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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911896
Clone id YMU001_000010_E09
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGGAGGAGCTGCATGGAAAGGATTGCATTGAGTGGTGGCAGAGACTTTGGAACGGGAAG
GAGAAATACCTCGAATCATGAGCAGATGTTGCCTTTTAGGACATTGGGACATAGAAATCT
GAGAGGAAGACTTTCAACATCCATGAAAGGCATGGCAATATAATAATGATGCTAGGTTGG
ATACTATAATAGACTTGAGCCACATGCTAAATTCATGACAAGATACATGCTAATCCTAGC
AACTAGTGACTGGTTAAAACAAACACCGATGATCAAGAATGACGATAAAAACCAAGGCAT
TTACTCGAGTTGTGTCCTTCTGATTGGAGTTATAGCACAAGGTGCTTGGAGAAGGGACCT
TGGAATGGGACTTAGATTGGTCGCTTGGCCTTCATGACAAACAATATTGCAAGAAGAGGT
TTTGGTGGTGGAGGTGCTCGAATAGGGTGAACCATCTCCATGAGTGGGAATGGGTTCAAC
ACCAGCATGGGATGAAGAAGTTGCAATAGAGTCCAAACTGAATCTAGTCTCATCAAACCA
AG
■■Homology search results ■■ -
sp_hit_id Q8YSM9
Definition sp|Q8YSM9|MUTL_ANASP DNA mismatch repair protein mutL OS=Anabaena sp. (strain PCC 7120)
Align length 64
Score (bit) 30.8
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911896|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_E09.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8YSM9|MUTL_ANASP DNA mismatch repair protein mutL OS=Anabaen...    31   4.5  
sp|Q00960|NMDE2_RAT Glutamate [NMDA] receptor subunit epsilon-2 ...    30   5.8  
sp|Q01097|NMDE2_MOUSE Glutamate [NMDA] receptor subunit epsilon-...    30   5.8  
sp|Q13224|NMDE2_HUMAN Glutamate [NMDA] receptor subunit epsilon-...    30   5.8  
sp|Q5R1P3|NMDE2_CANFA Glutamate [NMDA] receptor subunit epsilon-...    30   5.8  

>sp|Q8YSM9|MUTL_ANASP DNA mismatch repair protein mutL OS=Anabaena
           sp. (strain PCC 7120) GN=mutL PE=3 SV=1
          Length = 563

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 454 WFTLFEHLHHQNLFLQYCLS*RPSDQSKSHSKVPSPSTLCYNSNQKDTTRVNALVFIVIL 275
           WFT+        L  Q+    RPSD  +   ++P+P     ++N K     +AL  +V L
Sbjct: 196 WFTISPAATAGQLIPQFLPQLRPSDLQEIKLEIPNPENPQLSTNNK--PNASALALVVGL 253

Query: 274 DHRC 263
             RC
Sbjct: 254 PDRC 257


>sp|Q00960|NMDE2_RAT Glutamate [NMDA] receptor subunit epsilon-2
           OS=Rattus norvegicus GN=Grin2b PE=1 SV=1
          Length = 1482

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 385 SDQSKSHSKVPSPSTLCYNSNQKDTTRVNAL 293
           SD    HS +P P + CYN+++K   + N L
Sbjct: 305 SDMLSEHSFIPEPKSSCYNTHEKRIYQSNML 335


>sp|Q01097|NMDE2_MOUSE Glutamate [NMDA] receptor subunit epsilon-2
           OS=Mus musculus GN=Grin2b PE=1 SV=3
          Length = 1482

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 385 SDQSKSHSKVPSPSTLCYNSNQKDTTRVNAL 293
           SD    HS +P P + CYN+++K   + N L
Sbjct: 305 SDMLSEHSFIPEPKSSCYNTHEKRIYQSNML 335


>sp|Q13224|NMDE2_HUMAN Glutamate [NMDA] receptor subunit epsilon-2
           OS=Homo sapiens GN=GRIN2B PE=1 SV=3
          Length = 1484

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 385 SDQSKSHSKVPSPSTLCYNSNQKDTTRVNAL 293
           SD    HS +P P + CYN+++K   + N L
Sbjct: 305 SDMLSEHSFIPEPKSSCYNTHEKRIYQSNML 335


>sp|Q5R1P3|NMDE2_CANFA Glutamate [NMDA] receptor subunit epsilon-2
           OS=Canis familiaris GN=GRIN2B PE=2 SV=1
          Length = 1485

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 385 SDQSKSHSKVPSPSTLCYNSNQKDTTRVNAL 293
           SD    HS +P P + CYN+++K   + N L
Sbjct: 305 SDMLSEHSFIPEPKSSCYNTHEKRIYQSNML 335
tr_hit_id B8CEK9
Definition tr|B8CEK9|B8CEK9_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 44
Score (bit) 33.1
E-value 9.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911896|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_E09.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8CEK9|B8CEK9_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.7  

>tr|B8CEK9|B8CEK9_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_11455 PE=4 SV=1
          Length = 686

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +3

Query: 366 WD--LDWSLGLHDKQYCKKRF---WWWRCSNRVNHLHEWEWVQH 482
           WD  +DW L   D  Y   R    WWW  S R   L++  WV H
Sbjct: 473 WDVFMDWGLLERDVGYYGDRSGICWWWPYSLRTKRLYKRRWVYH 516