MARPO 30S ribosomal protein S3, chloroplastic OS=M...    32   1.8  
sp|Q09YH7|MET_SAIBB Hepatocyte growth factor receptor OS=Saimiri...    30   5.2  

>sp|P06356|RR3_MARPO 30S ribosomal protein S3, chloroplastic
           OS=Marchantia polymorpha GN=rps3 PE=3 SV=1
          Length = 217

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
 Frame = -3

Query: 499 DCDPLFAVAMIREAAKRCPLVCCEDGYLIKRK-----VALSPQFQEEFLASESQREAYSK 335
           DC  L+    I+ ++    +   E    IKRK     V +   F    + S  Q     K
Sbjct: 40  DCIELYVQKHIKNSSNYGGIARVE----IKRKTDLIQVEIYTGFPALLVESRGQGIEQLK 95

Query: 334 FEAVYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKA 179
                I SSED  +R   IEI  P     ILA+K+  +  S +   RT+ KA
Sbjct: 96  LNVQNILSSEDRRLRMTLIEIAKPYGEPKILAKKIALKLESRVAFRRTMKKA 147


>sp|Q09YH7|MET_SAIBB Hepatocyte growth factor receptor OS=Saimiri
           boliviensis boliviensis GN=MET PE=3 SV=1
          Length = 1381

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
 Frame = -3

Query: 436 CCEDGYLIKRKVALSPQFQEEFLASESQREAY-SKFEA------VYIPSSEDLMVRSIEI 278
           C +  Y    +   +  FQ  FL  E++R+ Y ++F        ++      +++ SI  
Sbjct: 385 CLQHFYGPNHEHCFNRTFQRNFLGCETRRDEYRTEFTTALQRIDLFAGQFNKVLLTSIST 444

Query: 277 EIEPPDYYMDILARKLGTREGS--GIMMSRTVPKAPH 173
            ++      D+    LGT EG    I++SR+VP  PH
Sbjct: 445 FVKG-----DLTIANLGTSEGRFIQIVVSRSVPSTPH 476
tr_hit_id A7Q4N6
Definition tr|A7Q4N6|A7Q4N6_VITVI Chromosome chr10 scaffold_50, whole genome shotgun sequence OS=Vitis vinifera
Align length 163
Score (bit) 79.7
E-value 8.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912018|Adiantum capillus-veneris mRNA, clone:
YMU001_000012_B01.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q4N6|A7Q4N6_VITVI Chromosome chr10 scaffold_50, whole genom...    80   8e-14
tr|A9TPU3|A9TPU3_PHYPA HEN1 protein OS=Physcomitrella patens sub...    79   1e-13
tr|Q9SUC2|Q9SUC2_ARATH Putative uncharacterized protein AT4g2091...    69   1e-10
tr|Q9C5Q8|Q9C5Q8_ARATH CORYMBOSA2 OS=Arabidopsis thaliana GN=CRM...    69   1e-10
tr|Q945R3|Q945R3_ARATH HEN1 OS=Arabidopsis thaliana PE=2 SV=1          69   1e-10
tr|Q69U43|Q69U43_ORYSJ Putative HEN1 (Putative uncharacterized p...    69   1e-10
tr|Q0D8F3|Q0D8F3_ORYSJ Os07g0164000 protein OS=Oryza sativa subs...    69   1e-10
tr|O65309|O65309_ARATH Putative uncharacterized protein OS=Arabi...    69   1e-10
tr|B8B7K2|B8B7K2_ORYSI Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|Q9SUC1|Q9SUC1_ARATH Putative uncharacterized protein AT4g2092...    66   1e-09
tr|B4MB30|B4MB30_DROVI GJ16033 OS=Drosophila virilis GN=GJ16033 ...    38   0.26 
tr|B8GVA7|B8GVA7_9GAMM Polysaccharide deacetylase OS=Thioalkaliv...    35   1.7  
tr|B5K700|B5K700_9RHOB Transcriptional regulator, MarR family OS...    33   6.5  
tr|A0MS27|A0MS27_9GAMM BryX OS=Candidatus Endobugula sertula PE=...    33   6.5  
tr|Q9VVQ7|Q9VVQ7_DROME CG18231 OS=Drosophila melanogaster GN=CG1...    33   8.5  
tr|Q4V5K8|Q4V5K8_DROME IP12044p (Fragment) OS=Drosophila melanog...    33   8.5  
tr|Q7ME58|Q7ME58_VIBVY Putative uncharacterized protein VVA0828 ...    33   8.5  
tr|A0EF21|A0EF21_PARTE Chromosome undetermined scaffold_92, whol...    33   8.5  

