BP911894 |
Clone id |
YMU001_000010_E05 |
Library |
YMU01 |
Length |
533 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000010_E05. |
Accession |
BP911894 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATGCCATAGTGACCATAATGACTTACAAAGTCTGCATGCAACAACATAGGACCCTGAATG CCTAGCAGGATGTGAAGAGGAGTGCATTCAACACATTCATGCCTCCTAAACGGATTCAAA ACAGCATAAGCATTGTTGACAGCAAGCCCCCAACATGCACAATTACTTACATATGGACAG AAAAAAATGTCTCAAAAGTTTCAAATTGTGGGTGATCAGACATCATAAAGAAGTTGAATC TTGAGGGGTATCAGGCCTTTTCAAAGGCACTGCTTTATCATCCCTGCCTGCTGGTAAAGA AGCTCCATTTTGTGAGACGCTTTTCACTTCCTTTCGGTCCACACTTCGAGCTTCCTGGAG GGCCTTGACTCTTGCTTTCTTGGCCCTCTCCTGCACTTCATCCTGAAAATCGCGAACTTG CTTTTGCTGCTCTGCTTGCCACCGCCCGACATCACTCAATAACTCCCCCACAACTGTTCC CAGCCTTTCTGTTACTGCCTCTGCAAAGGCCTTGCCGAGAAAGAAGGCATCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8LDV3 |
Definition |
sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana |
Align length |
60 |
Score (bit) |
79.0 |
E-value |
1.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911894|Adiantum capillus-veneris mRNA, clone: YMU001_000010_E05. (533 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200, chlorop... 79 1e-14 sp|P73628|Y1769_SYNY3 Probable thylakoid lumen protein sll1769 O... 50 7e-06 sp|A5EJW1|TATB_BRASB Sec-independent protein translocase protein... 36 0.10 sp|P40626|HMGB_TETTH High mobility group protein B OS=Tetrahymen... 35 0.23 sp|A4YV72|TATB_BRASO Sec-independent protein translocase protein... 34 0.50 sp|P69377|DNAK_PORUM Chaperone protein dnaK OS=Porphyra umbilica... 33 1.1 sp|P69376|DNAK_PORPU Chaperone protein dnaK OS=Porphyra purpurea... 33 1.1 sp|Q54QQ2|Y5634_DICDI Uncharacterized protein DDB_G0283697 OS=Di... 32 2.5 sp|P44573|OPDA_HAEIN Oligopeptidase A OS=Haemophilus influenzae ... 32 2.5 sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergil... 32 2.5 sp|Q0AKL6|RS16_MARMM 30S ribosomal protein S16 OS=Maricaulis mar... 31 3.3 sp|Q7M8Z5|RL9_WOLSU 50S ribosomal protein L9 OS=Wolinella succin... 31 3.3 sp|A6R7X5|PAN1_AJECN Actin cytoskeleton-regulatory complex prote... 31 3.3 sp|P87248|ATG1_COLLN Serine/threonine-protein kinase ATG1 OS=Col... 31 3.3 sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Hom... 31 3.3 sp|Q2IQH0|UVRC_ANADE UvrABC system protein C OS=Anaeromyxobacter... 30 5.6 sp|A6RW62|NST1_BOTFB Stress response protein nst1 OS=Botryotinia... 30 5.6 sp|P95211|MMPL1_MYCTU Putative membrane protein mmpL1 OS=Mycobac... 30 5.6 sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pon... 30 5.6 sp|Q6AXV2|TEKT4_RAT Tektin-4 OS=Rattus norvegicus GN=Tekt4 PE=2 ... 30 7.3 sp|Q728S0|SYFB_DESVH Phenylalanyl-tRNA synthetase beta chain OS=... 30 7.3 sp|P54881|MMPL4_MYCLE Putative membrane protein mmpL4 OS=Mycobac... 30 7.3 sp|A9HEA3|DNAK_GLUDA Chaperone protein dnaK OS=Gluconacetobacter... 30 7.3 sp|Q06628|ATG13_YEAST Autophagy-related protein 13 OS=Saccharomy... 30 7.3 sp|A6ZX59|ATG13_YEAS7 Autophagy-related protein 13 OS=Saccharomy... 30 7.3 sp|Q2IWG4|TATB_RHOP2 Sec-independent protein translocase protein... 30 9.5 sp|Q89KZ8|TATB_BRAJA Sec-independent protein translocase protein... 30 9.5 sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabdi... 30 9.5 sp|O43491|E41L2_HUMAN Band 4.1-like protein 2 OS=Homo sapiens GN... 30 9.5
>sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=1 SV=2 Length = 185
Score = 79.0 bits (193), Expect = 1e-14 Identities = 37/60 (61%), Positives = 50/60 (83%) Frame = -3
Query: 531 DAFFLGKAFAEAVTERLGTVVGELLSDVGRWQAEQQKQVRDFQDEVQERAKKARVKALQE 352 DAFFLGKA AE + ER+ + VGE+LS +G++QAEQQKQV++ Q+EV ERAKKA+ +A +E Sbjct: 74 DAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAKERAARE 133
>sp|P73628|Y1769_SYNY3 Probable thylakoid lumen protein sll1769 OS=Synechocystis sp. (strain PCC 6803) GN=sll1769 PE=4 SV=1 Length = 105
