BP911988 |
Clone id |
YMU001_000011_F12 |
Library |
YMU01 |
Length |
484 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000011_F12. |
Accession |
BP911988 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CCAGGCAGTTACAGGAACCGCCATCCGAGAAGAGGTTGCGTGCATGGTTTTTGAATGGTT TTAGAAGCAAAAAGCTTATGGAGCAGGAGGTACCAACTCCAACCAAGAAATTCAATGATC TGGTATAACGGGCACTGAAGCTGGAACAACAGGCCAAGAAGGAAAAGAGCCATAAAAAGA GAAGATCCAGTAGCAGTAGCTTTGCTACTGAGAGTTCTGATTCCAGTGAAGTGTACAGCA GCTCTGAAACAGCTCTAATGAACGGTCCAAGGATAAGTCAAAGAAGGGATCCTGGACTAA GAAGATTGAAGAAATGGCTAGACAGATTGCCGAGATTAGCCACACCAGACAACCAGTTCG GAAGATGGAAACTTGGTGTTCGAAATGCAGATCCAAGGACCATATCTCCAACGAGTGCCC ACAATGTACTTACTGTAAGGCCTTTGGTCATTTATGGAACAATTGTGGTATTAGGATTCA TCAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8N3Z6 |
Definition |
sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens |
Align length |
60 |
Score (bit) |
31.6 |
E-value |
2.0 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911988|Adiantum capillus-veneris mRNA, clone: YMU001_000011_F12. (484 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein... 32 2.0 sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN... 32 2.0 sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein... 30 5.7 sp|Q979B7|SYM_THEVO Methionyl-tRNA synthetase OS=Thermoplasma vo... 30 5.7 sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein... 30 7.5 sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharom... 29 9.8 sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS... 29 9.8 sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b... 29 9.8 sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B... 29 9.8 sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28... 29 9.8 sp|Q45KJ5|LN28A_CHICK Lin-28 homolog A OS=Gallus gallus GN=LIN28... 29 9.8 sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorh... 29 9.8 sp|Q9P795|AIR1_SCHPO Protein air1 OS=Schizosaccharomyces pombe G... 29 9.8
>sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens GN=ZCCHC7 PE=1 SV=1 Length = 542
Score = 31.6 bits (70), Expect = 2.0 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 14/60 (23%) Frame = +2
Query: 329 AEISHTRQPVRKMETW--------CSKCRSKDHISNECP------QCTYCKAFGHLWNNC 466 A+I++ R P R + + C C + H+S CP +C C GHL +C Sbjct: 218 AQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSC 277
>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN=AIR2 PE=1 SV=1 Length = 344
Score = 31.6 bits (70), Expect = 2.0 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%) Frame = +2
Query: 377 CSKCRSKDHISNECP------QCTYCKAFGHLWNNC 466 CSKC H ++CP QCT CK+ H C Sbjct: 101 CSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERC 136
Score = 29.6 bits (65), Expect = 7.5 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Frame = +2
Query: 377 CSKC-RSKDHISNECP---QCTYCKAFGHLWNNC 466 CS C + DH S CP QC+ C GH + C Sbjct: 81 CSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQC 114
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=2 SV=1 Length = 166
Score = 30.0 bits (66), Expect = 5.7 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Frame = +2
Query: 359 RKMETWCSKCRSKDHISNECPQ--CTYCKAFGHLWNNC 466 R+ E C C HI +C Q C C GH+ NC Sbjct: 106 RQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINC 143
>sp|Q979B7|SYM_THEVO Methionyl-tRNA synthetase OS=Thermoplasma volcanium GN=metG PE=3 SV=1 Length = 543
Score = 30.0 bits (66), Expect = 5.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2
Query: 401 HISNECPQCTYCKAFGHLWNNCG 469 +I ECP C Y KA G +NCG Sbjct: 140 YIEGECPYCGYKKARGDQCDNCG 162
>sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens GN=ZCCHC3 PE=1 SV=1 Length = 404
Score = 29.6 bits (65), Expect = 7.5 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = +2
Query: 377 CSKCRSKDHISNECPQ--CTYCKAFGHLWNNC 466 C KC S+ H+S C Q C C GHL C Sbjct: 336 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYC 367
>sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharomyces pombe GN=tip1 PE=1 SV=1 Length = 461
Score = 29.3 bits (64), Expect = 9.8 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +2
Query: 368 ETWCSKCRSKDHISNECP 421 ETWC C + +H ECP Sbjct: 435 ETWCEVCETNNHSLQECP 452
>sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS=Reclinomonas americana GN=RPL32 PE=3 SV=1 Length = 62
Score = 29.3 bits (64), Expect = 9.8 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = +2
Query: 359 RKMETWCSKCRSKDHISNE--CPQCTYCKAFGHLWNNCG 469 RK+ + K ++SN C C Y K H+ NNCG Sbjct: 13 RKIRNVFIRAEMKKNLSNYSICKHCNYVKKKHHICNNCG 51
>sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b PE=2 SV=2 Length = 247
Score = 29.3 bits (64), Expect = 9.8 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Frame = +2
Query: 377 CSKCRSKDHISNEC---PQ---CTYCKAFGHLWNNC 466 C C DH + EC PQ C YC++ H+ NC Sbjct: 127 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 162
>sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B PE=1 SV=1 Length = 250
Score = 29.3 bits (64), Expect = 9.8 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Frame = +2
Query: 377 CSKCRSKDHISNEC---PQ---CTYCKAFGHLWNNC 466 C C DH + EC PQ C YC++ H+ NC Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
>sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28B PE=2 SV=1 Length = 250
Score = 29.3 bits (64), Expect = 9.8 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Frame = +2
Query: 377 CSKCRSKDHISNEC---PQ---CTYCKAFGHLWNNC 466 C C DH + EC PQ C YC++ H+ NC Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TRA3 |
Definition |
tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
63 |
Score (bit) |
42.4 |
E-value |