>tr|A7Q4N6|A7Q4N6_VITVI Chromosome chr10 scaffold_50, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029765001
           PE=4 SV=1
          Length = 964

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 53/163 (32%), Positives = 86/163 (52%)
 Frame = -3

Query: 490 PLFAVAMIREAAKRCPLVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSKFEAVYIPS 311
           P      + +AA        E    ++R+    P+  +  ++S+         EAVYIP 
Sbjct: 164 PCLLFFFVLKAAASGSFATSEGQLWMRRQNPYPPEIIQSSISSQLSSPESIWIEAVYIPY 223

Query: 310 SEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAPHDTRLYCAIPDMRIH 131
           S +  V S+ + +    YY+D +ARKL   + S I++SRTV KA  + RLY + P+  + 
Sbjct: 224 SLEKNVESLTLNVSSTGYYLDAIARKLSLADTSKILVSRTVGKASSEMRLYFSAPEWYL- 282

Query: 130 PDAFGEALVGVKLSGEDGLQWNRRASDLLGYSIYGDAILASVG 2
            D   +  V  +++ E+G  +N RAS   G++IYG+AILAS+G
Sbjct: 283 VDLLSDLNV-EEVNSEEG-SFNARASYFSGHAIYGNAILASIG 323


>tr|A9TPU3|A9TPU3_PHYPA HEN1 protein OS=Physcomitrella patens subsp.
           patens GN=HEN1501 PE=4 SV=1
          Length = 951

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
 Frame = -3

Query: 493 DPLFAVAMIREAAKRCP-LVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSKFEAVYI 317
           +P +A A++  AA  CP L   +DG  I R    SP+   + L     R     FEAVYI
Sbjct: 160 NPAYAAALVCRAAAACPSLRLSDDGLWIGRSDPFSPELVTKLLTDRENRVESVAFEAVYI 219

Query: 316 PSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAPHDTRLYCAIPDMR 137
           P+     +R+I +   P  YY+D +A  LG ++   + MSR + K P D  L       +
Sbjct: 220 PAYVKEELRTISLTALPDVYYLDTIANALGLQDTGQVFMSRCL-KFP-DVELLEQFEPSK 277

Query: 136 IHPDAFGEALVGVKLSGEDG-LQWNRRASDLLGYSIYGDAILASVG 2
           I+ D   +      L    G +  N RAS L+G++I GDAILA+VG
Sbjct: 278 IYRDICSQDGPMEALRNTGGRISRNERASFLVGHAIDGDAILATVG 323


>tr|Q9SUC2|Q9SUC2_ARATH Putative uncharacterized protein AT4g20910
           OS=Arabidopsis thaliana GN=T13K14.70 PE=2 SV=1
          Length = 957

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
 Frame = -3

Query: 514 LHASSDCDPLFAVAMIREAAKRCPLVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSK 335
           ++ S + DP  A++ + +AA +         + ++RK A   +  E      S      +
Sbjct: 174 INPSVESDPFLAISYVMKAAAKLADYIVASPHGLRRKNAYPSEIVEALATHVSDSLHSRE 233

Query: 334 FEAVYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAP--HDTRL 161
             AVYIP  ++ +V    + I    +Y+D +A +LG ++G+ +M+SR   KA    + RL
Sbjct: 234 VAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRL 293