Score = 50.1 bits (118), Expect = 7e-06 Identities = 24/49 (48%), Positives = 36/49 (73%) Frame = -3
Query: 528 AFFLGKAFAEAVTERLGTVVGELLSDVGRWQAEQQKQVRDFQDEVQERA 382 AFFLG+AFAE ++E++ V LS++G++ AEQ++ +R F EVQ RA Sbjct: 8 AFFLGRAFAEVLSEKVEDGVTNALSELGKFDAEQRENLRQFIAEVQSRA 56
>sp|A5EJW1|TATB_BRASB Sec-independent protein translocase protein tatB homolog OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tatB PE=3 SV=1 Length = 180
Score = 36.2 bits (82), Expect = 0.10 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -3
Query: 462 LLSDVGRWQAEQQKQVRDFQDEVQERAKKARVKALQEARSVDRKEVKSVSQNGASLPAGR 283 +L VG+W + ++ +FQ + QE ++A + L+++ ++ S +G R Sbjct: 28 VLRMVGQWMGKARRMASEFQGQFQEAMREAEMADLKKSFDEVKEAASGFSPSGMMSSLQR 87
Query: 282 D-DKAVPLKRPDTPQDS 235 D DKA+ ++ D P +S Sbjct: 88 DVDKALDIEGVDKPVES 104
>sp|P40626|HMGB_TETTH High mobility group protein B OS=Tetrahymena thermophila PE=1 SV=1 Length = 143
Score = 35.0 bits (79), Expect = 0.23 Identities = 15/52 (28%), Positives = 33/52 (63%) Frame = -3
Query: 411 DFQDEVQERAKKARVKALQEARSVDRKEVKSVSQNGASLPAGRDDKAVPLKR 256 D + ++++AKKA + +++++ +++ KS + A+ PA +DDK P K+ Sbjct: 91 DIEKSLKDQAKKALKEKTKKSKAAEKELEKSKKKAPAAAPAKKDDKKAPAKK 142
>sp|A4YV72|TATB_BRASO Sec-independent protein translocase protein tatB homolog OS=Bradyrhizobium sp. (strain ORS278) GN=tatB PE=3 SV=1 Length = 178
Score = 33.9 bits (76), Expect = 0.50 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -3
Query: 462 LLSDVGRWQAEQQKQVRDFQDEVQERAKKARVKALQEARSVDRKEVKSVSQNGASLPAGR 283 +L VG+W + ++ +FQ + QE ++A + L+++ ++ S G R Sbjct: 28 VLRMVGQWMGKARRMASEFQGQFQEAMREAEMADLKKSFDEVKEAASGFSPAGMMSSLQR 87
Query: 282 D-DKAVPLKRPDTPQD 238 D DKA+ ++ D P + Sbjct: 88 DVDKALDIEGVDKPAE 103
>sp|P69377|DNAK_PORUM Chaperone protein dnaK OS=Porphyra umbilicalis GN=dnaK PE=3 SV=1 Length = 620
Score = 32.7 bits (73), Expect = 1.1 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -3
Query: 432 EQQKQVRDFQDEVQERAKKARVKALQEARS-VDRKEVKSVSQNGASL 295 + +KQV++F+D++ E K + E RS ++++E+ S+ N L Sbjct: 538 QSEKQVKEFEDKIDEELKNRITNLISELRSNLEKEELDSIEANSEKL 584
>sp|P69376|DNAK_PORPU Chaperone protein dnaK OS=Porphyra purpurea GN=dnaK PE=3 SV=1 Length = 620
Score = 32.7 bits (73), Expect = 1.1 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -3
Query: 432 EQQKQVRDFQDEVQERAKKARVKALQEARS-VDRKEVKSVSQNGASL 295 + +KQV++F+D++ E K + E RS ++++E+ S+ N L Sbjct: 538 QSEKQVKEFEDKIDEELKNRITNLISELRSNLEKEELDSIEANSEKL 584
>sp|Q54QQ2|Y5634_DICDI Uncharacterized protein DDB_G0283697 OS=Dictyostelium discoideum GN=DDB_G0283697 PE=4 SV=1 Length = 853
Score = 31.6 bits (70), Expect = 2.5 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -3
Query: 453 DVGRWQAEQQKQVRDFQDEVQERAKKARVKALQEARSVDRKEVKSVSQNGASLPAGRDDK 274 DV + +QQ+Q DF +E +E K +E ++ E+K S+ S+ +GR DK Sbjct: 165 DVNVEKQKQQQQQSDFDEEEKEEEK-------EEEEEEEQIEIKKRSKKRNSIDSGRKDK 217
Query: 273 A 271 + Sbjct: 218 S 218
>sp|P44573|OPDA_HAEIN Oligopeptidase A OS=Haemophilus influenzae GN=prlC PE=3 SV=1 Length = 681
Score = 31.6 bits (70), Expect = 2.5 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3
Query: 435 AEQQKQVRDFQDEVQERAKKARVKALQEARSVDRKE 328 AE +QV DF D + ERAK K LQE + KE Sbjct: 289 AENPQQVLDFLDHLAERAKPQGEKELQELKGYCEKE 324
>sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergillus oryzae GN=mak5 PE=3 SV=1 Length = 757
Score = 31.6 bits (70), Expect = 2.5 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -3
Query: 438 QAEQQKQVRDFQDEVQERAKKARVKALQEARSVDRKEVKSV-SQNGASLPAGRDDKAV 268 QA Q++ ++ QDE E KKA+VK + A+ +K K + ++DK + Sbjct: 107 QAVSQEESKETQDEPNESDKKAKVKESKNAKKEKKKNAKDARKEQKEKAVESKEDKGI 164
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NZA9 |
Definition |
tr|A9NZA9|A9NZA9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
102 |
Score (bit) |
99.4 |
E-value |
1.0e-19 |
Report |
|