NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911777
Clone id YMU001_000009_A11
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000009_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAAGATCAAAGCAGAGCATACCAGTAAAACAGTCCATACATTGGGGGCTTTTACAAGGA
AGCCCATAGCCTTTACAAAGGAGCTACCATAGACATAAACTCGATATAGGAACTAACAGG
ACTGCCATGTGTGCCACCTCCTTGAGAAGACTGCCACTGGCGCACCCGAAGAAGCGCACG
AACCAGACAAACAAAGAGAAGCTGCAACCCGAGCATAAGCATAACAAAAACCAACCTTTG
CAGCTGGAAACTGTAATTAGAGCTGGAAATCGTAAGAGCTGGAAGCTCAGGTATTGCAGC
TGGAAACTGTAAGAGCTGGAAGCTGGAAAATGCAAGTTTGAAACTGTAAGAGCTGCACAT
GCAAGCTTGAGTTGCGCTTGACTTGCAATCACAGAACTGCACGAGCTGCATGCGCCATGG
AAGGTTGACGAAGCTGGGGAAGAAAACAATTGCGGGTGCGCCTGTGAAGTA
■■Homology search results ■■ -
sp_hit_id O75445
Definition sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens
Align length 47
Score (bit) 33.1
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911777|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_A11.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3       33   0.63 
sp|Q940V4|C85A2_ARATH Cytochrome P450 85A2 OS=Arabidopsis thalia...    33   0.84 
sp|Q2PG52|BEX1_MACFA Protein BEX1 OS=Macaca fascicularis GN=BEX1...    32   1.1  
sp|Q1MQW4|RL13_LAWIP 50S ribosomal protein L13 OS=Lawsonia intra...    31   2.4  
sp|Q9FMA5|C85A1_ARATH Cytochrome P450 85A1 OS=Arabidopsis thalia...    30   5.4  
sp|A6VNL8|QUEF_ACTSZ NADPH-dependent 7-cyano-7-deazaguanine redu...    29   9.1  
sp|P75197|Y583_MYCPN Uncharacterized protein MPN_583 OS=Mycoplas...    29   9.3  
sp|P24915|VG12_SHV21 Uncharacterized gene 12 protein OS=Saimirii...    29   9.3  

>sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3
          Length = 5202

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 282 EAQVLQLETVRAGSWKMQV*NCKSCTCKLELRL---TCNHRTARAAC 413
           EA+ LQ +T R   + + V NCK+C C     L    CN +T +  C
Sbjct: 771 EAKGLQCDTCRENFYGLDVTNCKACDCDTAGSLPGTVCNAKTGQCIC 817


>sp|Q940V4|C85A2_ARATH Cytochrome P450 85A2 OS=Arabidopsis thaliana
           GN=CYP85A2 PE=2 SV=1
          Length = 465

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -1

Query: 225 VMLMLGLQLLFVCLVRALLRVRQWQSSQGG---GTHGSPV 115
           +M++LGL ++ VCL  ALLR  Q + S+ G   GT G P+
Sbjct: 4   MMMILGLLVIIVCLCTALLRWNQMRYSKKGLPPGTMGWPI 43


>sp|Q2PG52|BEX1_MACFA Protein BEX1 OS=Macaca fascicularis GN=BEX1
           PE=2 SV=1
          Length = 128

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 172 KRTNQTNKEKLQPEHKHNKNQPLQL-----ETVIRAGNRKSWKLR 291
           + TNQ N+EK + E   NK +PL L     E  +  GNR+ +++R
Sbjct: 15  ENTNQENEEKEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVR 59


>sp|Q1MQW4|RL13_LAWIP 50S ribosomal protein L13 OS=Lawsonia
           intracellularis (strain PHE/MN1-00) GN=rplM PE=3 SV=1
          Length = 144

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
 Frame = +1

Query: 76  QRSYHRHKLDIGTNRTAMCATSLRRLP---LAH------PKKRTNQTNKEKLQ----PEH 216
           Q+ Y+RH   +G  +     T L + P   L H      PK R  +   +KL+    PEH
Sbjct: 71  QKKYYRHSGYVGGLKETTLKTLLEKKPAEVLIHAVRGMLPKNRLGRAMLKKLKVYAGPEH 130

