BP911614 |
Clone id |
YMU001_000007_B03 |
Library |
YMU01 |
Length |
538 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000007_B03. |
Accession |
BP911614 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1969Contig1 |
Sequence |
TTGTTTCCCCAACAAAATTTCTTTCTATTAACATTGAGATACTTTACAAGATTGTTCTGA GCCTCAACAATGTGTTGTGGCTTTCCTATAGAACATAGCGAGGAAAGAAGGAGAAGCTTT CCTTAGGGCTCTCCTCTTATCCAGATAGGGCTCTCGCACTAAGTATATCTACAACCAAGA TTACCTAAACAAAGCTACCAAATACTCCTCCGCTTTTCAGCTTCTCCATTCTTGCTTGAA GTCCTGACAATGCTTTGTCTTCAGCAGGATGATGCTCCTCAGTCAAGTGGGATACTGACT CCGAGCTTGGCTCATCAATCCGTGAAATTGCATTGCGAGCGGACCCAACAGTCCACCCAT TTGTGTACTGACCCTGACCCCCAGTAGGTGGCTTTCCAGCAGTTGCAGCCTGTATATTTT TCATTCTTTCTCTGATTGCGTCCAGTGTTCCAGGCATGGGTGCCCCAAAGTTCATTTTCC CATCACCTCCTACATTTCCTGCACCCTCATATGGTCCCGTAATTGATCTCAGATAATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6CHN0 |
Definition |
sp|Q6CHN0|SLA1_YARLI Actin cytoskeleton-regulatory complex protein SLA1 OS=Yarrowia lipolytica |
Align length |
40 |
Score (bit) |
31.6 |
E-value |
2.6 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QYQ0 |
Definition |
tr|A7QYQ0|A7QYQ0_VITVI Chromosome undetermined scaffold_252, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
87 |
Score (bit) |
62.8 |
E-value |
1.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911614|Adiantum capillus-veneris mRNA, clone: YMU001_000007_B03. (538 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QYQ0|A7QYQ0_VITVI Chromosome undetermined scaffold_252, who... 63 1e-08 tr|A9SCU9|A9SCU9_PHYPA Predicted protein OS=Physcomitrella paten... 60 6e-08 tr|Q5N749|Q5N749_ORYSJ Putative microtubule bundling polypeptide... 57 5e-07 tr|B8ABA5|B8ABA5_ORYSI Putative uncharacterized protein OS=Oryza... 57 5e-07 tr|A2ZYZ0|A2ZYZ0_ORYSJ Putative uncharacterized protein OS=Oryza... 57 5e-07 tr|Q8S912|Q8S912_TOBAC Microtubule bundling polypeptide TMBP200 ... 56 1e-06 tr|B8A3F8|B8A3F8_MAIZE Putative uncharacterized protein OS=Zea m... 55 2e-06 tr|Q9ZQN6|Q9ZQN6_ARATH Similar to ch-TOG protein from Homo sapie... 53 1e-05 tr|Q94FN2|Q94FN2_ARATH Microtubule organization 1 protein (MOR1/... 53 1e-05 tr|Q56XA7|Q56XA7_ARATH Similar to ch-TOG protein from Homo sapie... 53 1e-05 tr|Q0G0K8|Q0G0K8_9RHIZ UvrABC system protein B OS=Fulvimarina pe... 42 0.016 tr|A6W3B5|A6W3B5_MARMS RNA polymerase, sigma-24 subunit, ECF sub... 35 2.5 tr|Q6M942|Q6M942_NEUCR Related to PEST phosphatase interacting p... 35 3.3 tr|A7UWG5|A7UWG5_NEUCR Putative uncharacterized protein OS=Neuro... 35 3.3 tr|A7S350|A7S350_NEMVE Predicted protein OS=Nematostella vectens... 34 4.3 tr|Q2RN30|Q2RN30_RHORT Protein translocase subunit secD / protei... 34 5.6
>tr|A7QYQ0|A7QYQ0_VITVI Chromosome undetermined scaffold_252, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010282001 PE=4 SV=1 Length = 425
