BP911984
Clone id YMU001_000011_F07
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000011_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GAGCAAAACATCTGCTCTTGTTACTGAAGATACTCAATGACACACTCCTCGGTGGCGGGC
ACCAGAACCATGATAGAAGAAAGTCGCAACAAAACACCTCTATAGCAATGCCTCTCTGCC
AGTTTGAACTTTCAACAAATGCAAGAAAAACACTTGCAATCTCAACTCGTAAGACTGTCT
CAAAATCGTCGACTCAAGCTCTTGGCCATGGGGGTTTACAAGCTCATGCCGACAAGGAAA
TAAATCAATCGCATGGCATGAAACTGCAACACTCGCCAACCATACTTAACAAAGGATGTA
CCACATACATCTGCATATATCATTCATAAACACCAAGCTGATGTACTCTTTTCCATCTTG
ATAAGAGATCAGCTCTCAAGTGGCTTGCATTCGTCCACAGTATGCATACATCATACTTGC
CTCAGCTCTAGGCTGCATATTACCAACCCAACCTCATCCCCAGTTAGCAGCGCTCGACAT
TTCTTTAAAGCGGAGGTCTCGACCCTCCTCACAGTTGGCAGTCCTTGAAGCTCTTGTAGG
GGTCGCCATCTATAAATGGCAGGTCT
■■Homology search results ■■ -
sp_hit_id Q2J5Z1
Definition sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3)
Align length 76
Score (bit) 31.6
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911984|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_F07.
(566 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (stra... 32 2.9
sp|Q9PH47|ILVD_XYLFA Dihydroxy-acid dehydratase OS=Xylella fasti... 32 2.9
sp|A1TMA7|ILVD_ACIAC Dihydroxy-acid dehydratase OS=Acidovorax av... 32 2.9
sp|Q46YI9|ILVD2_RALEJ Dihydroxy-acid dehydratase 2 OS=Ralstonia ... 32 2.9
sp|Q80WE4|MPPH1_MOUSE M-phase phosphoprotein 1 OS=Mus musculus G... 27 3.2
sp|Q28235|PRLR_CEREL Prolactin receptor OS=Cervus elaphus GN=PRL... 30 8.3
sp|Q4K498|ILVD_PSEF5 Dihydroxy-acid dehydratase OS=Pseudomonas f... 30 8.3

>sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain
CcI3) GN=pth PE=3 SV=1
Length = 197

Score = 31.6 bits (70), Expect = 2.9
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +1

Query: 316 YIIHKHQADVLFSILIRDQLSSGL--HSSTVCIHHTCLSSR-------LHITNPTSSPVS 468
Y ++H A + L+ ++ S L H S + T L+ L N + PV+
Sbjct: 23 YAGNRHNAGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLARPLSFMNLSGGPVA 82

Query: 469 SARHFFKAEVSTLLTV 516
+AR F+K EVS L+ V
Sbjct: 83 AARSFYKVEVSRLIVV 98


>sp|Q9PH47|ILVD_XYLFA Dihydroxy-acid dehydratase OS=Xylella
fastidiosa GN=ilvD PE=3 SV=1
Length = 610

Score = 31.6 bits (70), Expect = 2.9
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +1

Query: 178 SQNRRLKLLAMGVYKLMP-TRK*INRMA*NCNTRQPYLTKDVPHTSAYIIHK-HQADVLF 351
S N L LLA +P T + I+R++ N P L K P+T Y I H+A +F
Sbjct: 276 STNTILHLLAAAQEAEVPFTMQDIDRLSRNV----PQLCKVAPNTQKYHIEDVHRAGGIF 331

Query: 352 SILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTSSPVSSARHFFKA 492
IL + LH+ +H L + + + + F+KA
Sbjct: 332 GILAELARGNLLHTDVATVHSKTLGEAIATWDIIGTQDEAVHTFYKA 378


>sp|A1TMA7|ILVD_ACIAC Dihydroxy-acid dehydratase OS=Acidovorax
avenae subsp. citrulli (strain AAC00-1) GN=ilvD PE=3
SV=1
Length = 619

Score = 31.6 bits (70), Expect = 2.9
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
P L K P+T+ Y I H+A + +IL + LH+ +H L L + T
Sbjct: 314 PQLCKVAPNTNKYHIEDVHRAGGIMAILGELDRAGRLHTDAPTVHAPTLGDALAQWDITR 373

