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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912003
Clone id YMU001_000011_H07
Library
Length 455
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCTCATAGGGCTCAAATGCAAAAGCTTTTCCGTGTTTGGCAAGCATGTCTTCAAAGCA
TATCTTTTCAAATTTTGTCAAACTATCCTCGCAACCAACCTTTAACAAGATTTCTATTGA
GCATACTTTCATGACCTCACTTCCCATACGCAAATTGCAATCCACTAAAGACTCCAAATC
TTGCATAGTATCCACAAACGAACACTCATCAAACACACCTGCAATGCATTCATCATCTTC
TAGCAAACCATTCATCTTCAAACCTCTTTGTAAAGTATTTACATGTTGTCGTTCACCCCG
ACTTTAAGTCCTCACACTTTGTAAAAGCAATAGATCCATAGTTAGTTAATCCTACAAAAC
TTGTAGAAAATGTTTCCTTTGTGAGAACTTTTCTCTTCTTGGACCACTGCAATCCCACTC
TACAATGGTACATGATCAAAACCCCTCATATCCCT
■■Homology search results ■■ -
sp_hit_id O60296
Definition sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo sapiens
Align length 56
Score (bit) 31.2
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912003|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_H07.
         (455 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=H...    31   2.2  
sp|A6VU13|RF3_MARMS Peptide chain release factor 3 OS=Marinomona...    30   3.8  
sp|Q5BKM6|MIDA_XENTR Protein midA homolog, mitochondrial OS=Xeno...    30   6.4  
sp|A1KRJ9|RPOA_NEIMF DNA-directed RNA polymerase subunit alpha O...    29   8.4  
sp|P66704|RPOA_NEIMB DNA-directed RNA polymerase subunit alpha O...    29   8.4  
sp|P66703|RPOA_NEIMA DNA-directed RNA polymerase subunit alpha O...    29   8.4  
sp|A8MUX0|KR10D_HUMAN Putative keratin-associated protein 10-lik...    29   8.4  

>sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo
           sapiens GN=TRAK2 PE=1 SV=2
          Length = 914

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 287 CRSPRL*VLTLCKSNRSIVS*SYKTCRKCFLCENFSLLGPLQSHSTMVHDQNPSYP 454
           C +P   + +LC +   I   S  +C + F+ E   ++ PL+   T+ H Q  + P
Sbjct: 524 CVTPTESLASLCTTQSEITDLSSASCLRGFMPEKLQIVKPLEGSQTLYHWQQLAQP 579


>sp|A6VU13|RF3_MARMS Peptide chain release factor 3 OS=Marinomonas
           sp. (strain MWYL1) GN=prfC PE=3 SV=1
          Length = 528

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
 Frame = -2

Query: 433 MYHCRVG--------LQWSKKRKVLTKETFSTSFVGLTNYGSI----AFTKCEDLK 302
           M HCR+G        + ++   +   +E FS   +GL N+G+I     FT+ EDLK
Sbjct: 330 MRHCRIGKDIKVTDAVSFTAGDREGVEEAFSGDIIGLHNHGTIQIGDTFTEGEDLK 385


>sp|Q5BKM6|MIDA_XENTR Protein midA homolog, mitochondrial OS=Xenopus
           tropicalis GN=TEgg135j01.1 PE=2 SV=1
          Length = 430

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 95  PTFNKISIEHTFMTSLPIRKLQSTKD 172
           PT     I H F  +LPI KLQ TKD
Sbjct: 206 PTGFSFYIAHEFFDALPIHKLQKTKD 231


>sp|A1KRJ9|RPOA_NEIMF DNA-directed RNA polymerase subunit alpha
           OS=Neisseria meningitidis serogroup C / serotype 2a
           (strain ATCC 700532 / FAM18) GN=rpoA PE=3 SV=1
          Length = 328

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 279 NTLQRGL--KMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKV---CSI 115
           N L+R L   MNG    +  IAGV  E S VD +Q  E +VD  L +   V K+     +
Sbjct: 41  NALRRILLSSMNGFAPTEVAIAGVLHEYSTVDGIQ--EDVVDILLNIKGIVFKLHGRSQV 98

Query: 114 EILLK 100
           +++LK
Sbjct: 99  QLVLK 103


>sp|P66704|RPOA_NEIMB DNA-directed RNA polymerase subunit alpha
           OS=Neisseria meningitidis serogroup B GN=rpoA PE=3 SV=1
          Length = 328

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 279 NTLQRGL--KMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKV---CSI 115
           N L+R L   MNG    +  IAGV  E S VD +Q  E +VD  L +   V K+     +
Sbjct: 41  NALRRILLSSMNGFAPTEVAIAGVLHEYSTVDGIQ--EDVVDILLNIKGIVFKLHGRSQV 98

Query: 114 EILLK 100
           +++LK
Sbjct: 99  QLVLK 103


>sp|P66703|RPOA_NEIMA DNA-directed RNA polymerase subunit alpha
           OS=Neisseria meningitidis serogroup A GN=rpoA PE=3 SV=1
          Length = 328