Score = 62.8 bits (151), Expect = 1e-08 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 4/87 (4%) Frame = -1
Query: 451 GTLDAIRERMKNIQAATAGKPPTGGQG--QYTNGWTVGSARNAISRIDEPSSESVSHLTE 278 GTLDAIRERMK+IQ ATAG G Y NG G + S++ S +V+ Sbjct: 339 GTLDAIRERMKSIQLATAGGNHDSGNRPLMYVNG---GLSHGIASQLTHASDRAVAENPV 395
Query: 277 EHH--PAEDKALSGLQARMEKLKSGGV 203 + P ++KALSGLQARME+LKSG + Sbjct: 396 QGGVLPMDEKALSGLQARMERLKSGTI 422
>tr|A9SCU9|A9SCU9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_106216 PE=4 SV=1 Length = 1974
Score = 60.5 bits (145), Expect = 6e-08 Identities = 38/82 (46%), Positives = 45/82 (54%) Frame = -1
Query: 451 GTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRIDEPSSESVSHLTEEH 272 GTLDAIRERMK+IQA AG T +NG S S+S + Sbjct: 1906 GTLDAIRERMKSIQAGAAGTTVTHSTNFSSNG-----------------SVSLSRTSSSG 1948
Query: 271 HPAEDKALSGLQARMEKLKSGG 206 ED+ALSGLQARME+LK+GG Sbjct: 1949 EIVEDRALSGLQARMERLKAGG 1970
>tr|Q5N749|Q5N749_ORYSJ Putative microtubule bundling polypeptide TMBP200 (Os01g0816400 protein) OS=Oryza sativa subsp. japonica GN=OSJNBa0085D07.49-1 PE=4 SV=1 Length = 1997
Score = 57.4 bits (137), Expect = 5e-07 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Frame = -1
Query: 451 GTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRID-EPSSESVSHLTEE 275 GTLDA+RERMK+IQAA G G Q + G+ + +R+D +P ++++ Sbjct: 1918 GTLDALRERMKSIQAAAVGANFDGVQARPLPSMN-GNTLHGGTRLDADPQTQNIIP---- 1972
Query: 274 HHPAEDKALSGLQARMEKLKSGGV 203 P +++ALSGLQARME+LKSG + Sbjct: 1973 --PMDERALSGLQARMERLKSGSM 1994
>tr|B8ABA5|B8ABA5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04204 PE=4 SV=1 Length = 1941
Score = 57.4 bits (137), Expect = 5e-07 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Frame = -1
Query: 451 GTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRID-EPSSESVSHLTEE 275 GTLDA+RERMK+IQAA G G Q + G+ + +R+D +P ++++ Sbjct: 1862 GTLDALRERMKSIQAAAVGANFDGVQARPLPSMN-GNTLHGGTRLDADPQTQNIIP---- 1916
Query: 274 HHPAEDKALSGLQARMEKLKSGGV 203 P +++ALSGLQARME+LKSG + Sbjct: 1917 --PMDERALSGLQARMERLKSGSM 1938
>tr|A2ZYZ0|A2ZYZ0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_003762 PE=4 SV=1 Length = 1966
Score = 57.4 bits (137), Expect = 5e-07 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Frame = -1
Query: 451 GTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRID-EPSSESVSHLTEE 275 GTLDA+RERMK+IQAA G G Q + G+ + +R+D +P ++++ Sbjct: 1887 GTLDALRERMKSIQAAAVGANFDGVQARPLPSMN-GNTLHGGTRLDADPQTQNIIP---- 1941
Query: 274 HHPAEDKALSGLQARMEKLKSGGV 203 P +++ALSGLQARME+LKSG + Sbjct: 1942 --PMDERALSGLQARMERLKSGSM 1963
>tr|Q8S912|Q8S912_TOBAC Microtubule bundling polypeptide TMBP200 OS=Nicotiana tabacum PE=2 SV=1 Length = 2029