Query: 217 KHNKNQPLQL 246
           +H   QP+ L
Sbjct: 131 QHIAQQPIPL 140


>sp|Q9FMA5|C85A1_ARATH Cytochrome P450 85A1 OS=Arabidopsis thaliana
           GN=CYP85A1 PE=2 SV=1
          Length = 465

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -1

Query: 225 VMLMLGLQLLFVCLVRALLRVRQWQSSQGG---GTHGSPV 115
           +M+M+GL L+ V L  ALLR  Q + ++ G   GT G P+
Sbjct: 4   MMVMMGLLLIIVSLCSALLRWNQMRYTKNGLPPGTMGWPI 43


>sp|A6VNL8|QUEF_ACTSZ NADPH-dependent 7-cyano-7-deazaguanine
           reductase OS=Actinobacillus succinogenes (strain ATCC
           55618 / 130Z) GN=queF PE=3 SV=1
          Length = 279

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = +3

Query: 276 ELEAQVLQLETVRAGSWKMQV*NCKSCTCKLELRLTCNHRTARAACAMEG*RSWGRKQLR 455
           EL  +++  + +    +        +CTC +++  T      ++ C + G   WG  Q+R
Sbjct: 142 ELSGEIIDNQDIEISDYGFNAELLTNCTCDVQVEETLVSHLLKSNCLITGQPDWGTLQIR 201


>sp|P75197|Y583_MYCPN Uncharacterized protein MPN_583 OS=Mycoplasma
           pneumoniae GN=MPN_583 PE=3 SV=1
          Length = 225

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 118 RTAMCATSLRRLPLAHPKKRTNQTNKEKLQPEHKHNKNQPLQLET 252
           +TA  A       L   KK+ N T  +K QP+   N  Q  Q ET
Sbjct: 18  KTAFTAHDFVNYTLPKDKKKQNDTENKKKQPKDGENDKQKEQAET 62


>sp|P24915|VG12_SHV21 Uncharacterized gene 12 protein OS=Saimiriine
           herpesvirus 2 (strain 11) GN=12 PE=4 SV=1
          Length = 169

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -1

Query: 408 QLVQFCDCKSSATQACMCSSYS-FKLAFSSFQLLQFPAAIPELPALTISSSNYSFQLQRL 232
           +L+Q CDC S     C+ S    FK +  +F   ++   +    +L   SS    Q   +
Sbjct: 18  ELLQACDCPSRVHHTCLQSHIQCFKSSHCTFCEKKYKIMV-MCNSLKKCSSPVLEQANWI 76

Query: 231 VFVMLMLGLQLLFVCLVRALLRVRQWQSS 145
           V  + +  L  +   L+   L +R WQSS
Sbjct: 77  VLCVCVSTLLCILCILLDICLTIRLWQSS 105
tr_hit_id A7GQV4
Definition tr|A7GQV4|A7GQV4_BACCN Putative uncharacterized protein OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
Align length 57
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911777|Adiantum capillus-veneris mRNA, clone:
YMU001_000009_A11.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7GQV4|A7GQV4_BACCN Putative uncharacterized protein OS=Bacil...    37   0.38 
tr|B6YYG2|B6YYG2_9RHOB Binding-protein-dependent transport syste...    33   5.4  
tr|B6DTN4|B6DTN4_9EUGL Putative uncharacterized protein OS=Bodo ...    33   5.4  
tr|B0E935|B0E935_ENTDI Putative uncharacterized protein OS=Entam...    33   5.4  
tr|Q0FHN4|Q0FHN4_9RHOB Prolipoprotein diacylglyceryl transferase...    33   7.1  
tr|B6PUB3|B6PUB3_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|B6L9T4|B6L9T4_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q68JQ7|Q68JQ7_TERCA Olfactory receptor 19 (Fragment) OS=Terra...    33   9.3  
tr|O35434|O35434_RAT Olfactory receptor-like protein OS=Rattus n...    33   9.3  
tr|B8I085|B8I085_CLOCE CRISPR-associated protein, Csn1 family OS...    33   9.3  
tr|B1SSR1|B1SSR1_9BACI Putative uncharacterized protein OS=Geoba...    33   9.3  
tr|B1SS95|B1SS95_9BACI Putative uncharacterized protein OS=Geoba...    33   9.3  
tr|B1SRC2|B1SRC2_9BACI Putative uncharacterized protein OS=Geoba...    33   9.3  
tr|Q9XXB2|Q9XXB2_CAEEL Putative uncharacterized protein srh-292 ...    33   9.3  
tr|Q1MS97|Q1MS97_LAWIP NA OS=Lawsonia intracellularis (strain PH...    33   9.3  