Query: 160 YCAIPDMRI--HPDAFGEALVGVKLSGEDG----LQWNRRASDLLGYSIYGDAILASVG 2
           Y  IP   +    DA G        S ED        N RAS + G  I+GDAILASVG
Sbjct: 294 YSEIPKKYLDNSSDASG-------TSNEDSSHIVKSRNARASYICGQDIHGDAILASVG 345


>tr|Q9C5Q8|Q9C5Q8_ARATH CORYMBOSA2 OS=Arabidopsis thaliana GN=CRM2
           PE=2 SV=1
          Length = 942

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
 Frame = -3

Query: 514 LHASSDCDPLFAVAMIREAAKRCPLVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSK 335
           ++ S + DP  A++ + +AA +         + ++RK A   +  E      S      +
Sbjct: 159 INPSVESDPFLAISYVMKAAAKLADYIVASPHGLRRKNAYPSEIVEALATHVSDSLHSRE 218

Query: 334 FEAVYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAP--HDTRL 161
             AVYIP  ++ +V    + I    +Y+D +A +LG ++G+ +M+SR   KA    + RL
Sbjct: 219 VAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRL 278

Query: 160 YCAIPDMRI--HPDAFGEALVGVKLSGEDG----LQWNRRASDLLGYSIYGDAILASVG 2
           Y  IP   +    DA G        S ED        N RAS + G  I+GDAILASVG
Sbjct: 279 YSEIPKKYLDNSSDASG-------TSNEDSSHIVKSRNARASYICGQDIHGDAILASVG 330


>tr|Q945R3|Q945R3_ARATH HEN1 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 942

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
 Frame = -3

Query: 514 LHASSDCDPLFAVAMIREAAKRCPLVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSK 335
           ++ S + DP  A++ + +AA +         + ++RK A   +  E      S      +
Sbjct: 159 INPSVESDPFLAISYVMKAAAKLADYIVASPHGLRRKNAYPSEIVEALATHVSDSLHSRE 218

Query: 334 FEAVYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAP--HDTRL 161
             AVYIP  ++ +V    + I    +Y+D +A +LG ++G+ +M+SR   KA    + RL
Sbjct: 219 VAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRL 278

Query: 160 YCAIPDMRI--HPDAFGEALVGVKLSGEDG----LQWNRRASDLLGYSIYGDAILASVG 2
           Y  IP   +    DA G        S ED        N RAS + G  I+GDAILASVG
Sbjct: 279 YSEIPKKYLDNSSDASG-------TSNEDSSHIVKSRNARASYICGQDIHGDAILASVG 330


>tr|Q69U43|Q69U43_ORYSJ Putative HEN1 (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica GN=P0428D12.120
           PE=4 SV=1
          Length = 929

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
 Frame = -3

Query: 502 SDCDPLFAVAMIREAAKRCPLVCCEDG-YLIKRKVALSPQFQEEFLASESQREAYSKFEA 326
           ++ DPL  +++I  AAK+ P V   D  + I  +   SP+  +  L   S      + + 
Sbjct: 164 AEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDG 223

Query: 325 VYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAPHDTRLYCAIP 146
           +++P   +   ++I + +   ++YM  +  KL   + S  ++SRTV KA  + RLY + P
Sbjct: 224 IFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAP 283

Query: 145 DMRIHPDAFGEALVGVKLSGEDGLQ---WNRRASDLLGYSIYGDAILASVG 2
           +++       E    V  S  DG      N+RAS + G +IYGDAILA+VG
Sbjct: 284 NVQF----VSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVG 330


>tr|Q0D8F3|Q0D8F3_ORYSJ Os07g0164000 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0164000 PE=2 SV=1
          Length = 926

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
 Frame = -3

Query: 502 SDCDPLFAVAMIREAAKRCPLVCCEDG-YLIKRKVALSPQFQEEFLASESQREAYSKFEA 326
           ++ DPL  +++I  AAK+ P V   D  + I  +   SP+  +  L   S      + + 
Sbjct: 178 AEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDG 237

Query: 325 VYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAPHDTRLYCAIP 146
           +++P   +   ++I + +   ++YM  +  KL   + S  ++SRTV KA  + RLY + P
Sbjct: 238 IFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAP 297