Score = 55.8 bits (133), Expect = 1e-06 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Frame = -1
Query: 451 GTLDAIRERMKNIQ-AATAGKPPTGGQGQYTNGWTVGSARNAISRIDEPSSESVSHLTEE 275 GTL+AIRERMK++ AAT G P + T+ S +S + + + H + E Sbjct: 1945 GTLEAIRERMKSMSLAATGGNPDPSSR-------TLMSMNGNVSHMVSTQAPGIEHSSIE 1997
Query: 274 HH------PAEDKALSGLQARMEKLKSGGV 203 + P ++KALSGLQARME+LKSG + Sbjct: 1998 NSIQSGVLPMDEKALSGLQARMERLKSGSM 2027
>tr|B8A3F8|B8A3F8_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 467
Score = 55.5 bits (132), Expect = 2e-06 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Frame = -1
Query: 520 TGPYEGAGNVGGDGKMNFGAPMPGTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGS 341 T P+ G G + + GTLDA+RERMK+IQAA G G Q + + Sbjct: 367 TQPFRGQGAITDQQTDRYHTS--GTLDALRERMKSIQAAAIGHFD-GAQARPLASMNGSN 423
Query: 340 ARNAISRID-EPSSESVSHLTEEHHPAEDKALSGLQARMEKLKSGGV 203 + +R+D EP S P +++ALSGLQARME+LKSG + Sbjct: 424 MVHGGTRLDGEPQQRS------NIPPMDERALSGLQARMERLKSGSM 464
>tr|Q9ZQN6|Q9ZQN6_ARATH Similar to ch-TOG protein from Homo sapiens OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=2 Length = 1611
Score = 52.8 bits (125), Expect = 1e-05 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Frame = -1
Query: 475 MNFGAPMPGTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRIDEPSSES 296 MN G M GTLDAIRERMKN+Q A++ P TN ++++ P S+ Sbjct: 1524 MNPGV-MTGTLDAIRERMKNMQLASS--EPVSKPLMPTND------NLSMNQQSVPPSQM 1574
Query: 295 VSHLTEEHH---PAEDKALSGLQARMEKLKSGGV 203 H P ++KALSGLQARME+LK G + Sbjct: 1575 GQETVHTHPVVLPMDEKALSGLQARMERLKGGSL 1608
>tr|Q94FN2|Q94FN2_ARATH Microtubule organization 1 protein (MOR1/GEM1) OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=1 Length = 1978
Score = 52.8 bits (125), Expect = 1e-05 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Frame = -1
Query: 475 MNFGAPMPGTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRIDEPSSES 296 MN G M GTLDAIRERMKN+Q A++ P TN ++++ P S+ Sbjct: 1891 MNPGV-MTGTLDAIRERMKNMQLASS--EPVSKPLMPTND------NLSMNQQSVPPSQM 1941
Query: 295 VSHLTEEHH---PAEDKALSGLQARMEKLKSGGV 203 H P ++KALSGLQARME+LK G + Sbjct: 1942 GQETVHTHPVVLPMDEKALSGLQARMERLKGGSL 1975
>tr|Q56XA7|Q56XA7_ARATH Similar to ch-TOG protein from Homo sapiens OS=Arabidopsis thaliana GN=At2g35630 PE=2 SV=1 Length = 434
Score = 52.8 bits (125), Expect = 1e-05 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Frame = -1
Query: 475 MNFGAPMPGTLDAIRERMKNIQAATAGKPPTGGQGQYTNGWTVGSARNAISRIDEPSSES 296 MN G M GTLDAIRERMKN+Q A++ P TN ++++ P S+ Sbjct: 347 MNPGV-MTGTLDAIRERMKNMQLASS--EPVSKPLMPTND------NLSMNQQSVPPSQM 397
Query: 295 VSHLTEEHH---PAEDKALSGLQARMEKLKSGGV 203 H P ++KALSGLQARME+LK G + Sbjct: 398 GQETVHTHPVVLPMDEKALSGLQARMERLKGGSL 431
|