>tr|A7GQV4|A7GQV4_BACCN Putative uncharacterized protein OS=Bacillus
           cereus subsp. cytotoxis (strain NVH 391-98)
           GN=Bcer98_2263 PE=4 SV=1
          Length = 200

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 336 LAFSSFQLLQFPAAIPELPALTISSSNYSFQLQRLVFVMLMLGLQLLFVCLVRALLR 166
           LAF  F   ++    P L  L I + N+   L   +F+++M+GL +  +C +RA  R
Sbjct: 28  LAFGIFVKPKWFTMSPGLGGLAIEARNFQLPLWIAIFMLIMMGLNIFLLCQIRAFFR 84


>tr|B6YYG2|B6YYG2_9RHOB Binding-protein-dependent transport systems
           inner membrane component, putative OS=Pseudovibrio sp.
           JE062 GN=PJE062_3917 PE=4 SV=1
          Length = 306

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
 Frame = -1

Query: 453 AIVFFPSFVNLPWRMQLVQFCDCKSSATQACMCSSYSFKL-AFSSFQLLQ--FPAAIPEL 283
           A+V   S   + WR+ L Q      SA+  C    ++F + AF +  +L   +P  +P L
Sbjct: 203 AMVLGASSRQIFWRVTLPQIMPGIVSASLIC----FAFNIGAFEAPFILGGGYPDTLPVL 258

Query: 282 PALTISSSNYSFQLQRLVFVMLMLGLQLLFVCLVRALLRVRQWQSSQG 139
                  +NY+FQLQ +  V+ +  +  +F  L   LL  R+W+ ++G
Sbjct: 259 AWRYFQDANYAFQLQGMAVVVSLALVSGVF--LGAYLLGYRRWERARG 304


>tr|B6DTN4|B6DTN4_9EUGL Putative uncharacterized protein OS=Bodo
           saltans PE=4 SV=1
          Length = 447

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
 Frame = +1

Query: 70  PLQRSYHRHKLDIGTNRTAMCATSLRRLPLAHPKK-----RTNQTNKEKLQ-PEHKHNKN 231
           P +R  +R    + T  + +CA  LR +   +PK       T+   K+KL   EH H K+
Sbjct: 112 PSKREEYRRVFGLITRPSNLCA--LRHIEDMNPKNFYVEVDTSLVAKKKLVGAEHLHRKS 169

Query: 232 QPLQLETVIRAGNRKSWKLRYCSWKL 309
           + L L    + GNR +++ +Y  WK+
Sbjct: 170 EMLTLPNNAQTGNRTNYQQQYV-WKV 194


>tr|B0E935|B0E935_ENTDI Putative uncharacterized protein OS=Entamoeba
            dispar SAW760 GN=EDI_172760 PE=4 SV=1
          Length = 2388

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
 Frame = -1

Query: 450  IVFFPSFVNLPWRMQLVQFCDCKSSATQACMCSSYSFKLAFSSFQLLQFPAAIPELPALT 271
            ++ +PSFV            + K+   +AC+   Y FK+ + +   LQ  A    L +  
Sbjct: 1933 VIVYPSFV------------ETKTKIVKACLTIFYLFKVVYWTISGLQIRAGYNILSSKR 1980

Query: 270  ISSSNYSFQLQRLVFVMLMLGL-----QLLFVCLVRALLRVRQW 154
            I   NYSF  Q +      L        +L  CL +  +  +QW
Sbjct: 1981 ILMINYSFYSQMIFHTYYTLPFVYEIRTILDWCLSKTSMFYKQW 2024