Query: 457 SPVSSARHFFKA 492
+ + RHF+ A
Sbjct: 374 TQDEAVRHFYMA 385


>sp|Q46YI9|ILVD2_RALEJ Dihydroxy-acid dehydratase 2 OS=Ralstonia
eutropha (strain JMP134) GN=ilvD2 PE=3 SV=1
Length = 619

Score = 31.6 bits (70), Expect = 2.9
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
P L K P+T+ Y I H+A + +IL + + LH+ +H L L+ +
Sbjct: 314 PQLCKVAPNTNKYHIEDVHRAGGIMAILGELERAGKLHTDVPTVHAPSLGDALNQWDIVR 373

Query: 457 SPVSSARHFFKA 492
+ + RHF+ A
Sbjct: 374 TKDEAVRHFYMA 385


>sp|Q80WE4|MPPH1_MOUSE M-phase phosphoprotein 1 OS=Mus musculus
GN=Mphosph1 PE=1 SV=2
Length = 1774

Score = 26.6 bits (57), Expect(2) = 3.2
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3

Query: 72 DRRKSQQNTSIAMPLCQFELSTNARK---TLAISTRKTVSKSSTQALGHGGLQAHADKEI 242
+++ S +++ P+ + S ++ ++ S++KT S S + + + +
Sbjct: 1624 NKKNSTPRSNVKFPVSEHRNSPVKKEQKVSVGPSSKKTYSLRSQASTVSANIASKKREGT 1683

Query: 243 NQSHGMKLQHSPTILN 290
Q G LQHSPTIL+
Sbjct: 1684 LQKFGDFLQHSPTILS 1699



Score = 23.5 bits (49), Expect(2) = 3.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2

Query: 398 QYAYIILASALGCILPTQPHPQLAALDISLKRRSRP 505
Q++ IL+S I+ T P+L+ +++S + S+P
Sbjct: 1692 QHSPTILSSKAKKIIETMSSPKLSTVEVSKENVSQP 1727


>sp|Q28235|PRLR_CEREL Prolactin receptor OS=Cervus elaphus GN=PRLR
PE=2 SV=1
Length = 581

Score = 30.0 bits (66), Expect = 8.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2

Query: 368 ISSQVACIRPQYAYIILA-SALGCILPTQPHPQLAALDISLKRRSRPSSQLAVLEA 532
+ S V C+ +A + S + CILP P P++ DI L + + L LE+
Sbjct: 243 VLSAVICLIMVWAVALKGYSMMTCILPPVPGPKIKGFDIHLLEKGKSEELLRALES 298


>sp|Q4K498|ILVD_PSEF5 Dihydroxy-acid dehydratase OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ilvD PE=3
SV=1
Length = 613

Score = 30.0 bits (66), Expect = 8.3
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
P L K P+ Y + H+A +FSIL LH+ +H ++ + + T
Sbjct: 307 PQLCKVAPNIQKYHMEDVHRAGGIFSILGELARGGLLHTDLPTVHSKTMAEGIAQWDITQ 366

Query: 457 SPVSSARHFFKA 492
+ + HFFKA
Sbjct: 367 TSDEAVHHFFKA 378


tr_hit_id B5JW93
Definition tr|B5JW93|B5JW93_9GAMM Dihydroxy-acid dehydratase OS=gamma proteobacterium HTCC5015
Align length 72
Score (bit) 33.5
E-value 8.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911984|Adiantum capillus-veneris mRNA, clone:
YMU001_000011_F07.
(566 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B5JW93|B5JW93_9GAMM Dihydroxy-acid dehydratase OS=gamma prote... 33 8.3

>tr|B5JW93|B5JW93_9GAMM Dihydroxy-acid dehydratase OS=gamma
proteobacterium HTCC5015 GN=ilvD PE=4 SV=1
Length = 600

Score = 33.5 bits (75), Expect = 8.3
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1

Query: 280 PYLTKDVPHTSAYIIHK-HQADVLFSILIRDQLSSGLHSSTVCIHHTCLSSRLHITNPTS 456
P L K P++ Y I H+A + +IL + LHS +H + + + T
Sbjct: 293 PQLCKVAPNSQKYHIEDVHRAGGIMAILGELDKAGKLHSECPTVHSKTIGDAIKDWSITE 352

Query: 457 SPVSSARHFFKA 492
SP +A FFKA
Sbjct: 353 SPSDAAIEFFKA 364