0.012 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911988|Adiantum capillus-veneris mRNA, clone: YMU001_000011_F12. (484 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012 tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012 tr|A9RDG2|A9RDG2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.015 tr|A9RDC8|A9RDC8_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.020 tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.026 tr|A9U3X0|A9U3X0_PHYPA Predicted protein (Fragment) OS=Physcomit... 40 0.044 tr|A9U2G0|A9U2G0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9U2C9|A9U2C9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9TKN0|A9TKN0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9TAU0|A9TAU0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9T6T9|A9T6T9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9T6A0|A9T6A0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9T304|A9T304_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9T1G3|A9T1G3_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9SYL0|A9SYL0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9SJ26|A9SJ26_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9S643|A9S643_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A9RTK2|A9RTK2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.044 tr|A5C6R1|A5C6R1_VITVI Putative uncharacterized protein OS=Vitis... 40 0.044 tr|A9S154|A9S154_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.057 tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9TBQ7|A9TBQ7_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9T2D2|A9T2D2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9SKN2|A9SKN2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9S4F9|A9S4F9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9S2D0|A9S2D0_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9RSD8|A9RSD8_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.075 tr|A9TU30|A9TU30_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.097 tr|A9S9W6|A9S9W6_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.097
>tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_96115 PE=4 SV=1 Length = 219
Score = 42.4 bits (98), Expect = 0.012 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ T WCS C+ H ECP QCT+C+ HL Sbjct: 152 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCKGHGHSVTECPSPSQIMGQCTFCRG-KHLT 210
Query: 458 NNC 466 NC Sbjct: 211 ANC 213
>tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_68907 PE=4 SV=1 Length = 192
Score = 42.4 bits (98), Expect = 0.012 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMETWCSKCRSKDHISNECP-------QCTYCKAFGHLWNN 463 +EEM +A+ + K WCS C+ H+ ECP QCT+C HL N Sbjct: 122 MEEMVVNMAKDKRHKPTNTKTNVWCSNCKDHGHLVTECPSPSQMIGQCTFCGG-KHLTTN 180
Query: 464 C 466 C Sbjct: 181 C 181
>tr|A9RDG2|A9RDG2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64623 PE=4 SV=1 Length = 225
Score = 42.0 bits (97), Expect = 0.015 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVR--KMETWCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ ++ WCS C+ D++ ECP QCT+C HL Sbjct: 145 MEEMAVNMAKDKEKRQKPTNTRINVWCSNCKGHDYLVIECPSPSQMMGQCTFCGG-KHLT 203
Query: 458 NNC 466 NC Sbjct: 204 TNC 206
>tr|A9RDC8|A9RDC8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64580 PE=4 SV=1 Length = 221
Score = 41.6 bits (96), Expect = 0.020 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA IA+ RQ T W S C+ H+ ECP QCT+C+ HL Sbjct: 75 MEEMAINIAKDKEKRQKPTNTRTNVWYSNCKGHGHLVTECPSSSQMKDQCTFCRG-NHLT 133
Query: 458 NNC 466 NC Sbjct: 134 ANC 136
>tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79949 PE=4 SV=1 Length = 229
Score = 41.2 bits (95), Expect = 0.026 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 ++EMA +A+ RQ T WCS C DH+ ECP +CT+C HL Sbjct: 126 MKEMAINMAKDKEKRQKPTNTRTNVWCSNCEGHDHLVTECPSPSQVLGKCTFCGG-KHLT 184
Query: 458 NNC 466 NC Sbjct: 185 ANC 187
>tr|A9U3X0|A9U3X0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_101564 PE=4 SV=1 Length = 288
Score = 40.4 bits (93), Expect = 0.044 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ T WCS C+ H+ ECP +CT+C HL Sbjct: 145 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 203
Query: 458 NNC 466 NC Sbjct: 204 ANC 206
>tr|A9U2G0|A9U2G0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_100791 PE=4 SV=1 Length = 281
Score = 40.4 bits (93), Expect = 0.044 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ T WCS C+ H+ ECP +CT+C HL Sbjct: 126 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 184
Query: 458 NNC 466 NC Sbjct: 185 ANC 187
>tr|A9U2C9|A9U2C9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_100678 PE=4 SV=1 Length = 156
Score = 40.4 bits (93), Expect = 0.044 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ T WCS C+ H+ ECP +CT+C HL Sbjct: 1 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 59
Query: 458 NNC 466 NC Sbjct: 60 ANC 62
>tr|A9TKN0|A9TKN0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_94000 PE=4 SV=1 Length = 281
Score = 40.4 bits (93), Expect = 0.044 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ T WCS C+ H+ ECP +CT+C HL Sbjct: 126 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 184
Query: 458 NNC 466 NC Sbjct: 185 ANC 187
>tr|A9TAU0|A9TAU0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_90323 PE=4 SV=1 Length = 821
Score = 40.4 bits (93), Expect = 0.044 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%) Frame = +2
Query: 305 IEEMARQIAEISHTRQPVRKMET--WCSKCRSKDHISNECP-------QCTYCKAFGHLW 457 +EEMA +A+ RQ T WCS C+ H+ ECP +CT+C HL Sbjct: 345 MEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLT 403
Query: 458 NNC 466 NC Sbjct: 404 ANC 406
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