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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911855
Clone id YMU001_000010_A06
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000010_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCTTCGTAGACATCATCATTTACACAAAAGGGTATAACTTTTACTTTATTTTTTAATT
TTTTGGGATAGAGCCGGCAAGCCGGGAAGAGGGTATAACCATGGATATTGGTTGTGCCTT
TGTGGTCTCTGGCTTTTCTTTGAGTGGTCACTTTACCTTTGCTTATAGCAATTGGTGTTA
TAAAATATCTTCTTTGCTCCATAATACAACAGATTATATTGACTAATGAACCTCAGCTTT
CTACAGGCCTTGTATCTGTAAGATGAAAATTTGGAAAACTCCTCAAGATACTACACCATG
GGAGAGGAGACCTACAGTCACAAATGGTCCTTGGTAGGAAAGGACTGACTCCTTGGATTT
CTTCAAGTGGCAGTAACCCCTCTCTTCTATTAACATACTCTACAGCCTCTTCTGCAGTAA
CCCGGCTGCTCTGATGTACCAATCATGTAGGTTGGATTCTTTTGGCATTCTCCATATGCT
GCCCATTCACCGCAACTCTCATCCTCGTCTTTGCAATCTCCTACATCTCGCGCTGGGGAA
TC
■■Homology search results ■■ -
sp_hit_id Q19673
Definition sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=Caenorhabditis elegans
Align length 24
Score (bit) 43.1
E-value 0.0009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911855|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_A06.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=C...    43   9e-04
sp|Q97A95|TRI_THEVO Tricorn protease OS=Thermoplasma volcanium G...    34   0.53 
sp|Q7NTL6|HLDD_CHRVO ADP-L-glycero-D-manno-heptose-6-epimerase O...    33   0.69 
sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=G...    32   1.5  
sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus G...    32   2.0  
sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 OS=C...    32   2.6  
sp|O03199|ATP8_CERSI ATP synthase protein 8 OS=Ceratotherium sim...    31   4.5  
sp|P60781|RNP3_METMP Ribonuclease P protein component 3 OS=Metha...    30   9.9  
sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicas...    30   9.9  
sp|Q9VGB4|CP132_DROME Probable cytochrome P450 313a2 OS=Drosophi...    30   9.9  

>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3
           OS=Caenorhabditis elegans GN=tyr-3 PE=2 SV=5
          Length = 693

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -1

Query: 515 CKDEDESCGEWAAYGECQKNPTYM 444
           C +E+E CG W+A GECQKNP YM
Sbjct: 472 CFNENECCGPWSAKGECQKNPVYM 495



 Score = 34.3 bits (77), Expect = 0.40
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 515 CKDEDESCGEWAAYGECQKNPTYM 444
           C +ED+ C  WA  G+C+ NP YM
Sbjct: 591 CYNEDQCCPIWAQRGQCRSNPGYM 614



 Score = 33.9 bits (76), Expect = 0.53
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 518 DCKDEDESCGEWAAYGECQKNPTYM 444
           +C D   +C  W+  GEC KNP +M
Sbjct: 515 ECSDRHTNCAMWSRSGECNKNPLWM 539


>sp|Q97A95|TRI_THEVO Tricorn protease OS=Thermoplasma volcanium
           GN=tri PE=3 SV=1
          Length = 1030

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -2

Query: 226 LVNIICC--IMEQRRYFITPIAISKGKVTTQRKARDHKGTTNIHGYTLFPACRLYPKKLK 53
           L N I C  I++ R YFIT I  +    +T     D K  T+ H Y        YP+ L 
Sbjct: 188 LENHISCPVIVKDRIYFITDIDGAGNIYSTNLDGNDLKKHTDFHEY--------YPRHLN 239

Query: 52  NKVKVIPFCVNDDVY 8
              K I F +  D+Y
Sbjct: 240 TDGKTIVFSMGGDIY 254


>sp|Q7NTL6|HLDD_CHRVO ADP-L-glycero-D-manno-heptose-6-epimerase
           OS=Chromobacterium violaceum GN=hldD PE=3 SV=1
          Length = 333

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -2

Query: 208 CIMEQRRYFITPIAISKGKVTTQRKARDHKGTTNIHGYTLFPACRLYPKKLKNKVK 41
           C  E+ ++     A + GK T  ++ R H+G  N++GY+ F    L+ + L+ ++K
Sbjct: 105 CQHEEIQFLYASSAATYGKGTVFKEERQHEGPLNVYGYSKF----LFDQVLRQRIK 156


>sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=Gp5
           PE=2 SV=1
          Length = 567

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 100 HGYWLCLCGLWLFFEW 147
           H  WLC CGLW F +W
Sbjct: 420 HNPWLCDCGLWRFLQW 435


>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus
           GN=Gp5 PE=2 SV=1
          Length = 567

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 100 HGYWLCLCGLWLFFEW 147
           H  WLC CGLW F +W
Sbjct: 420 HNPWLCDCGLWPFLQW 435


>sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1
           OS=Caenorhabditis elegans GN=tyr-1 PE=1 SV=2
          Length = 601

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 518 DCKDEDESCGEWAAYGECQKNPTYM 444
           +C +ED  C +W+   EC+ N  YM
Sbjct: 479 NCYNEDPCCNQWSRQNECRTNTVYM 503


>sp|O03199|ATP8_CERSI ATP synthase protein 8 OS=Ceratotherium simum
           GN=MT-ATP8 PE=3 SV=1
          Length = 68

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 167 SNWCYKISSLLHNTTDYID**TSAFYRPCICKMKIWKTPQDTTPWERRPTVTNGP 331
           S W   I S++           S +  P   ++K+ KTP  TTPWE + T T  P
Sbjct: 7   STWSITIVSMIITLFIMFQLKLSKYSYPSSPELKLTKTPTHTTPWESKWTKTYLP 61


>sp|P60781|RNP3_METMP Ribonuclease P protein component 3
           OS=Methanococcus maripaludis GN=rnp3 PE=3 SV=1
          Length = 232

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 240 STGLVSVR*KFGKLLKILHHGRGDL----QSQMVLGRKGLTPWISSSGSN 377
           ST  V+V   FG LLK  ++ R  +    Q  + L +K  TP + SSG+N
Sbjct: 127 STNRVAVELNFGNLLKSKNYDRSKILWAFQRNLKLSKKYDTPVVISSGAN 176


>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A
           OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1
          Length = 683

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = -2

Query: 295 CSILRSFPNFHLTDTRPVES*GSLVNIIC---CIMEQRRYFITPIAISKGKVTTQRKARD 125
           CS+ R  PNF L DT  ++     +   C    I  Q ++    +A    ++    K  D
Sbjct: 377 CSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTED 436

Query: 124 HKGTTNIHGYTLFP-ACRLYPKKLKNKVKVIPFCVNDDVYE 5
            K   +    TLF    +++PK+   K   + + +N  + E
Sbjct: 437 DKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIME 477


>sp|Q9VGB4|CP132_DROME Probable cytochrome P450 313a2 OS=Drosophila
           melanogaster GN=Cyp313a2 PE=3 SV=3
          Length = 493

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 172 IAISKGKVTTQRKARDHKGTTNIHGYTLFPACRLYPKKLKNKVKVIPFCVN 20
           + IS+GK++++    D  G+T +      P       K+  KV   PFC+N
Sbjct: 48  LIISRGKMSSRTTYMDKHGSTYMAWIGTTPIVITRDPKIAEKVLTSPFCIN 98
tr_hit_id A9TA62
Definition tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 63.2
E-value 9.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911855|Adiantum capillus-veneris mRNA, clone:
YMU001_000010_A06.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomit...    63   9e-09
tr|B4FLB6|B4FLB6_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1            59   1e-07
tr|Q6AVM9|Q6AVM9_ORYSJ Os05g0489100 protein OS=Oryza sativa subs...    58   4e-07
tr|A2Y5Z3|A2Y5Z3_ORYSI Putative uncharacterized protein OS=Oryza...    58   4e-07
tr|Q8RWK0|Q8RWK0_ARATH Putative uncharacterized protein At5g1890...    57   6e-07
tr|Q8LAN3|Q8LAN3_ARATH Prolyl 4-hydroxylase alpha subunit-like p...    57   6e-07
tr|A9NS85|A9NS85_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|Q9M0K1|Q9M0K1_ARATH Putative uncharacterized protein AT4g2560...    56   1e-06
tr|Q8GXT7|Q8GXT7_ARATH Putative uncharacterized protein At4g2560...    56   1e-06
tr|O65602|O65602_ARATH Putative uncharacterized protein M7J2.30 ...    56   1e-06
tr|B6ZN57|B6ZN57_TOBAC Type 2 proly 4-hydroxylase OS=Nicotiana t...    56   1e-06
tr|A7PMI3|A7PMI3_VITVI Chromosome chr14 scaffold_21, whole genom...    55   2e-06
tr|A7NWB3|A7NWB3_VITVI Chromosome chr5 scaffold_2, whole genome ...    55   2e-06
tr|B8APC3|B8APC3_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A7QG22|A7QG22_VITVI Chromosome undetermined scaffold_91, whol...    55   3e-06
tr|Q338D2|Q338D2_ORYSJ Prolyl 4-hydroxylase, putative, expressed...    54   4e-06
tr|Q109P7|Q109P7_ORYSJ Os10g0413500 protein OS=Oryza sativa subs...    54   4e-06
tr|B8BGT2|B8BGT2_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A3C4P9|A3C4P9_ORYSJ Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A1YAC2|A1YAC2_DIACA Prolyl 4-hydroxylase OS=Dianthus caryophy...    54   5e-06
tr|Q5GAV6|Q5GAV6_MAIZE Putative uncharacterized protein OS=Zea m...    54   7e-06
tr|Q10RA7|Q10RA7_ORYSJ Prolyl 4-hydroxylase, putative, expressed...    54   7e-06
tr|Q0DUV1|Q0DUV1_ORYSJ Os03g0166200 protein OS=Oryza sativa subs...    54   7e-06
tr|A2XCX2|A2XCX2_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|Q9SQT3|Q9SQT3_ARATH F24P17.24 protein OS=Arabidopsis thaliana...    53   1e-05
tr|Q8L8T9|Q8L8T9_ARATH Prolyl 4-hydroxylase alpha subunit-like p...    53   1e-05
tr|Q0WP28|Q0WP28_ARATH Putative uncharacterized protein At3g0630...    53   1e-05
tr|B6TED5|B6TED5_MAIZE Prolyl 4-hydroxylase OS=Zea mays PE=2 SV=1      53   1e-05
tr|B4FGT5|B4FGT5_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|Q9LSI6|Q9LSI6_ARATH Prolyl 4-hydroxylase alpha subunit-like p...    52   2e-05

>tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_16503 PE=4 SV=1
          Length = 263

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 26/42 (61%), Positives = 30/42 (71%)
 Frame = -1

Query: 542 DSPARDVGDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417
           + P    G C +E +SC EWAAYGECQKNP YM+GT E PGY
Sbjct: 214 EKPRPKNGACVNEVDSCEEWAAYGECQKNPAYMVGTKEWPGY 255


>tr|B4FLB6|B4FLB6_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1
          Length = 308

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417
           G+C DE+ESC +WAA GEC KNP YM+GT+  PGY
Sbjct: 266 GNCTDENESCAKWAALGECIKNPEYMVGTTALPGY 300


>tr|Q6AVM9|Q6AVM9_ORYSJ Os05g0489100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1119_H02.14 PE=2 SV=1
          Length = 319

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417
           G+C D++ESC +WAA GEC KNP YMIGT+  PGY
Sbjct: 277 GNCTDDNESCEKWAALGECIKNPEYMIGTAALPGY 311


>tr|A2Y5Z3|A2Y5Z3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20415 PE=4 SV=1
          Length = 319

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417
           G+C D++ESC +WAA GEC KNP YMIGT+  PGY
Sbjct: 277 GNCTDDNESCEKWAALGECIKNPEYMIGTAALPGY 311


>tr|Q8RWK0|Q8RWK0_ARATH Putative uncharacterized protein At5g18900
           OS=Arabidopsis thaliana GN=At5g18900 PE=2 SV=1
          Length = 298

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417
           G+C D +ESC  WA  GEC KNP YM+GT+E PGY
Sbjct: 256 GNCTDMNESCERWAVLGECTKNPEYMVGTTELPGY 290


>tr|Q8LAN3|Q8LAN3_ARATH Prolyl 4-hydroxylase alpha subunit-like
           protein OS=Arabidopsis thaliana PE=2 SV=1
          Length = 298

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPGY 417
           G+C D +ESC  WA  GEC KNP YM+GT+E PGY
Sbjct: 256 GNCTDMNESCERWAVLGECTKNPEYMVGTTELPGY 290


>tr|A9NS85|A9NS85_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 208

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 542 DSPARDVGDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420
           D P +   +C D++  CGEWAAYGEC  NP YM+G+ + PG
Sbjct: 159 DKPRQSSDNCVDQNPRCGEWAAYGECNNNPIYMLGSPDLPG 199


>tr|Q9M0K1|Q9M0K1_ARATH Putative uncharacterized protein AT4g25600
           (Fragment) OS=Arabidopsis thaliana GN=AT4g25600 PE=4
           SV=1
          Length = 315

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420
           G+C DEDE+CG WA  GEC+KNP YMIG+ +  G
Sbjct: 273 GECSDEDENCGRWAKLGECKKNPVYMIGSPDYYG 306


>tr|Q8GXT7|Q8GXT7_ARATH Putative uncharacterized protein
           At4g25600/M7J2_30 (Putative uncharacterized protein
           At4g25600) OS=Arabidopsis thaliana GN=At4g25600/M7J2_30
           PE=2 SV=1
          Length = 291

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420
           G+C DEDE+CG WA  GEC+KNP YMIG+ +  G
Sbjct: 249 GECSDEDENCGRWAKLGECKKNPVYMIGSPDYYG 282


>tr|O65602|O65602_ARATH Putative uncharacterized protein M7J2.30
           OS=Arabidopsis thaliana GN=M7J2.30 PE=4 SV=1
          Length = 316

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -1

Query: 521 GDCKDEDESCGEWAAYGECQKNPTYMIGTSEQPG 420
           G+C DEDE+CG WA  GEC+KNP YMIG+ +  G
Sbjct: 274 GECSDEDENCGRWAKLGECKKNPVYMIGSPDYYG 307