Query: 145 DMRIHPDAFGEALVGVKLSGEDGLQ---WNRRASDLLGYSIYGDAILASVG 2
           +++       E    V  S  DG      N+RAS + G +IYGDAILA+VG
Sbjct: 298 NVQF----VSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVG 344


>tr|O65309|O65309_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 942

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
 Frame = -3

Query: 514 LHASSDCDPLFAVAMIREAAKRCPLVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSK 335
           ++ S + DP  A++ + +AA +         + ++RK A   +  E      S      +
Sbjct: 159 INPSVESDPFLAISYVMKAAAKLADYIVASPHGLRRKNAYPSEIVEALATHVSDSLHSRE 218

Query: 334 FEAVYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAP--HDTRL 161
             AVYIP  ++ +V    + I    +Y+D +A +LG ++G+ +M+SR   KA    + RL
Sbjct: 219 VAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRL 278

Query: 160 YCAIPDMRI--HPDAFGEALVGVKLSGEDG----LQWNRRASDLLGYSIYGDAILASVG 2
           Y  IP   +    DA G        S ED        N RAS + G  I+GDAILASVG
Sbjct: 279 YSEIPKKYLDNSSDASG-------TSNEDSSHIVKSRNARASYICGQDIHGDAILASVG 330


>tr|B8B7K2|B8B7K2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25006 PE=4 SV=1
          Length = 938

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
 Frame = -3

Query: 502 SDCDPLFAVAMIREAAKRCPLVCCEDG-YLIKRKVALSPQFQEEFLASESQREAYSKFEA 326
           ++ DPL  +++I  AAK+ P V   D  + I  +   SP+  +  L   S      + + 
Sbjct: 164 AEFDPLLVLSLIYNAAKKSPGVSVSDSNFWIWSQKPYSPEAVDLALQHWSGITDPIEVDG 223

Query: 325 VYIPSSEDLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPKAPHDTRLYCAIP 146
           +++P   +   ++I + +   ++YM  +  KL   + S  ++SRTV KA  + RLY + P
Sbjct: 224 IFVPCMMEDEPKTIRLTLSHNEHYMGDIVSKLSASDSSHAVVSRTVGKASSEIRLYFSAP 283

Query: 145 DMRIHPDAFGEALVGVKLSGEDGLQ---WNRRASDLLGYSIYGDAILASVG 2
           +++       E    V  S  DG      N+RAS + G +IYGDAILA+VG
Sbjct: 284 NVQF----VSEISHNVVSSLGDGYMESLINKRASFISGQTIYGDAILANVG 330


>tr|Q9SUC1|Q9SUC1_ARATH Putative uncharacterized protein AT4g20920
           OS=Arabidopsis thaliana GN=AT4g20920 PE=2 SV=1
          Length = 870

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
 Frame = -3

Query: 505 SSDCDPLFAVAMIREAAKRCP--LVCCEDGYLIKRKVALSPQFQEEFLASESQREAYSKF 332
           S + DP+  ++ + +AA + P  +V       ++RK    P   +    +  +     K 
Sbjct: 153 SVESDPILLMSYVMKAAAKLPDYIVVSPHVDSLRRKKPYPPATIKALATTHVKS---IKA 209

Query: 331 EAVYIPSSE--DLMVRSIEIEIEPPDYYMDILARKLGTREGSGIMMSRTVPK--APHDTR 164
           EAV++  +   + +V+ + ++I    YY+DI+A KLG ++GS +M+SRT+ K  + ++ R
Sbjct: 210 EAVHLQCTVGGEEVVKPVTLDISSGRYYLDIIADKLGLKDGSQVMISRTIGKTSSGYECR 269

Query: 163 LYCAIPDMRIHPDAF-GEALVGVKLSGEDGLQWNRRASDLLGYSIYGDAILASVG 2
           +Y AIP ++   +++       +  S       N +AS + G  I+GDAI+ASVG
Sbjct: 270 VYAAIPKLKSSDNSWKAREKRPIIESSHLEKSRNAKASFVCGVDIHGDAIVASVG 324