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 279 NTLQRGL--KMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKV---CSI 115
           N L+R L   MNG    +  IAGV  E S VD +Q  E +VD  L +   V K+     +
Sbjct: 41  NALRRILLSSMNGFAPTEVAIAGVLHEYSTVDGIQ--EDVVDILLNIKGIVFKLHGRSQV 98

Query: 114 EILLK 100
           +++LK
Sbjct: 99  QLVLK 103


>sp|A8MUX0|KR10D_HUMAN Putative keratin-associated protein 10-like
           ENSP00000375147 OS=Homo sapiens PE=3 SV=1
          Length = 517

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 182 CIVSTNEHSSNTPAMHXXXXXKPFIFKPLCKVFTCCRSPRL*VLTLCKSNRSIVS*SYKT 361
           C  +T E S +    +     +  I +P C V  CC+ P     T+C+ + S+ S +   
Sbjct: 94  CEATTCEPSCSVSNCYQPVCFEATICEPSCSVSNCCQ-PVCFEATVCEPSCSVSSCAQPV 152

Query: 362 CRKCFLCE 385
           C +  +CE
Sbjct: 153 CCEPAICE 160
tr_hit_id A9RQL4
Definition tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 54.7
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912003|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_H07.
         (455 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A9RBV2|A9RBV2_PHYPA Predicted protein OS=Physcomitrella paten...    43   1e-05
tr|A9TP58|A9TP58_PHYPA Predicted protein OS=Physcomitrella paten...    51   3e-05
tr|A9RC40|A9RC40_PHYPA Predicted protein OS=Physcomitrella paten...    51   3e-05
tr|A9RWD8|A9RWD8_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9S1W8|A9S1W8_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|A9TKA1|A9TKA1_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A9SGJ9|A9SGJ9_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|A9SU38|A9SU38_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9U5F5|A9U5F5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9U5F2|A9U5F2_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.002
tr|A9RYY0|A9RYY0_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9U5W7|A9U5W7_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A9S6S2|A9S6S2_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A9TH71|A9TH71_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9S3K6|A9S3K6_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9RN76|A9RN76_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9SAA2|A9SAA2_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|A9U3I8|A9U3I8_PHYPA Predicted protein (Fragment) OS=Physcomit...    43   0.009
tr|A9U2F8|A9U2F8_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9U1C9|A9U1C9_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9RWD5|A9RWD5_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9RID3|A9RID3_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9TMF8|A9TMF8_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9SXQ4|A9SXQ4_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9SA71|A9SA71_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9S9Z2|A9S9Z2_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9S3F8|A9S3F8_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9RZC9|A9RZC9_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9RZ97|A9RZ97_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012

>tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69317 PE=4 SV=1
          Length = 503

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = -3

Query: 294 ERQHVNTLQRGLKMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKVCSI 115
           +R ++  +++ LK NG L ++E I+G ++E  F DTM +L  L+ C L++ + V+ VCS 
Sbjct: 314 DRCYIKNIEKNLKENGELVENEFISGTYEEIGFTDTMGELNYLLQCELQVENRVINVCSK 373

Query: 114 EILLKV-GCEDSLTKFE 67
           E   ++ G +++L++ E
Sbjct: 374 EFYDEIQGFKENLSRQE 390



 Score = 42.0 bits (97), Expect = 0.015
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = -3

Query: 105 LKVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           L VG +  LTK E+  F DML++HGKAFAFE +E
Sbjct: 446 LNVGGDGFLTKCEEKYFRDMLSRHGKAFAFEAHE 479


>tr|A9RBV2|A9RBV2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64034 PE=4 SV=1
          Length = 589

 Score = 43.1 bits (100), Expect(2) = 1e-05
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 49/149 (32%)
 Frame = -3

Query: 303 SRGERQHVNTLQRGLKMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGS----- 139
           +R ER+ +  ++  L+  G L+DDE I GV++E    D+++ + S+ +    + S     
Sbjct: 348 TRKERKRLYDIEGQLRKIGTLQDDERILGVYEENGLEDSLELITSIGEVYTMLESFQAPE 407

Query: 138 --------------------------EVMKVCSIEILL------------------KVGC 91
                                     E M+  S E  L                  K+G 
Sbjct: 408 VTVETRYKTADKKVKPVAGPLPEDSKEQMEEASKEASLRDPMSIGHQFTEETFEELKIGS 467

Query: 90  EDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           + SL   E  CF+ MLAK G++FAFE +E
Sbjct: 468 DGSLLPEEITCFKKMLAKQGRSFAFESHE 496



 Score = 28.9 bits (63), Expect(2) = 1e-05
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 397 KRKVLTKE--TFSTSFVGLTNYGSIAFTKCEDL 305
           K +VL+++  TF  SF+G+   G+I + K +DL
Sbjct: 315 KEEVLSRDEGTFDASFIGILENGNIMYKKVDDL 347


>tr|A9TP58|A9TP58_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95312 PE=4 SV=1
          Length = 291