>tr|Q0FHN4|Q0FHN4_9RHOB Prolipoprotein diacylglyceryl transferase
           OS=Roseovarius sp. HTCC2601 GN=R2601_09245 PE=4 SV=1
          Length = 295

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 312 LQFPAAIPELPALTISSSNYSFQLQRLVFVM-LMLGLQLLFVCLVRALLRVRQWQ 151
           LQFP+  PEL +++I S  ++ +   L ++  ++LG QL       AL RVR W+
Sbjct: 5   LQFPSLSPELFSISIGSFEFALRWYALAYIAGILLGWQL----AAAALRRVRLWR 55


>tr|B6PUB3|B6PUB3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_111045 PE=4 SV=1
          Length = 485

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -1

Query: 318 QLLQFPAAIPELPALTISSSNYSFQLQRLVFVMLMLGLQLLFVC 187
           Q+ +    + E P   + ++N SF +  LV V+LMLGL +LF+C
Sbjct: 37  QMREKTDGVQETPTEELYTTNESFCMVLLVCVILMLGLGVLFLC 80


>tr|B6L9T4|B6L9T4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_67911 PE=4 SV=1
          Length = 486

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -1

Query: 318 QLLQFPAAIPELPALTISSSNYSFQLQRLVFVMLMLGLQLLFVC 187
           Q+ +    + E P   + ++N SF +  LV V+LMLGL +LF+C
Sbjct: 37  QMREKTDGVQETPTEELYTTNESFCMVLLVCVILMLGLGVLFLC 80


>tr|Q68JQ7|Q68JQ7_TERCA Olfactory receptor 19 (Fragment)
           OS=Terrapene carolina PE=4 SV=1
          Length = 186

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = -1

Query: 345 SFKLAFSSFQLL-QFPAAIPELPALTISSSNYSFQLQRLVF-VMLMLGLQLLFVCLVRAL 172
           +F L F    ++ QF   IP+L  LT S S Y  +++ L F V L+LGL   + C++R+ 
Sbjct: 106 TFALTFCGGNMVDQFFCEIPQLLKLTCSDS-YLSEVRVLAFSVCLVLGLLCFYDCVIRSA 164

Query: 171 LRV 163
           L++
Sbjct: 165 LQI 167


>tr|O35434|O35434_RAT Olfactory receptor-like protein OS=Rattus
           norvegicus GN=Olr857 PE=2 SV=1
          Length = 315

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 27/106 (25%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
 Frame = -1

Query: 387 CKS-SATQACMCSSYSFKLAFSS-FQLLQFPAAIPELPALTISSSNYSFQLQRLV-FVML 217
           C S S T A + + ++ +L +   +++  F   +P +  L  + ++++ +L  ++ FV+L
Sbjct: 151 CSSISVTGALIYTVFTMRLPYCGPYKINHFFCEVPAVLKLACADTSFNDRLDFILGFVLL 210

Query: 216 MLGLQLL---FVCLVRALLRVRQWQSSQGGGTHGSPVSSYIEFMSM 88
           ++ L L+   + C+  ++LR+R   SSQG     S  +S+I  ++M
Sbjct: 211 LVPLSLILASYACIFVSILRIR---SSQGRLKSFSTCASHITVVTM 253


>tr|B8I085|B8I085_CLOCE CRISPR-associated protein, Csn1 family
           OS=Clostridium cellulolyticum H10 GN=Ccel_3120 PE=4 SV=1
          Length = 1021

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +1

Query: 151 LPLAHPKKRTNQTNKEKLQPEHKHNKNQPLQLETVIRAGNRKSWKLRYCSWKL*ELEAGK 330
           + LA     T Q +++ L+ EH++N+    ++  +IR   R +  L    W+L E + G+
Sbjct: 491 IELAREAGMTRQ-DRDNLKKEHENNRKAREKISDLIRQNGRVASGLDILKWRLWEDQGGR 549

Query: 331 CKF 339
           C +
Sbjct: 550 CAY 552