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 21/120 (17%)
 Frame = -3

Query: 300 RGERQHVNTLQRGLKMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKVC 121
           R +++ +  ++  L+  G L+DDE I G+++E    D+   LE +    L    +++++ 
Sbjct: 116 RKQKKRLYNIEGELRKLGTLQDDERILGIYEENGLKDS---LELITSIGLVNNDKIVEIH 172

Query: 120 SIEILL---------------------KVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           S E+                       K+G + SL   E  CF+ +LAK G++FAFE YE
Sbjct: 173 SREVYTILESFQAREVTVEMRYKTIDKKIGSDGSLLPEEITCFKKLLAKQGRSFAFESYE 232


>tr|A9RC40|A9RC40_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_64391 PE=4 SV=1
          Length = 987

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
 Frame = -3

Query: 300  RGERQHVNTLQRGLKMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKVC 121
            R ER+ +  ++  L   G L+DDE I GV++E    D+++ + S+    L    +++++ 
Sbjct: 759  RKERKRLYDIEGQLHKLGTLQDDERILGVYEENGLEDSLKLITSI---GLGDNDKIVEIH 815

Query: 120  SIEILL---------------------KVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
            S E+                       K+G + SL   E  CF+ MLAK G++FAFE +E
Sbjct: 816  SREVYTILESFQAPEVTVETRYKTADKKIGSDGSLLPKEITCFKKMLAKQGRSFAFESHE 875


>tr|A9RWD8|A9RWD8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71417 PE=4 SV=1
          Length = 417

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 40/139 (28%)
 Frame = -3

Query: 300 RGERQHVNTLQRGLKMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKVC 121
           R ER+ +  ++  L+  G L+DDE I GV++E    D+   LE +    L    +++++ 
Sbjct: 261 RKERKRLYDIEGQLRKLGTLQDDERILGVYEENGLEDS---LELITSIGLGDNDKIVEIH 317

Query: 120 SIEILL----------------------------------------KVGCEDSLTKFEKI 61
           S E+ L                                        K+G + SL   E  
Sbjct: 318 SREVKLVARPLPEDSKKQIGEASKEASLRDPMSIGHQFTKETFEELKIGSDGSLLPEEIT 377

Query: 60  CFEDMLAKHGKAFAFEPYE 4
           CF+ MLAKHG++FAFE +E
Sbjct: 378 CFKKMLAKHGRSFAFESHE 396


>tr|A9S1W8|A9S1W8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_73484 PE=4 SV=1
          Length = 436

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
 Frame = -3

Query: 249 GLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKVCSIEILL----------- 103
           G L+DDE I GV++E    D+   LE +    L    +++++ S E+             
Sbjct: 316 GTLQDDERILGVYEENGLEDS---LELITSIGLGDNDKIVEIHSREVYTILESFQGPEVT 372

Query: 102 ----------KVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
                     K+G + SL   E  CF+ MLAK G++FAFE YE
Sbjct: 373 IETRYKTADKKIGFDGSLLSEEITCFKKMLAKQGRSFAFESYE 415


>tr|A9TKA1|A9TKA1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93866 PE=4 SV=1
          Length = 247

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -3

Query: 105 LKVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           L VG +  LTK E+ CF DML++HGKAFAFE +E
Sbjct: 180 LNVGSDGFLTKCEEKCFRDMLSRHGKAFAFEAHE 213


>tr|A9SGJ9|A9SGJ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_79130 PE=4 SV=1
          Length = 721

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
 Frame = -3

Query: 300 RGERQHVNTLQRGLKMNGLLEDDECIAGVFDECSFVDTMQDLESLVDCNLRMGSEVMKVC 121
           R ER+ +  ++  L+    L+DDE I GV++E    D+   LE +    L    +++K+ 
Sbjct: 571 RKERKRLYDIEGQLRKISTLQDDERILGVYEENGLEDS---LELITFIELGDNDKIVKIH 627

Query: 120 SIEIL------------LKVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           S E+             ++   + +  K E  CF+ MLAK G++FAFE +E
Sbjct: 628 SREVYTMLESFQAPEVTVETRYKTADKKEEITCFKKMLAKQGRSFAFESHE 678


>tr|A9SU38|A9SU38_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_83879 PE=4 SV=1
          Length = 232

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = -3

Query: 105 LKVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           LK+GC+ SL   E  CF+ MLAK G++FAFE YE
Sbjct: 178 LKIGCDGSLLPEEITCFKKMLAKQGRSFAFESYE 211


>tr|A9U5F5|A9U5F5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_102629 PE=4 SV=1
          Length = 776

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = -3

Query: 153 LRMGSEVMKVCSIEILLKVGCEDSLTKFEKICFEDMLAKHGKAFAFEPYE 4
           +R+G +  K    E  LK+GC+ SL   E  CF+ MLAK G++FAF+ YE
Sbjct: 686 MRIGHQFTKETFEE--LKIGCDGSLLSEEITCFKKMLAKQGRSFAFKSYE 733